RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 QTRT2Q9H974 415 aaKnown RBP25.7■■□□□ 1.7
CLN3-205ENST00000359984 MRC1P22897 1456 aa25.69■■□□□ 1.7
CLN3-205ENST00000359984 GLI3P10071 1580 aa25.69■■□□□ 1.7
CLN3-205ENST00000359984 ELL2O00472 640 aaPredicted RBP25.69■■□□□ 1.7
CLN3-205ENST00000359984 RARSP54136 660 aaKnown RBP25.69■■□□□ 1.7
CLN3-205ENST00000359984 SIPA1L3O60292 1781 aaPredicted RBP25.69■■□□□ 1.7
CLN3-205ENST00000359984 VAMP4O75379 141 aa25.68■■□□□ 1.7
CLN3-205ENST00000359984 ERVV-2B6SEH9 535 aa25.68■■□□□ 1.7
CLN3-205ENST00000359984 CABP4P57796 275 aa25.68■■□□□ 1.7
CLN3-205ENST00000359984 TWISTNBQ3B726 338 aaPredicted RBP25.68■■□□□ 1.7
CLN3-205ENST00000359984 KCNQ3O43525 872 aa25.67■■□□□ 1.7
CLN3-205ENST00000359984 BCAR3O75815 825 aa25.66■■□□□ 1.7
CLN3-205ENST00000359984 MARCH10Q8NA82 808 aaPredicted RBP25.66■■□□□ 1.7
CLN3-205ENST00000359984 KDM3BQ7LBC6 1761 aa25.64■■□□□ 1.7
CLN3-205ENST00000359984 RRP1P56182 461 aaKnown RBP25.64■■□□□ 1.7
CLN3-205ENST00000359984 EIF4A1P60842 406 aaKnown RBP25.64■■□□□ 1.69
CLN3-205ENST00000359984 A0A0G2JS52 829 aa25.63■■□□□ 1.69
CLN3-205ENST00000359984 ONECUT3O60422 494 aaPredicted RBP25.63■■□□□ 1.69
CLN3-205ENST00000359984 MYT1Q01538 1121 aa25.63■■□□□ 1.69
CLN3-205ENST00000359984 ZNF428Q96B54 188 aa25.63■■□□□ 1.69
CLN3-205ENST00000359984 THSD7AQ9UPZ6 1657 aa25.63■■□□□ 1.69
CLN3-205ENST00000359984 SLC39A6Q13433 755 aa25.62■■□□□ 1.69
CLN3-205ENST00000359984 BCL2L13Q9BXK5 485 aa25.62■■□□□ 1.69
CLN3-205ENST00000359984 TOGARAM1Q9Y4F4 1720 aa25.62■■□□□ 1.69
CLN3-205ENST00000359984 ZNF772Q68DY9 489 aaPredicted RBP25.62■■□□□ 1.69
CLN3-205ENST00000359984 SSH1Q8WYL5 1049 aa25.62■■□□□ 1.69
CLN3-205ENST00000359984 ZNF790Q6PG37 636 aa25.61■■□□□ 1.69
CLN3-205ENST00000359984 PLIN1O60240 522 aa25.6■■□□□ 1.69
CLN3-205ENST00000359984 ALDH1L2Q3SY69 923 aa25.6■■□□□ 1.69
CLN3-205ENST00000359984 NEFLP07196 543 aa25.59■■□□□ 1.69
CLN3-205ENST00000359984 IRX6P78412 446 aaPredicted RBP25.58■■□□□ 1.69
CLN3-205ENST00000359984 SMC4Q9NTJ3 1288 aa25.58■■□□□ 1.69
CLN3-205ENST00000359984 TMOD3Q9NYL9 352 aa25.58■■□□□ 1.69
CLN3-205ENST00000359984 SEPT12Q8IYM1 358 aa25.57■■□□□ 1.68
CLN3-205ENST00000359984 SOS1Q07889 1333 aaPredicted RBP25.57■■□□□ 1.68
CLN3-205ENST00000359984 HEG1Q9ULI3 1381 aa25.56■■□□□ 1.68
CLN3-205ENST00000359984 PIGBQ92521 554 aa25.56■■□□□ 1.68
CLN3-205ENST00000359984 TCERG1O14776 1098 aaKnown RBP25.55■■□□□ 1.68
CLN3-205ENST00000359984 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.55■■□□□ 1.68
CLN3-205ENST00000359984 PRIM1P49642 420 aaKnown RBP25.55■■□□□ 1.68
CLN3-205ENST00000359984 FKBP8Q14318 412 aa25.55■■□□□ 1.68
CLN3-205ENST00000359984 TTC5Q8N0Z6 440 aa25.55■■□□□ 1.68
CLN3-205ENST00000359984 MRPL50Q8N5N7 158 aaKnown RBP25.54■■□□□ 1.68
CLN3-205ENST00000359984 HOXB7P09629 217 aa25.53■■□□□ 1.68
CLN3-205ENST00000359984 ZNF496Q96IT1 587 aaPredicted RBP25.53■■□□□ 1.68
CLN3-205ENST00000359984 BCL9O00512 1426 aa25.53■■□□□ 1.68
CLN3-205ENST00000359984 GIGYF1O75420 1035 aaPredicted RBP25.53■■□□□ 1.68
CLN3-205ENST00000359984 FRAT1Q92837 279 aaPredicted RBP25.53■■□□□ 1.68
CLN3-205ENST00000359984 ITGB4P16144 1822 aa25.52■■□□□ 1.68
CLN3-205ENST00000359984 BRPF1P55201 1214 aaPredicted RBP25.52■■□□□ 1.68
CLN3-205ENST00000359984 RBM6P78332 1123 aaKnown RBP25.52■■□□□ 1.68
CLN3-205ENST00000359984 SYTL4Q96C24 671 aaPredicted RBP25.52■■□□□ 1.68
CLN3-205ENST00000359984 DOT1LQ8TEK3 1739 aa25.52■■□□□ 1.68
CLN3-205ENST00000359984 ACSBG1Q96GR2 724 aa25.51■■□□□ 1.67
CLN3-205ENST00000359984 FMNL2Q96PY5 1086 aa25.51■■□□□ 1.67
CLN3-205ENST00000359984 RGS17Q9UGC6 210 aaPredicted RBP25.51■■□□□ 1.67
CLN3-205ENST00000359984 ASAP1Q9ULH1 1129 aa25.5■■□□□ 1.67
CLN3-205ENST00000359984 PAPPAQ13219 1627 aa25.5■■□□□ 1.67
CLN3-205ENST00000359984 PRAMEF22A3QJZ6 481 aa25.49■■□□□ 1.67
CLN3-205ENST00000359984 CANXP27824 592 aaKnown RBP25.49■■□□□ 1.67
CLN3-205ENST00000359984 CCDC30Q5VVM6 783 aa25.49■■□□□ 1.67
CLN3-205ENST00000359984 NECTIN2Q92692 538 aa25.49■■□□□ 1.67
CLN3-205ENST00000359984 NOB1Q9ULX3 412 aaKnown RBP25.49■■□□□ 1.67
CLN3-205ENST00000359984 C20orf194Q5TEA3 1177 aa25.49■■□□□ 1.67
CLN3-205ENST00000359984 HDGFL1Q5TGJ6 251 aa25.49■■□□□ 1.67
CLN3-205ENST00000359984 ATG3Q9NT62 314 aa25.49■■□□□ 1.67
CLN3-205ENST00000359984 KIF16BQ96L93 1317 aa25.48■■□□□ 1.67
CLN3-205ENST00000359984 EIF2S2P20042 333 aaKnown RBP25.47■■□□□ 1.67
CLN3-205ENST00000359984 FAM182BQ5T319 152 aa25.47■■□□□ 1.67
CLN3-205ENST00000359984 KAT6BQ8WYB5 2073 aa25.47■■□□□ 1.67
CLN3-205ENST00000359984 SNRPA1P09661 255 aaKnown RBP25.47■■□□□ 1.67
CLN3-205ENST00000359984 ZKSCAN2Q63HK3 967 aa25.47■■□□□ 1.67
CLN3-205ENST00000359984 KCPQ6ZWJ8 1503 aa25.46■■□□□ 1.67
CLN3-205ENST00000359984 SLC4A2P04920 1241 aa25.46■■□□□ 1.67
CLN3-205ENST00000359984 UBR2Q8IWV8 1755 aa25.45■■□□□ 1.67
CLN3-205ENST00000359984 KCNQ2O43526 872 aa25.45■■□□□ 1.67
CLN3-205ENST00000359984 PTCD1O75127 700 aaKnown RBP25.45■■□□□ 1.67
CLN3-205ENST00000359984 STK31Q9BXU1 1019 aa25.45■■□□□ 1.67
CLN3-205ENST00000359984 TNNQ9UQP3 1299 aa25.45■■□□□ 1.67
CLN3-205ENST00000359984 RXRBP28702 533 aa25.45■■□□□ 1.66
CLN3-205ENST00000359984 CHMP4AQ9BY43 222 aa25.45■■□□□ 1.66
CLN3-205ENST00000359984 IPO8O15397 1037 aaKnown RBP25.44■■□□□ 1.66
CLN3-205ENST00000359984 PDE3AQ14432 1141 aa25.43■■□□□ 1.66
CLN3-205ENST00000359984 POTEAQ6S8J7 498 aa25.43■■□□□ 1.66
CLN3-205ENST00000359984 ATF7IPQ6VMQ6 1270 aa25.43■■□□□ 1.66
CLN3-205ENST00000359984 TRIM27P14373 513 aa25.42■■□□□ 1.66
CLN3-205ENST00000359984 ARHGAP45Q92619 1136 aa25.42■■□□□ 1.66
CLN3-205ENST00000359984 USP16Q9Y5T5 823 aa25.42■■□□□ 1.66
CLN3-205ENST00000359984 C5P01031 1676 aa25.41■■□□□ 1.66
CLN3-205ENST00000359984 KRT27Q7Z3Y8 459 aa25.41■■□□□ 1.66
CLN3-205ENST00000359984 CHPF2Q9P2E5 772 aa25.41■■□□□ 1.66
CLN3-205ENST00000359984 G2E3Q7L622 706 aa25.4■■□□□ 1.66
CLN3-205ENST00000359984 PANK1Q8TE04 598 aa25.4■■□□□ 1.66
CLN3-205ENST00000359984 CLUAP1Q96AJ1 413 aa25.4■■□□□ 1.66
CLN3-205ENST00000359984 RLBP1P12271 317 aa25.4■■□□□ 1.66
CLN3-205ENST00000359984 CRBNQ96SW2 442 aa25.4■■□□□ 1.66
CLN3-205ENST00000359984 RBM42Q9BTD8 480 aaKnown RBP25.39■■□□□ 1.66
CLN3-205ENST00000359984 BRWD3Q6RI45 1802 aa25.39■■□□□ 1.65
CLN3-205ENST00000359984 PTF1AQ7RTS3 328 aa25.38■■□□□ 1.65
CLN3-205ENST00000359984 EXOC6Q8TAG9 804 aa25.38■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms