RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 MRC1P22897 1456 aa25.47■■□□□ 1.67
CKS1B-203ENST00000368439 ITPK1Q13572 414 aa25.47■■□□□ 1.67
CKS1B-203ENST00000368439 SLC16A10Q8TF71 515 aa25.47■■□□□ 1.67
CKS1B-203ENST00000368439 SLC4A9Q96Q91 983 aa25.47■■□□□ 1.67
CKS1B-203ENST00000368439 LGR6Q9HBX8 967 aa25.47■■□□□ 1.67
CKS1B-203ENST00000368439 HMGB2P26583 209 aaKnown RBP25.46■■□□□ 1.67
CKS1B-203ENST00000368439 COL23A1Q86Y22 540 aaPredicted RBP25.46■■□□□ 1.67
CKS1B-203ENST00000368439 NFATC2IPQ8NCF5 419 aa25.46■■□□□ 1.67
CKS1B-203ENST00000368439 LINC00116Q8NCU8 138 aa25.46■■□□□ 1.67
CKS1B-203ENST00000368439 PPP1R1BQ9UD71 204 aaPredicted RBP25.46■■□□□ 1.67
CKS1B-203ENST00000368439 COL5A3P25940 1745 aaPredicted RBP25.46■■□□□ 1.67
CKS1B-203ENST00000368439 AMIGO3Q86WK7 504 aa25.45■■□□□ 1.66
CKS1B-203ENST00000368439 RNMTO43148 476 aaKnown RBP25.44■■□□□ 1.66
CKS1B-203ENST00000368439 ATP6V1AP38606 617 aa25.44■■□□□ 1.66
CKS1B-203ENST00000368439 DDX10Q13206 875 aaKnown RBP25.44■■□□□ 1.66
CKS1B-203ENST00000368439 RSPH6AQ9H0K4 717 aa25.44■■□□□ 1.66
CKS1B-203ENST00000368439 SLC52A2Q9HAB3 445 aa25.42■■□□□ 1.66
CKS1B-203ENST00000368439 NUDCQ9Y266 331 aa25.42■■□□□ 1.66
CKS1B-203ENST00000368439 CICQ96RK0 1608 aaPredicted RBP25.41■■□□□ 1.66
CKS1B-203ENST00000368439 PHACTR3Q96KR7 559 aa25.41■■□□□ 1.66
CKS1B-203ENST00000368439 PRKAR2BP31323 418 aa25.4■■□□□ 1.66
CKS1B-203ENST00000368439 AK7Q96M32 723 aa25.4■■□□□ 1.66
CKS1B-203ENST00000368439 TJP1Q07157 1748 aa25.4■■□□□ 1.66
CKS1B-203ENST00000368439 MYH14Q7Z406 1995 aaKnown RBP25.39■■□□□ 1.66
CKS1B-203ENST00000368439 GAS2L2Q8NHY3 880 aa25.39■■□□□ 1.66
CKS1B-203ENST00000368439 RBM42Q9BTD8 480 aaKnown RBP25.39■■□□□ 1.66
CKS1B-203ENST00000368439 SIPA1L3O60292 1781 aaPredicted RBP25.39■■□□□ 1.65
CKS1B-203ENST00000368439 U2AF1L5P0DN76 240 aaPredicted RBP25.38■■□□□ 1.65
CKS1B-203ENST00000368439 ZEB1P37275 1124 aaPredicted RBP25.38■■□□□ 1.65
CKS1B-203ENST00000368439 U2AF1Q01081 240 aaKnown RBP eCLIP25.38■■□□□ 1.65
CKS1B-203ENST00000368439 SMIM5Q71RC9 77 aa25.38■■□□□ 1.65
CKS1B-203ENST00000368439 FLAD1Q8NFF5 587 aa25.38■■□□□ 1.65
CKS1B-203ENST00000368439 MAP3K5Q99683 1374 aa25.38■■□□□ 1.65
CKS1B-203ENST00000368439 ARXQ96QS3 562 aa25.37■■□□□ 1.65
CKS1B-203ENST00000368439 FCHSD2O94868 740 aa25.36■■□□□ 1.65
CKS1B-203ENST00000368439 IL17REQ8NFR9 667 aa25.36■■□□□ 1.65
CKS1B-203ENST00000368439 UBR2Q8IWV8 1755 aa25.36■■□□□ 1.65
CKS1B-203ENST00000368439 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.35■■□□□ 1.65
CKS1B-203ENST00000368439 GNAT3A8MTJ3 354 aa25.35■■□□□ 1.65
CKS1B-203ENST00000368439 MSH5O43196 834 aa25.35■■□□□ 1.65
CKS1B-203ENST00000368439 PTCD1O75127 700 aaKnown RBP25.35■■□□□ 1.65
CKS1B-203ENST00000368439 SSFA2P28290 1259 aa25.35■■□□□ 1.65
CKS1B-203ENST00000368439 RALBP1Q15311 655 aa25.35■■□□□ 1.65
CKS1B-203ENST00000368439 FHDC1Q9C0D6 1143 aaPredicted RBP25.35■■□□□ 1.65
CKS1B-203ENST00000368439 KCPQ6ZWJ8 1503 aa25.34■■□□□ 1.65
CKS1B-203ENST00000368439 PHF14O94880 888 aa25.33■■□□□ 1.65
CKS1B-203ENST00000368439 RC3H1Q5TC82 1133 aaKnown RBP25.33■■□□□ 1.65
CKS1B-203ENST00000368439 SYT17Q9BSW7 474 aa25.33■■□□□ 1.65
CKS1B-203ENST00000368439 CNTNAP4Q9C0A0 1308 aa25.33■■□□□ 1.64
CKS1B-203ENST00000368439 CEMIPQ8WUJ3 1361 aa25.32■■□□□ 1.64
CKS1B-203ENST00000368439 GNPATO15228 680 aa25.32■■□□□ 1.64
CKS1B-203ENST00000368439 SLC39A6Q13433 755 aa25.32■■□□□ 1.64
CKS1B-203ENST00000368439 POLD1P28340 1107 aa25.31■■□□□ 1.64
CKS1B-203ENST00000368439 MSL1Q68DK7 614 aa25.3■■□□□ 1.64
CKS1B-203ENST00000368439 DLG5Q8TDM6 1919 aa25.28■■□□□ 1.64
CKS1B-203ENST00000368439 C4AP0C0L4 1744 aa25.28■■□□□ 1.64
CKS1B-203ENST00000368439 PLEKHF1Q96S99 279 aa25.27■■□□□ 1.64
CKS1B-203ENST00000368439 RPS6KA4O75676 772 aa25.26■■□□□ 1.63
CKS1B-203ENST00000368439 RTCBQ9Y3I0 505 aaKnown RBP25.26■■□□□ 1.63
CKS1B-203ENST00000368439 MYBBP1AQ9BQG0 1328 aaKnown RBP25.26■■□□□ 1.63
CKS1B-203ENST00000368439 CRKLP46109 303 aaKnown RBP25.25■■□□□ 1.63
CKS1B-203ENST00000368439 TEFQ10587 303 aa25.25■■□□□ 1.63
CKS1B-203ENST00000368439 DNAJC10Q8IXB1 793 aa25.25■■□□□ 1.63
CKS1B-203ENST00000368439 INTS5Q6P9B9 1019 aaKnown RBP25.24■■□□□ 1.63
CKS1B-203ENST00000368439 ADRA2BP18089 450 aa25.23■■□□□ 1.63
CKS1B-203ENST00000368439 TRAPPC3LQ5T215 181 aa25.23■■□□□ 1.63
CKS1B-203ENST00000368439 VSIG10Q8N0Z9 540 aa25.23■■□□□ 1.63
CKS1B-203ENST00000368439 ARHGEF1Q92888 912 aaKnown RBP25.23■■□□□ 1.63
CKS1B-203ENST00000368439 CYP19A1P11511 503 aaPredicted RBP25.21■■□□□ 1.63
CKS1B-203ENST00000368439 ZNF790Q6PG37 636 aa25.21■■□□□ 1.63
CKS1B-203ENST00000368439 MCM10Q7L590 875 aa25.21■■□□□ 1.63
CKS1B-203ENST00000368439 HTATSF1O43719 755 aaKnown RBP25.2■■□□□ 1.62
CKS1B-203ENST00000368439 PRKRIP1Q9H875 184 aaPredicted RBP25.2■■□□□ 1.62
CKS1B-203ENST00000368439 DCTN1Q14203 1278 aa25.19■■□□□ 1.62
CKS1B-203ENST00000368439 ZNF496Q96IT1 587 aaPredicted RBP25.19■■□□□ 1.62
CKS1B-203ENST00000368439 TTC5Q8N0Z6 440 aa25.18■■□□□ 1.62
CKS1B-203ENST00000368439 NLGN2Q8NFZ4 835 aa25.18■■□□□ 1.62
CKS1B-203ENST00000368439 CCDC87Q9NVE4 849 aa25.18■■□□□ 1.62
CKS1B-203ENST00000368439 HEG1Q9ULI3 1381 aa25.18■■□□□ 1.62
CKS1B-203ENST00000368439 UTRNP46939 3433 aa25.17■■□□□ 1.62
CKS1B-203ENST00000368439 KCNQ3O43525 872 aa25.17■■□□□ 1.62
CKS1B-203ENST00000368439 KLHL34Q8N239 644 aa25.17■■□□□ 1.62
CKS1B-203ENST00000368439 RTF1Q92541 710 aaKnown RBP25.17■■□□□ 1.62
CKS1B-203ENST00000368439 BTBD11A6QL63 1104 aa25.16■■□□□ 1.62
CKS1B-203ENST00000368439 GYS1P13807 737 aa25.16■■□□□ 1.62
CKS1B-203ENST00000368439 SOS1Q07889 1333 aaPredicted RBP25.15■■□□□ 1.62
CKS1B-203ENST00000368439 RFC4P35249 363 aa25.15■■□□□ 1.62
CKS1B-203ENST00000368439 NFE2L2Q16236 605 aa25.15■■□□□ 1.62
CKS1B-203ENST00000368439 PNNQ9H307 717 aaKnown RBP25.14■■□□□ 1.62
CKS1B-203ENST00000368439 ZBTB1Q9Y2K1 713 aa25.14■■□□□ 1.62
CKS1B-203ENST00000368439 NEFMP07197 916 aa25.13■■□□□ 1.61
CKS1B-203ENST00000368439 NLGN1Q8N2Q7 840 aa25.13■■□□□ 1.61
CKS1B-203ENST00000368439 CD2APQ9Y5K6 639 aa25.13■■□□□ 1.61
CKS1B-203ENST00000368439 KIF13BQ9NQT8 1826 aa25.13■■□□□ 1.61
CKS1B-203ENST00000368439 USP42Q9H9J4 1324 aaKnown RBP25.12■■□□□ 1.61
CKS1B-203ENST00000368439 DCAF8L1A6NGE4 600 aa25.12■■□□□ 1.61
CKS1B-203ENST00000368439 MMP10P09238 476 aa25.12■■□□□ 1.61
CKS1B-203ENST00000368439 FMNL2Q96PY5 1086 aa25.12■■□□□ 1.61
CKS1B-203ENST00000368439 SRP68Q9UHB9 627 aaKnown RBP25.12■■□□□ 1.61
CKS1B-203ENST00000368439 KDM3BQ7LBC6 1761 aa25.11■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 408.3 ms