RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 HIP1O00291 1037 aa3.9□□□□□ -1.78
CSMD3-202ENST00000339701 DHX16O60231 1041 aaKnown RBP3.9□□□□□ -1.78
CSMD3-202ENST00000339701 XBP1P17861 261 aa3.9□□□□□ -1.78
CSMD3-202ENST00000339701 A0A087WZG4 1122 aa3.9□□□□□ -1.79
CSMD3-202ENST00000339701 CABP4P57796 275 aa3.9□□□□□ -1.79
CSMD3-202ENST00000339701 BICDL1Q6ZP65 573 aa3.9□□□□□ -1.79
CSMD3-202ENST00000339701 UTP3Q9NQZ2 479 aaKnown RBP eCLIP3.9□□□□□ -1.79
CSMD3-202ENST00000339701 CABP1Q9NZU7 370 aa3.9□□□□□ -1.79
CSMD3-202ENST00000339701 CHMP5Q9NZZ3 219 aa3.9□□□□□ -1.79
CSMD3-202ENST00000339701 GTF3C5Q9Y5Q8 519 aaPredicted RBP3.9□□□□□ -1.79
CSMD3-202ENST00000339701 PLEKHH1Q9ULM0 1364 aa3.9□□□□□ -1.79
CSMD3-202ENST00000339701 DRC7Q8IY82 874 aa3.9□□□□□ -1.79
CSMD3-202ENST00000339701 HOOK2Q96ED9 719 aa3.9□□□□□ -1.79
CSMD3-202ENST00000339701 ARID3AQ99856 593 aa3.9□□□□□ -1.79
CSMD3-202ENST00000339701 CEP170Q5SW79 1584 aa3.9□□□□□ -1.79
CSMD3-202ENST00000339701 NSD3Q9BZ95 1437 aa3.9□□□□□ -1.79
CSMD3-202ENST00000339701 MCM5P33992 734 aa3.9□□□□□ -1.79
CSMD3-202ENST00000339701 RBM25P49756 843 aaKnown RBP3.9□□□□□ -1.79
CSMD3-202ENST00000339701 NLRP6P59044 892 aa3.9□□□□□ -1.79
CSMD3-202ENST00000339701 TMEM106CQ9BVX2 250 aa3.9□□□□□ -1.79
CSMD3-202ENST00000339701 CLTCQ00610 1675 aaKnown RBP3.9□□□□□ -1.79
CSMD3-202ENST00000339701 GOLGA6L9A6NEM1 432 aa3.9□□□□□ -1.79
CSMD3-202ENST00000339701 ZKSCAN1P17029 563 aaPredicted RBP3.9□□□□□ -1.79
CSMD3-202ENST00000339701 AKAP17AQ02040 695 aaKnown RBP3.9□□□□□ -1.79
CSMD3-202ENST00000339701 EAPPQ56P03 285 aaPredicted RBP3.9□□□□□ -1.79
CSMD3-202ENST00000339701 GZF1Q9H116 711 aaPredicted RBP3.9□□□□□ -1.79
CSMD3-202ENST00000339701 BLMP54132 1417 aaPredicted RBP3.9□□□□□ -1.79
CSMD3-202ENST00000339701 ABCC3O15438 1527 aa3.89□□□□□ -1.79
CSMD3-202ENST00000339701 PYM1Q9BRP8 204 aaKnown RBP3.89□□□□□ -1.79
CSMD3-202ENST00000339701 RTN4Q9NQC3 1192 aaKnown RBP3.89□□□□□ -1.79
CSMD3-202ENST00000339701 SEC63Q9UGP8 760 aaKnown RBP3.89□□□□□ -1.79
CSMD3-202ENST00000339701 AXDND1Q5T1B0 1012 aaPredicted RBP3.89□□□□□ -1.79
CSMD3-202ENST00000339701 CERKQ8TCT0 537 aa3.89□□□□□ -1.79
CSMD3-202ENST00000339701 PTCH1Q13635 1447 aa3.89□□□□□ -1.79
CSMD3-202ENST00000339701 SLF2Q8IX21 1173 aa3.89□□□□□ -1.79
CSMD3-202ENST00000339701 SMARCC1Q92922 1105 aaPredicted RBP3.89□□□□□ -1.79
CSMD3-202ENST00000339701 FAM13BQ9NYF5 915 aa3.89□□□□□ -1.79
CSMD3-202ENST00000339701 DENND4BO75064 1496 aaPredicted RBP3.89□□□□□ -1.79
CSMD3-202ENST00000339701 NLRP1Q9C000 1473 aa3.89□□□□□ -1.79
CSMD3-202ENST00000339701 RBM26Q5T8P6 1007 aaKnown RBP3.89□□□□□ -1.79
CSMD3-202ENST00000339701 SOGA3Q5TF21 947 aa3.89□□□□□ -1.79
CSMD3-202ENST00000339701 N4BP2Q86UW6 1770 aaPredicted RBP3.89□□□□□ -1.79
CSMD3-202ENST00000339701 PLEKHO1Q53GL0 409 aaPredicted RBP3.89□□□□□ -1.79
CSMD3-202ENST00000339701 L3MBTL2Q969R5 705 aa3.89□□□□□ -1.79
CSMD3-202ENST00000339701 MLH3Q9UHC1 1453 aa3.89□□□□□ -1.79
CSMD3-202ENST00000339701 CENPQQ7L2Z9 268 aaPredicted RBP3.89□□□□□ -1.79
CSMD3-202ENST00000339701 DZIP1LQ8IYY4 767 aaKnown RBP3.89□□□□□ -1.79
CSMD3-202ENST00000339701 TMOD3Q9NYL9 352 aa3.89□□□□□ -1.79
CSMD3-202ENST00000339701 RTL1A6NKG5 1358 aa3.89□□□□□ -1.79
CSMD3-202ENST00000339701 MYO9BQ13459 2157 aa3.89□□□□□ -1.79
CSMD3-202ENST00000339701 CASTP20810 708 aaKnown RBP3.89□□□□□ -1.79
CSMD3-202ENST00000339701 SSR1P43307 286 aaKnown RBP3.89□□□□□ -1.79
CSMD3-202ENST00000339701 MAPK8IP2Q13387 824 aaPredicted RBP3.89□□□□□ -1.79
CSMD3-202ENST00000339701 LRSAM1Q6UWE0 723 aa3.89□□□□□ -1.79
CSMD3-202ENST00000339701 FAM114A1Q8IWE2 563 aa3.89□□□□□ -1.79
CSMD3-202ENST00000339701 CCDC87Q9NVE4 849 aa3.89□□□□□ -1.79
CSMD3-202ENST00000339701 ANKRD50Q9ULJ7 1429 aa3.89□□□□□ -1.79
CSMD3-202ENST00000339701 B4DLN1 442 aa3.89□□□□□ -1.79
CSMD3-202ENST00000339701 PRPF40AO75400 957 aaKnown RBP3.89□□□□□ -1.79
CSMD3-202ENST00000339701 RAPGEF3O95398 923 aa3.89□□□□□ -1.79
CSMD3-202ENST00000339701 MRPL12P52815 198 aaKnown RBP3.89□□□□□ -1.79
CSMD3-202ENST00000339701 NOL8Q76FK4 1167 aaKnown RBP3.89□□□□□ -1.79
CSMD3-202ENST00000339701 CDCA7Q9BWT1 371 aaPredicted RBP3.89□□□□□ -1.79
CSMD3-202ENST00000339701 ATP10BO94823 1461 aa3.89□□□□□ -1.79
CSMD3-202ENST00000339701 PREX1Q8TCU6 1659 aa3.89□□□□□ -1.79
CSMD3-202ENST00000339701 ARHGAP31Q2M1Z3 1444 aa3.89□□□□□ -1.79
CSMD3-202ENST00000339701 PIK3R4Q99570 1358 aa3.89□□□□□ -1.79
CSMD3-202ENST00000339701 VWDEQ8N2E2 1590 aa3.89□□□□□ -1.79
CSMD3-202ENST00000339701 FAM83GA6ND36 823 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 CCDC174Q6PII3 467 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 RASSF8Q8NHQ8 419 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 DACH1Q9UI36 760 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 NPATQ14207 1427 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 NCOA1Q15788 1441 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 ARHGAP27Q6ZUM4 889 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 NALCNQ8IZF0 1738 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 CIZ1Q9ULV3 898 aaPredicted RBP3.88□□□□□ -1.79
CSMD3-202ENST00000339701 DLC1Q96QB1 1528 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 DDB1Q16531 1140 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 MAP9Q49MG5 647 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 CFAP57Q96MR6 1250 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 SPC25Q9HBM1 224 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 USP54Q70EL1 1684 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 USP47Q96K76 1375 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 BECN2A8MW95 431 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 ARID4AP29374 1257 aaPredicted RBP3.88□□□□□ -1.79
CSMD3-202ENST00000339701 BRDTQ58F21 947 aaPredicted RBP3.88□□□□□ -1.79
CSMD3-202ENST00000339701 SPON1Q9HCB6 807 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 TOMM22Q9NS69 142 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 CCDC171Q6TFL3 1326 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 C9orf84Q5VXU9 1444 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 NEMFO60524 1076 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 GTF2F1P35269 517 aaKnown RBP eCLIP3.88□□□□□ -1.79
CSMD3-202ENST00000339701 CETN2P41208 172 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 NBPF11Q86T75 865 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 TTC12Q9H892 705 aaPredicted RBP3.88□□□□□ -1.79
CSMD3-202ENST00000339701 ANKIB1Q9P2G1 1089 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 A2ML1A8K2U0 1454 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 ERICH2A1L162 156 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 RRP9O43818 475 aaKnown RBP3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms