RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 FKBP15Q5T1M5 1219 aa18.68■□□□□ 0.58
COL18A1-203ENST00000359759 CCDC183Q5T5S1 534 aa18.68■□□□□ 0.58
COL18A1-203ENST00000359759 STAMBPO95630 424 aa18.67■□□□□ 0.58
COL18A1-203ENST00000359759 PPM1FP49593 454 aaPredicted RBP18.67■□□□□ 0.58
COL18A1-203ENST00000359759 PRAM1Q96QH2 718 aa18.67■□□□□ 0.58
COL18A1-203ENST00000359759 CTNNA3Q9UI47 895 aa18.67■□□□□ 0.58
COL18A1-203ENST00000359759 PUS7Q96PZ0 661 aaKnown RBP18.67■□□□□ 0.58
COL18A1-203ENST00000359759 PSMD1Q99460 953 aa18.66■□□□□ 0.58
COL18A1-203ENST00000359759 CCDC82Q8N4S0 544 aa18.66■□□□□ 0.58
COL18A1-203ENST00000359759 EXOC6BQ9Y2D4 811 aa18.66■□□□□ 0.58
COL18A1-203ENST00000359759 PTPRGP23470 1445 aa18.66■□□□□ 0.58
COL18A1-203ENST00000359759 AIDAQ96BJ3 306 aa18.66■□□□□ 0.58
COL18A1-203ENST00000359759 USP25Q9UHP3 1055 aa18.66■□□□□ 0.58
COL18A1-203ENST00000359759 TSG101Q99816 390 aa18.66■□□□□ 0.58
COL18A1-203ENST00000359759 BTBD11A6QL63 1104 aa18.66■□□□□ 0.58
COL18A1-203ENST00000359759 ANO10Q9NW15 660 aa18.66■□□□□ 0.58
COL18A1-203ENST00000359759 ZNF530Q6P9A1 599 aaPredicted RBP18.65■□□□□ 0.58
COL18A1-203ENST00000359759 MIS18AQ9NYP9 233 aa18.65■□□□□ 0.58
COL18A1-203ENST00000359759 GCOM1H8Y6P7 765 aaPredicted RBP18.65■□□□□ 0.58
COL18A1-203ENST00000359759 MYZAPP0CAP1 466 aa18.65■□□□□ 0.58
COL18A1-203ENST00000359759 CIZ1Q9ULV3 898 aaPredicted RBP18.65■□□□□ 0.58
COL18A1-203ENST00000359759 MINDY4BA8MYZ0 360 aa18.65■□□□□ 0.58
COL18A1-203ENST00000359759 LARP1Q6PKG0 1096 aaKnown RBP18.65■□□□□ 0.58
COL18A1-203ENST00000359759 PPP1R12BO60237 982 aaPredicted RBP18.65■□□□□ 0.58
COL18A1-203ENST00000359759 CETN2P41208 172 aa18.65■□□□□ 0.58
COL18A1-203ENST00000359759 KRT32Q14532 448 aa18.65■□□□□ 0.58
COL18A1-203ENST00000359759 PIP4K2BP78356 416 aa18.65■□□□□ 0.58
COL18A1-203ENST00000359759 TDRD12Q587J7 1177 aaKnown RBP18.65■□□□□ 0.58
COL18A1-203ENST00000359759 TMEM57Q8N5G2 664 aa18.65■□□□□ 0.58
COL18A1-203ENST00000359759 ABCF2Q9UG63 623 aa18.65■□□□□ 0.58
COL18A1-203ENST00000359759 ATP2C2O75185 946 aa18.64■□□□□ 0.58
COL18A1-203ENST00000359759 ISM2Q6H9L7 571 aa18.64■□□□□ 0.57
COL18A1-203ENST00000359759 CTR9Q6PD62 1173 aa18.64■□□□□ 0.57
COL18A1-203ENST00000359759 TXNDC2Q86VQ3 553 aa18.64■□□□□ 0.57
COL18A1-203ENST00000359759 SSFA2P28290 1259 aa18.64■□□□□ 0.57
COL18A1-203ENST00000359759 HLTFQ14527 1009 aaKnown RBP eCLIP18.64■□□□□ 0.576e-6■□□□□ 11.2
COL18A1-203ENST00000359759 SLC12A5Q9H2X9 1139 aa18.64■□□□□ 0.57
COL18A1-203ENST00000359759 LIG1P18858 919 aa18.64■□□□□ 0.57
COL18A1-203ENST00000359759 TOM1L2Q6ZVM7 507 aa18.64■□□□□ 0.57
COL18A1-203ENST00000359759 SMC1AQ14683 1233 aaKnown RBP18.63■□□□□ 0.57
COL18A1-203ENST00000359759 RRS1Q15050 365 aaKnown RBP18.63■□□□□ 0.57
COL18A1-203ENST00000359759 FAM107BQ9H098 131 aa18.63■□□□□ 0.57
COL18A1-203ENST00000359759 SEC63Q9UGP8 760 aaKnown RBP18.63■□□□□ 0.57
COL18A1-203ENST00000359759 FANCD2Q9BXW9 1451 aa18.63■□□□□ 0.57
COL18A1-203ENST00000359759 SPECC1Q5M775 1068 aa18.63■□□□□ 0.57
COL18A1-203ENST00000359759 MICALCLQ6ZW33 695 aa18.63■□□□□ 0.57
COL18A1-203ENST00000359759 TMC6Q7Z403 805 aa18.63■□□□□ 0.57
COL18A1-203ENST00000359759 TTC16Q8NEE8 873 aa18.63■□□□□ 0.57
COL18A1-203ENST00000359759 SCLT1Q96NL6 688 aa18.63■□□□□ 0.57
COL18A1-203ENST00000359759 CDK19Q9BWU1 502 aa18.63■□□□□ 0.57
COL18A1-203ENST00000359759 CALCOCO1Q9P1Z2 691 aa18.63■□□□□ 0.57
COL18A1-203ENST00000359759 BIN1O00499 593 aa18.63■□□□□ 0.57
COL18A1-203ENST00000359759 LMAN1P49257 510 aa18.63■□□□□ 0.57
COL18A1-203ENST00000359759 NUTM2BA6NNL0 878 aaPredicted RBP18.62■□□□□ 0.57
COL18A1-203ENST00000359759 NUTM2EB1AL46 878 aaPredicted RBP18.62■□□□□ 0.57
COL18A1-203ENST00000359759 NBPF1Q3BBV0 1214 aa18.62■□□□□ 0.57
COL18A1-203ENST00000359759 NUTM2AQ8IVF1 878 aaPredicted RBP18.62■□□□□ 0.57
COL18A1-203ENST00000359759 MYOM3Q5VTT5 1437 aa18.62■□□□□ 0.57
COL18A1-203ENST00000359759 RRBP1Q9P2E9 1410 aaKnown RBP18.62■□□□□ 0.57
COL18A1-203ENST00000359759 MAATS1Q7Z4T9 603 aa18.62■□□□□ 0.57
COL18A1-203ENST00000359759 CEP126Q9P2H0 1117 aa18.62■□□□□ 0.57
COL18A1-203ENST00000359759 KIF2AO00139 706 aaPredicted RBP18.62■□□□□ 0.57
COL18A1-203ENST00000359759 MCM3P25205 808 aa18.62■□□□□ 0.57
COL18A1-203ENST00000359759 ZSWIM4Q9H7M6 989 aa18.62■□□□□ 0.57
COL18A1-203ENST00000359759 GDPD2Q9HCC8 539 aa18.62■□□□□ 0.57
COL18A1-203ENST00000359759 PRPF4BQ13523 1007 aaKnown RBP18.62■□□□□ 0.57
COL18A1-203ENST00000359759 TMCO5BA8MYB1 307 aa18.61■□□□□ 0.57
COL18A1-203ENST00000359759 CCDC175P0C221 793 aa18.61■□□□□ 0.57
COL18A1-203ENST00000359759 SMARCC1Q92922 1105 aaPredicted RBP18.61■□□□□ 0.57
COL18A1-203ENST00000359759 SPTY2D1Q68D10 685 aaPredicted RBP18.61■□□□□ 0.57
COL18A1-203ENST00000359759 BOLA2Q9H3K6 86 aa18.61■□□□□ 0.57
COL18A1-203ENST00000359759 ZBTB9Q96C00 473 aa18.6■□□□□ 0.57
COL18A1-203ENST00000359759 CABP1Q9NZU7 370 aa18.6■□□□□ 0.57
COL18A1-203ENST00000359759 PAFAH1B1P43034 410 aa18.6■□□□□ 0.57
COL18A1-203ENST00000359759 WDR63Q8IWG1 891 aa18.6■□□□□ 0.57
COL18A1-203ENST00000359759 RBM27Q9P2N5 1060 aaKnown RBP18.6■□□□□ 0.57
COL18A1-203ENST00000359759 TRMT1LQ7Z2T5 733 aaKnown RBP18.59■□□□□ 0.57
COL18A1-203ENST00000359759 HOOK3Q86VS8 718 aa18.59■□□□□ 0.57
COL18A1-203ENST00000359759 CTNNA2P26232 953 aa18.59■□□□□ 0.57
COL18A1-203ENST00000359759 CNNM3Q8NE01 707 aa18.59■□□□□ 0.57
COL18A1-203ENST00000359759 USO1O60763 962 aaKnown RBP18.59■□□□□ 0.57
COL18A1-203ENST00000359759 CCT2P78371 535 aaKnown RBP18.59■□□□□ 0.57
COL18A1-203ENST00000359759 C8orf76Q96K31 380 aa18.59■□□□□ 0.57
COL18A1-203ENST00000359759 POLR3DP05423 398 aaPredicted RBP18.59■□□□□ 0.57
COL18A1-203ENST00000359759 METTL24Q5JXM2 366 aa18.58■□□□□ 0.57
COL18A1-203ENST00000359759 SPG7Q9UQ90 795 aa18.58■□□□□ 0.57
COL18A1-203ENST00000359759 FGD6Q6ZV73 1430 aa18.58■□□□□ 0.57
COL18A1-203ENST00000359759 YEATS4O95619 227 aa18.58■□□□□ 0.56
COL18A1-203ENST00000359759 CCDC184Q52MB2 194 aa18.58■□□□□ 0.56
COL18A1-203ENST00000359759 CCDC144CPQ8IYA2 1237 aa18.58■□□□□ 0.56
COL18A1-203ENST00000359759 TRIM21P19474 475 aaKnown RBP18.58■□□□□ 0.56
COL18A1-203ENST00000359759 VPS36Q86VN1 386 aa18.58■□□□□ 0.56
COL18A1-203ENST00000359759 PNISRQ8TF01 805 aaKnown RBP18.58■□□□□ 0.56
COL18A1-203ENST00000359759 ADCY5O95622 1261 aa18.58■□□□□ 0.56
COL18A1-203ENST00000359759 CCDC96Q2M329 555 aa18.58■□□□□ 0.56
COL18A1-203ENST00000359759 PPFIA3O75145 1194 aa18.57■□□□□ 0.56
COL18A1-203ENST00000359759 COMMD10Q9Y6G5 202 aa18.57■□□□□ 0.56
COL18A1-203ENST00000359759 MX1P20591 662 aa18.57■□□□□ 0.56
COL18A1-203ENST00000359759 IGHMBP2P38935 993 aaKnown RBP18.57■□□□□ 0.56
COL18A1-203ENST00000359759 FSIP1Q8NA03 581 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms