RNA–Protein interactions for RNA: ENST00000368019.5

USF1-201, Transcript of upstream transcription factor 1, humanhuman

TSL 5 BASIC

Gene USF1, Length 998 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-201ENST00000368019 C8orf34Q49A92 452 aa14.78□□□□□ -0.04
USF1-201ENST00000368019 NCBP3Q53F19 620 aaKnown RBP14.78□□□□□ -0.04
USF1-201ENST00000368019 NBPF6Q5VWK0 638 aa14.78□□□□□ -0.04
USF1-201ENST00000368019 SLC16A10Q8TF71 515 aa14.78□□□□□ -0.04
USF1-201ENST00000368019 NBPF4Q96M43 638 aa14.78□□□□□ -0.04
USF1-201ENST00000368019 KIF20BQ96Q89 1820 aa14.78□□□□□ -0.04
USF1-201ENST00000368019 CGNL1Q0VF96 1302 aa14.77□□□□□ -0.04
USF1-201ENST00000368019 PNPLA7Q6ZV29 1317 aa14.77□□□□□ -0.04
USF1-201ENST00000368019 PLIN1O60240 522 aa14.77□□□□□ -0.05
USF1-201ENST00000368019 GSE1Q14687 1217 aa14.77□□□□□ -0.05
USF1-201ENST00000368019 RRS1Q15050 365 aaKnown RBP14.77□□□□□ -0.05
USF1-201ENST00000368019 LAS1LQ9Y4W2 734 aaKnown RBP14.77□□□□□ -0.05
USF1-201ENST00000368019 E9PSI1 815 aa14.76□□□□□ -0.05
USF1-201ENST00000368019 PDE3AQ14432 1141 aa14.76□□□□□ -0.05
USF1-201ENST00000368019 GGNBP2Q9H3C7 697 aa14.76□□□□□ -0.05
USF1-201ENST00000368019 DAXXQ9UER7 740 aaPredicted RBP14.76□□□□□ -0.05
USF1-201ENST00000368019 SALL2Q9Y467 1007 aaPredicted RBP14.76□□□□□ -0.05
USF1-201ENST00000368019 MAPK8IP3Q9UPT6 1336 aa14.75□□□□□ -0.05
USF1-201ENST00000368019 KCNQ4P56696 695 aa14.75□□□□□ -0.05
USF1-201ENST00000368019 NFKBIBQ15653 356 aa14.75□□□□□ -0.05
USF1-201ENST00000368019 ZNF784Q8NCA9 323 aaPredicted RBP14.74□□□□□ -0.05
USF1-201ENST00000368019 SYTL4Q96C24 671 aaPredicted RBP14.74□□□□□ -0.05
USF1-201ENST00000368019 KIF24Q5T7B8 1368 aa14.73□□□□□ -0.05
USF1-201ENST00000368019 TAF1LQ8IZX4 1826 aa14.73□□□□□ -0.05
USF1-201ENST00000368019 HSP90AB2PQ58FF8 381 aa14.73□□□□□ -0.05
USF1-201ENST00000368019 C20orf194Q5TEA3 1177 aa14.73□□□□□ -0.05
USF1-201ENST00000368019 USHBP1Q8N6Y0 703 aa14.73□□□□□ -0.05
USF1-201ENST00000368019 GOLGB1Q14789 3259 aaKnown RBP14.73□□□□□ -0.05
USF1-201ENST00000368019 ITGB4P16144 1822 aa14.73□□□□□ -0.05
USF1-201ENST00000368019 SENP3-EIF4A1A0A087X0R7 540 aa14.72□□□□□ -0.05
USF1-201ENST00000368019 CARD14Q9BXL6 1004 aa14.72□□□□□ -0.05
USF1-201ENST00000368019 TFCP2L1Q9NZI6 479 aa14.72□□□□□ -0.05
USF1-201ENST00000368019 RAPGEF4Q8WZA2 1011 aa14.71□□□□□ -0.05
USF1-201ENST00000368019 CCNL1Q9UK58 526 aaPredicted RBP14.71□□□□□ -0.05
USF1-201ENST00000368019 ANKRD26Q9UPS8 1709 aa14.71□□□□□ -0.05
USF1-201ENST00000368019 FLT4P35916 1363 aa14.71□□□□□ -0.06
USF1-201ENST00000368019 C5P01031 1676 aa14.71□□□□□ -0.06
USF1-201ENST00000368019 MAP2P11137 1827 aaKnown RBP14.71□□□□□ -0.06
USF1-201ENST00000368019 PKD1L3Q7Z443 1732 aa14.7□□□□□ -0.06
USF1-201ENST00000368019 TOGARAM1Q9Y4F4 1720 aa14.7□□□□□ -0.06
USF1-201ENST00000368019 NCAPD2Q15021 1401 aa14.7□□□□□ -0.06
USF1-201ENST00000368019 POLD1P28340 1107 aa14.7□□□□□ -0.06
USF1-201ENST00000368019 TATP17735 454 aaPredicted RBP14.69□□□□□ -0.06
USF1-201ENST00000368019 COL23A1Q86Y22 540 aaPredicted RBP14.69□□□□□ -0.06
USF1-201ENST00000368019 CYP27B1O15528 508 aa14.68□□□□□ -0.06
USF1-201ENST00000368019 PCDH11XQ9BZA7 1347 aa14.67□□□□□ -0.06
USF1-201ENST00000368019 PCDH11YQ9BZA8 1340 aa14.67□□□□□ -0.06
USF1-201ENST00000368019 NSD3Q9BZ95 1437 aa14.66□□□□□ -0.06
USF1-201ENST00000368019 GPR162Q16538 588 aa14.66□□□□□ -0.06
USF1-201ENST00000368019 NLGN2Q8NFZ4 835 aa14.66□□□□□ -0.06
USF1-201ENST00000368019 EMILIN1Q9Y6C2 1016 aa14.66□□□□□ -0.06
USF1-201ENST00000368019 UBR3Q6ZT12 1888 aa14.65□□□□□ -0.06
USF1-201ENST00000368019 BECN1Q14457 450 aa14.65□□□□□ -0.06
USF1-201ENST00000368019 NKX1-1Q15270 411 aaPredicted RBP14.65□□□□□ -0.06
USF1-201ENST00000368019 IL27Q8NEV9 243 aa14.65□□□□□ -0.06
USF1-201ENST00000368019 C4BP0C0L5 1744 aa14.64□□□□□ -0.07
USF1-201ENST00000368019 PALLDQ8WX93 1383 aa14.64□□□□□ -0.07
USF1-201ENST00000368019 CCDC27Q2M243 656 aa14.64□□□□□ -0.07
USF1-201ENST00000368019 KLHL34Q8N239 644 aa14.64□□□□□ -0.07
USF1-201ENST00000368019 HMGB2P26583 209 aaKnown RBP14.63□□□□□ -0.07
USF1-201ENST00000368019 MPRIPQ6WCQ1 1025 aa14.63□□□□□ -0.07
USF1-201ENST00000368019 CLUAP1Q96AJ1 413 aa14.63□□□□□ -0.07
USF1-201ENST00000368019 APAF1O14727 1248 aa14.62□□□□□ -0.07
USF1-201ENST00000368019 WDR63Q8IWG1 891 aa14.62□□□□□ -0.07
USF1-201ENST00000368019 FLAD1Q8NFF5 587 aa14.62□□□□□ -0.07
USF1-201ENST00000368019 YBX3P16989 372 aaKnown RBP eCLIP14.61□□□□□ -0.07
USF1-201ENST00000368019 AMIGO3Q86WK7 504 aa14.61□□□□□ -0.07
USF1-201ENST00000368019 PIGBQ92521 554 aa14.61□□□□□ -0.07
USF1-201ENST00000368019 FRAT1Q92837 279 aaPredicted RBP14.61□□□□□ -0.07
USF1-201ENST00000368019 SMARCC1Q92922 1105 aaPredicted RBP14.61□□□□□ -0.07
USF1-201ENST00000368019 EYA1Q99502 592 aa14.61□□□□□ -0.07
USF1-201ENST00000368019 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.61□□□□□ -0.07
USF1-201ENST00000368019 CT47B1P0C2W7 299 aaPredicted RBP14.6□□□□□ -0.07
USF1-201ENST00000368019 C1QTNF8P60827 252 aa14.6□□□□□ -0.07
USF1-201ENST00000368019 MSL1Q68DK7 614 aa14.6□□□□□ -0.07
USF1-201ENST00000368019 POLKQ9UBT6 870 aa14.6□□□□□ -0.07
USF1-201ENST00000368019 FAM43AQ8N2R8 423 aa14.59□□□□□ -0.07
USF1-201ENST00000368019 SPG7Q9UQ90 795 aa14.59□□□□□ -0.07
USF1-201ENST00000368019 CD2APQ9Y5K6 639 aa14.59□□□□□ -0.07
USF1-201ENST00000368019 GRIN3BO60391 1043 aa14.58□□□□□ -0.08
USF1-201ENST00000368019 WWC1Q8IX03 1113 aa14.58□□□□□ -0.08
USF1-201ENST00000368019 RUNDC1Q96C34 613 aa14.58□□□□□ -0.08
USF1-201ENST00000368019 RGS3P49796 1198 aa14.57□□□□□ -0.08
USF1-201ENST00000368019 SKAP1Q86WV1 359 aa14.57□□□□□ -0.08
USF1-201ENST00000368019 SPINK5Q9NQ38 1064 aaPredicted RBP14.57□□□□□ -0.08
USF1-201ENST00000368019 LOC102724428A0A0B4J2F2 783 aa14.56□□□□□ -0.08
USF1-201ENST00000368019 PHKG2P15735 406 aa14.56□□□□□ -0.08
USF1-201ENST00000368019 SIK1P57059 783 aa14.56□□□□□ -0.08
USF1-201ENST00000368019 L1TD1Q5T7N2 865 aaKnown RBP14.56□□□□□ -0.08
USF1-201ENST00000368019 SMIM5Q71RC9 77 aa14.56□□□□□ -0.08
USF1-201ENST00000368019 PLEKHG2Q9H7P9 1386 aa14.56□□□□□ -0.08
USF1-201ENST00000368019 BCAR3O75815 825 aa14.55□□□□□ -0.08
USF1-201ENST00000368019 IGHDP01880 384 aa14.55□□□□□ -0.08
USF1-201ENST00000368019 EIF4A2Q14240 407 aaKnown RBP14.55□□□□□ -0.08
USF1-201ENST00000368019 IFNL2Q8IZJ0 200 aa14.55□□□□□ -0.08
USF1-201ENST00000368019 LINC00116Q8NCU8 138 aa14.55□□□□□ -0.08
USF1-201ENST00000368019 AK7Q96M32 723 aa14.55□□□□□ -0.08
USF1-201ENST00000368019 UPF2Q9HAU5 1272 aaKnown RBP14.55□□□□□ -0.08
USF1-201ENST00000368019 ASAP1Q9ULH1 1129 aa14.55□□□□□ -0.08
USF1-201ENST00000368019 ZNF831Q5JPB2 1677 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms