RNA–Protein interactions for RNA: ENST00000344627.10

SGCA-202, Transcript of sarcoglycan alpha, humanhuman

TSL 1 (best) BASIC

Gene SGCA, Length 1,057 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCA-202ENST00000344627 MSL1Q68DK7 614 aa16.89■□□□□ 0.29
SGCA-202ENST00000344627 YBX3P16989 372 aaKnown RBP eCLIP16.88■□□□□ 0.29
SGCA-202ENST00000344627 NLGN1Q8N2Q7 840 aa16.88■□□□□ 0.29
SGCA-202ENST00000344627 ATG3Q9NT62 314 aa16.88■□□□□ 0.29
SGCA-202ENST00000344627 TAF1LQ8IZX4 1826 aa16.87■□□□□ 0.29
SGCA-202ENST00000344627 LINC00116Q8NCU8 138 aa16.87■□□□□ 0.29
SGCA-202ENST00000344627 ASAP1Q9ULH1 1129 aa16.87■□□□□ 0.29
SGCA-202ENST00000344627 RTCBQ9Y3I0 505 aaKnown RBP16.87■□□□□ 0.29
SGCA-202ENST00000344627 TOGARAM1Q9Y4F4 1720 aa16.87■□□□□ 0.29
SGCA-202ENST00000344627 GOLGB1Q14789 3259 aaKnown RBP16.86■□□□□ 0.29
SGCA-202ENST00000344627 SENP3-EIF4A1A0A087X0R7 540 aa16.86■□□□□ 0.29
SGCA-202ENST00000344627 GNPATO15228 680 aa16.86■□□□□ 0.29
SGCA-202ENST00000344627 PHF14O94880 888 aa16.86■□□□□ 0.29
SGCA-202ENST00000344627 CC2D1BQ5T0F9 858 aaKnown RBP16.86■□□□□ 0.29
SGCA-202ENST00000344627 TRAPPC3LQ5T215 181 aa16.86■□□□□ 0.29
SGCA-202ENST00000344627 TGFB2P61812 414 aa16.85■□□□□ 0.29
SGCA-202ENST00000344627 AMER1Q5JTC6 1135 aaPredicted RBP16.85■□□□□ 0.29
SGCA-202ENST00000344627 C1orf141Q5JVX7 400 aa16.85■□□□□ 0.29
SGCA-202ENST00000344627 ZNF831Q5JPB2 1677 aa16.85■□□□□ 0.29
SGCA-202ENST00000344627 SULT6B1Q6IMI4 303 aa16.84■□□□□ 0.29
SGCA-202ENST00000344627 ZNF530Q6P9A1 599 aaPredicted RBP16.84■□□□□ 0.29
SGCA-202ENST00000344627 CNTNAP4Q9C0A0 1308 aa16.84■□□□□ 0.29
SGCA-202ENST00000344627 KDRP35968 1356 aa16.83■□□□□ 0.28
SGCA-202ENST00000344627 CABP4P57796 275 aa16.83■□□□□ 0.28
SGCA-202ENST00000344627 ITPK1Q13572 414 aa16.83■□□□□ 0.28
SGCA-202ENST00000344627 AEBP1Q8IUX7 1158 aa16.83■□□□□ 0.28
SGCA-202ENST00000344627 MTHFSP49914 203 aa16.82■□□□□ 0.28
SGCA-202ENST00000344627 UBR3Q6ZT12 1888 aa16.82■□□□□ 0.28
SGCA-202ENST00000344627 RPS6KA4O75676 772 aa16.81■□□□□ 0.28
SGCA-202ENST00000344627 GPBP1L1Q9HC44 474 aaPredicted RBP16.81■□□□□ 0.28
SGCA-202ENST00000344627 IL13P35225 146 aa16.8■□□□□ 0.28
SGCA-202ENST00000344627 RFC4P35249 363 aa16.8■□□□□ 0.28
SGCA-202ENST00000344627 AMIGO3Q86WK7 504 aa16.8■□□□□ 0.28
SGCA-202ENST00000344627 RBM42Q9BTD8 480 aaKnown RBP16.8■□□□□ 0.28
SGCA-202ENST00000344627 CCDC87Q9NVE4 849 aa16.8■□□□□ 0.28
SGCA-202ENST00000344627 ADCY9O60503 1353 aa16.79■□□□□ 0.28
SGCA-202ENST00000344627 MMP10P09238 476 aa16.79■□□□□ 0.28
SGCA-202ENST00000344627 ATP10DQ9P241 1426 aa16.79■□□□□ 0.28
SGCA-202ENST00000344627 PER1O15534 1290 aaPredicted RBP16.78■□□□□ 0.28
SGCA-202ENST00000344627 SMIM5Q71RC9 77 aa16.78■□□□□ 0.28
SGCA-202ENST00000344627 HMOX1P09601 288 aa16.77■□□□□ 0.28
SGCA-202ENST00000344627 AKAP4Q5JQC9 854 aa16.77■□□□□ 0.28
SGCA-202ENST00000344627 ARHGEF1Q92888 912 aaKnown RBP16.77■□□□□ 0.28
SGCA-202ENST00000344627 PARP3Q9Y6F1 533 aa16.77■□□□□ 0.28
SGCA-202ENST00000344627 DIAPH1O60610 1272 aaKnown RBP16.76■□□□□ 0.27
SGCA-202ENST00000344627 KDM6AO15550 1401 aaPredicted RBP16.76■□□□□ 0.27
SGCA-202ENST00000344627 GYS1P13807 737 aa16.75■□□□□ 0.27
SGCA-202ENST00000344627 SLC4A9Q96Q91 983 aa16.75■□□□□ 0.27
SGCA-202ENST00000344627 C10orf71Q711Q0 1435 aa16.74■□□□□ 0.27
SGCA-202ENST00000344627 NFATC2IPQ8NCF5 419 aa16.74■□□□□ 0.27
SGCA-202ENST00000344627 CICQ96RK0 1608 aaPredicted RBP16.74■□□□□ 0.27
SGCA-202ENST00000344627 U2SURPO15042 1029 aaKnown RBP16.73■□□□□ 0.27
SGCA-202ENST00000344627 PTCD1O75127 700 aaKnown RBP16.73■□□□□ 0.27
SGCA-202ENST00000344627 PXDNLA1KZ92 1463 aa16.72■□□□□ 0.27
SGCA-202ENST00000344627 CRKLP46109 303 aaKnown RBP16.71■□□□□ 0.27
SGCA-202ENST00000344627 VSIG10Q8N0Z9 540 aa16.71■□□□□ 0.27
SGCA-202ENST00000344627 SLC52A2Q9HAB3 445 aa16.71■□□□□ 0.27
SGCA-202ENST00000344627 USP42Q9H9J4 1324 aaKnown RBP16.7■□□□□ 0.26
SGCA-202ENST00000344627 HSPA6P17066 643 aa16.7■□□□□ 0.26
SGCA-202ENST00000344627 PIM2Q9P1W9 311 aa16.7■□□□□ 0.26
SGCA-202ENST00000344627 BCS1LQ9Y276 419 aa16.7■□□□□ 0.26
SGCA-202ENST00000344627 KIF13BQ9NQT8 1826 aa16.7■□□□□ 0.26
SGCA-202ENST00000344627 NPC1L1Q9UHC9 1359 aa16.69■□□□□ 0.26
SGCA-202ENST00000344627 COL5A3P25940 1745 aaPredicted RBP16.69■□□□□ 0.26
SGCA-202ENST00000344627 ZPR1O75312 459 aa16.68■□□□□ 0.26
SGCA-202ENST00000344627 FCHSD2O94868 740 aa16.68■□□□□ 0.26
SGCA-202ENST00000344627 MTHFSDQ2M296 383 aaKnown RBP16.68■□□□□ 0.26
SGCA-202ENST00000344627 CFAP53Q96M91 514 aa16.68■□□□□ 0.26
SGCA-202ENST00000344627 LGR6Q9HBX8 967 aa16.68■□□□□ 0.26
SGCA-202ENST00000344627 SCN11AQ9UI33 1791 aa16.68■□□□□ 0.26
SGCA-202ENST00000344627 C4AP0C0L4 1744 aa16.67■□□□□ 0.26
SGCA-202ENST00000344627 A0A0G2JLW4 131 aa16.67■□□□□ 0.26
SGCA-202ENST00000344627 VIRMAQ69YN4 1812 aaKnown RBP16.66■□□□□ 0.26
SGCA-202ENST00000344627 RNMTO43148 476 aaKnown RBP16.66■□□□□ 0.26
SGCA-202ENST00000344627 DPEP1P16444 411 aa16.66■□□□□ 0.26
SGCA-202ENST00000344627 INTS5Q6P9B9 1019 aaKnown RBP16.66■□□□□ 0.26
SGCA-202ENST00000344627 ARHGAP27Q6ZUM4 889 aa16.66■□□□□ 0.26
SGCA-202ENST00000344627 MRC1P22897 1456 aa16.66■□□□□ 0.26
SGCA-202ENST00000344627 TOMM70O94826 608 aa16.65■□□□□ 0.26
SGCA-202ENST00000344627 TM4SF1P30408 202 aa16.65■□□□□ 0.26
SGCA-202ENST00000344627 DALRD3Q5D0E6 543 aaKnown RBP16.65■□□□□ 0.26
SGCA-202ENST00000344627 TEX13AQ9BXU3 409 aaPredicted RBP16.65■□□□□ 0.26
SGCA-202ENST00000344627 KIF3CO14782 793 aa16.64■□□□□ 0.25
SGCA-202ENST00000344627 STARD3NLO95772 234 aa16.64■□□□□ 0.25
SGCA-202ENST00000344627 SLC39A6Q13433 755 aa16.64■□□□□ 0.25
SGCA-202ENST00000344627 GAS2L2Q8NHY3 880 aa16.64■□□□□ 0.25
SGCA-202ENST00000344627 ZNF526Q8TF50 670 aaPredicted RBP16.64■□□□□ 0.25
SGCA-202ENST00000344627 NARFQ9UHQ1 456 aa16.64■□□□□ 0.25
SGCA-202ENST00000344627 WWC3Q9ULE0 1092 aa16.64■□□□□ 0.25
SGCA-202ENST00000344627 PDZRN3Q9UPQ7 1066 aa16.64■□□□□ 0.25
SGCA-202ENST00000344627 SOS1Q07889 1333 aaPredicted RBP16.64■□□□□ 0.25
SGCA-202ENST00000344627 A0A087WZG4 1122 aa16.63■□□□□ 0.25
SGCA-202ENST00000344627 CYP19A1P11511 503 aaPredicted RBP16.63■□□□□ 0.25
SGCA-202ENST00000344627 KCNA3P22001 575 aa16.63■□□□□ 0.25
SGCA-202ENST00000344627 FKBP8Q14318 412 aa16.63■□□□□ 0.25
SGCA-202ENST00000344627 NUDCQ9Y266 331 aa16.63■□□□□ 0.25
SGCA-202ENST00000344627 MYH14Q7Z406 1995 aaKnown RBP16.63■□□□□ 0.25
SGCA-202ENST00000344627 ZC3H4Q9UPT8 1303 aaKnown RBP16.63■□□□□ 0.25
SGCA-202ENST00000344627 POLRMTO00411 1230 aaKnown RBP16.62■□□□□ 0.25
SGCA-202ENST00000344627 APLP1P51693 650 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms