RNA–Protein interactions for RNA: ENST00000346436.10

CLCN6-202, Transcript of chloride voltage-gated channel 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLCN6, Length 5,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN6-202ENST00000346436 FIBPO43427 364 aa12.92□□□□□ -0.34
CLCN6-202ENST00000346436 SRCIN1Q9C0H9 1055 aa12.92□□□□□ -0.34
CLCN6-202ENST00000346436 PARP3Q9Y6F1 533 aa12.92□□□□□ -0.34
CLCN6-202ENST00000346436 PLCH2O75038 1416 aa12.92□□□□□ -0.34
CLCN6-202ENST00000346436 PTCD1O75127 700 aaKnown RBP12.92□□□□□ -0.34
CLCN6-202ENST00000346436 PSMA5P28066 241 aa12.92□□□□□ -0.34
CLCN6-202ENST00000346436 LRRCC1Q9C099 1032 aa12.92□□□□□ -0.34
CLCN6-202ENST00000346436 MBIPQ9NS73 344 aa12.92□□□□□ -0.34
CLCN6-202ENST00000346436 EIF4G3O43432 1585 aaKnown RBP12.92□□□□□ -0.34
CLCN6-202ENST00000346436 ESPNB1AK53 854 aa12.92□□□□□ -0.34
CLCN6-202ENST00000346436 TNIP1Q15025 636 aa12.92□□□□□ -0.34
CLCN6-202ENST00000346436 DDX46Q7L014 1031 aaKnown RBP12.92□□□□□ -0.34
CLCN6-202ENST00000346436 JDP2Q8WYK2 163 aa12.92□□□□□ -0.34
CLCN6-202ENST00000346436 CDCA7Q9BWT1 371 aaPredicted RBP12.92□□□□□ -0.34
CLCN6-202ENST00000346436 C6orf229H3BNL8 230 aa12.91□□□□□ -0.34
CLCN6-202ENST00000346436 HSPA2P54652 639 aa12.91□□□□□ -0.34
CLCN6-202ENST00000346436 ZNF219Q9P2Y4 722 aaPredicted RBP12.91□□□□□ -0.34
CLCN6-202ENST00000346436 NUP160Q12769 1436 aa12.91□□□□□ -0.34
CLCN6-202ENST00000346436 ALDH1L2Q3SY69 923 aa12.91□□□□□ -0.34
CLCN6-202ENST00000346436 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.91□□□□□ -0.34
CLCN6-202ENST00000346436 NUTM1Q86Y26 1132 aa12.91□□□□□ -0.34
CLCN6-202ENST00000346436 ZNF592Q92610 1267 aa12.91□□□□□ -0.34
CLCN6-202ENST00000346436 DNAJC2Q99543 621 aaKnown RBP12.91□□□□□ -0.34
CLCN6-202ENST00000346436 ZMYM4Q5VZL5 1548 aa12.91□□□□□ -0.34
CLCN6-202ENST00000346436 SHANK2Q9UPX8 1470 aa12.91□□□□□ -0.34
CLCN6-202ENST00000346436 GNAT3A8MTJ3 354 aa12.91□□□□□ -0.34
CLCN6-202ENST00000346436 RDXP35241 583 aaKnown RBP12.91□□□□□ -0.34
CLCN6-202ENST00000346436 C19orf44Q9H6X5 657 aa12.91□□□□□ -0.34
CLCN6-202ENST00000346436 GRM1Q13255 1194 aa12.91□□□□□ -0.34
CLCN6-202ENST00000346436 PPP1R42Q7Z4L9 355 aa12.91□□□□□ -0.34
CLCN6-202ENST00000346436 BICD2Q8TD16 824 aa12.91□□□□□ -0.34
CLCN6-202ENST00000346436 UPF3BQ9BZI7 483 aaKnown RBP12.91□□□□□ -0.34
CLCN6-202ENST00000346436 ZRANB1Q9UGI0 708 aa12.91□□□□□ -0.34
CLCN6-202ENST00000346436 EPS15P42566 896 aa12.9□□□□□ -0.34
CLCN6-202ENST00000346436 TFCP2L1Q9NZI6 479 aa12.9□□□□□ -0.34
CLCN6-202ENST00000346436 TXLNAP40222 546 aa12.9□□□□□ -0.34
CLCN6-202ENST00000346436 CCDC173Q0VFZ6 552 aa12.9□□□□□ -0.34
CLCN6-202ENST00000346436 CCT4P50991 539 aaKnown RBP12.9□□□□□ -0.34
CLCN6-202ENST00000346436 IFNL2Q8IZJ0 200 aa12.9□□□□□ -0.34
CLCN6-202ENST00000346436 IFT57Q9NWB7 429 aa12.9□□□□□ -0.34
CLCN6-202ENST00000346436 LRP2BPQ9P2M1 347 aa12.9□□□□□ -0.34
CLCN6-202ENST00000346436 LARP6Q9BRS8 491 aaKnown RBP12.9□□□□□ -0.34
CLCN6-202ENST00000346436 UHRF1BP1LA0JNW5 1464 aa12.9□□□□□ -0.35
CLCN6-202ENST00000346436 KDM5CP41229 1560 aa12.89□□□□□ -0.35
CLCN6-202ENST00000346436 KRT18P05783 430 aaKnown RBP12.89□□□□□ -0.35
CLCN6-202ENST00000346436 SYCE3A1L190 88 aa12.89□□□□□ -0.35
CLCN6-202ENST00000346436 RRP12Q5JTH9 1297 aaKnown RBP12.89□□□□□ -0.35
CLCN6-202ENST00000346436 TSPYL6Q8N831 410 aa12.89□□□□□ -0.35
CLCN6-202ENST00000346436 CDC5LQ99459 802 aaKnown RBP12.89□□□□□ -0.35
CLCN6-202ENST00000346436 AKAP2Q9Y2D5 859 aa12.89□□□□□ -0.35
CLCN6-202ENST00000346436 PIK3C2GO75747 1445 aa12.89□□□□□ -0.35
CLCN6-202ENST00000346436 BLMP54132 1417 aaPredicted RBP12.89□□□□□ -0.35
CLCN6-202ENST00000346436 MYCNP04198 464 aaPredicted RBP12.89□□□□□ -0.35
CLCN6-202ENST00000346436 ZNF710Q8N1W2 664 aa12.89□□□□□ -0.35
CLCN6-202ENST00000346436 SIL1Q9H173 461 aa12.89□□□□□ -0.35
CLCN6-202ENST00000346436 LDHCP07864 332 aa12.88□□□□□ -0.35
CLCN6-202ENST00000346436 PPP4R3AQ6IN85 833 aa12.88□□□□□ -0.35
CLCN6-202ENST00000346436 CIZ1Q9ULV3 898 aaPredicted RBP12.88□□□□□ -0.35
CLCN6-202ENST00000346436 POLR3AO14802 1390 aaPredicted RBP12.88□□□□□ -0.35
CLCN6-202ENST00000346436 NUCB1Q02818 461 aa12.88□□□□□ -0.35
CLCN6-202ENST00000346436 FMNL2Q96PY5 1086 aa12.88□□□□□ -0.35
CLCN6-202ENST00000346436 TSPY26PQ9H489 355 aa12.88□□□□□ -0.35
CLCN6-202ENST00000346436 ASXL2Q76L83 1435 aa12.88□□□□□ -0.35
CLCN6-202ENST00000346436 XRCC6P12956 609 aaKnown RBP eCLIP12.88□□□□□ -0.35
CLCN6-202ENST00000346436 OGFOD1Q8N543 542 aa12.88□□□□□ -0.35
CLCN6-202ENST00000346436 CWC27Q6UX04 472 aaKnown RBP12.87□□□□□ -0.35
CLCN6-202ENST00000346436 RPAP2Q8IXW5 612 aaPredicted RBP12.87□□□□□ -0.35
CLCN6-202ENST00000346436 USHBP1Q8N6Y0 703 aa12.87□□□□□ -0.35
CLCN6-202ENST00000346436 SCLT1Q96NL6 688 aa12.87□□□□□ -0.35
CLCN6-202ENST00000346436 EIF2AK4Q9P2K8 1649 aaKnown RBP12.87□□□□□ -0.35
CLCN6-202ENST00000346436 ABCC11Q96J66 1382 aa12.87□□□□□ -0.35
CLCN6-202ENST00000346436 BECN2A8MW95 431 aa12.87□□□□□ -0.35
CLCN6-202ENST00000346436 GOLGA6L19H0YKK7 550 aa12.87□□□□□ -0.35
CLCN6-202ENST00000346436 KDM4AO75164 1064 aa12.87□□□□□ -0.35
CLCN6-202ENST00000346436 DZIP1Q86YF9 867 aaKnown RBP12.87□□□□□ -0.35
CLCN6-202ENST00000346436 WASLO00401 505 aaPredicted RBP12.87□□□□□ -0.35
CLCN6-202ENST00000346436 STK3Q13188 491 aa12.87□□□□□ -0.35
CLCN6-202ENST00000346436 ZNF76P36508 570 aa12.87□□□□□ -0.35
CLCN6-202ENST00000346436 HDAC1Q13547 482 aaPredicted RBP12.87□□□□□ -0.35
CLCN6-202ENST00000346436 SRGAP3O43295 1099 aa12.86□□□□□ -0.35
CLCN6-202ENST00000346436 DESP17661 470 aa12.86□□□□□ -0.35
CLCN6-202ENST00000346436 KRT24Q2M2I5 525 aa12.86□□□□□ -0.35
CLCN6-202ENST00000346436 C8orf58Q8NAV2 365 aa12.86□□□□□ -0.35
CLCN6-202ENST00000346436 SPC24Q8NBT2 197 aa12.86□□□□□ -0.35
CLCN6-202ENST00000346436 EHMT1Q9H9B1 1298 aa12.86□□□□□ -0.35
CLCN6-202ENST00000346436 TRMT112Q9UI30 125 aaKnown RBP12.86□□□□□ -0.35
CLCN6-202ENST00000346436 CCDC70Q6NSX1 233 aa12.86□□□□□ -0.35
CLCN6-202ENST00000346436 USP5P45974 858 aa12.86□□□□□ -0.35
CLCN6-202ENST00000346436 BMP2KLQ5H9B9 411 aa12.86□□□□□ -0.35
CLCN6-202ENST00000346436 LARP1Q6PKG0 1096 aaKnown RBP12.86□□□□□ -0.35
CLCN6-202ENST00000346436 CCDC39Q9UFE4 941 aa12.86□□□□□ -0.35
CLCN6-202ENST00000346436 CEBPZQ03701 1054 aaKnown RBP12.86□□□□□ -0.35
CLCN6-202ENST00000346436 NBPF6Q5VWK0 638 aa12.86□□□□□ -0.35
CLCN6-202ENST00000346436 NBPF5PQ86XG9 351 aaPredicted RBP12.86□□□□□ -0.35
CLCN6-202ENST00000346436 NBPF4Q96M43 638 aa12.86□□□□□ -0.35
CLCN6-202ENST00000346436 FEZ1Q99689 392 aa12.86□□□□□ -0.35
CLCN6-202ENST00000346436 POLR3DP05423 398 aaPredicted RBP12.86□□□□□ -0.35
CLCN6-202ENST00000346436 PHACTR3Q96KR7 559 aa12.86□□□□□ -0.35
CLCN6-202ENST00000346436 GDPD2Q9HCC8 539 aa12.86□□□□□ -0.35
CLCN6-202ENST00000346436 CABP5Q9NP86 173 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms