RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 TOM1L2Q6ZVM7 507 aa28.31■■■□□ 2.12
PDLIM2-203ENST00000339162 PHKG2P15735 406 aa28.3■■■□□ 2.12
PDLIM2-203ENST00000339162 FLIIQ13045 1269 aa28.3■■■□□ 2.12
PDLIM2-203ENST00000339162 VIRMAQ69YN4 1812 aaKnown RBP28.29■■■□□ 2.12
PDLIM2-203ENST00000339162 WDR17Q8IZU2 1322 aa28.29■■■□□ 2.12
PDLIM2-203ENST00000339162 FKBP5Q13451 457 aaPredicted RBP28.28■■■□□ 2.12
PDLIM2-203ENST00000339162 STRN4Q9NRL3 753 aa28.28■■■□□ 2.12
PDLIM2-203ENST00000339162 KDM3BQ7LBC6 1761 aa28.28■■■□□ 2.12
PDLIM2-203ENST00000339162 SIRT2Q8IXJ6 389 aa28.28■■■□□ 2.12
PDLIM2-203ENST00000339162 SOS1Q07889 1333 aaPredicted RBP28.27■■■□□ 2.12
PDLIM2-203ENST00000339162 CYP27B1O15528 508 aa28.27■■■□□ 2.12
PDLIM2-203ENST00000339162 C8orf34Q49A92 452 aa28.27■■■□□ 2.12
PDLIM2-203ENST00000339162 SMC5Q8IY18 1101 aa28.27■■■□□ 2.12
PDLIM2-203ENST00000339162 ABCA3Q99758 1704 aa28.26■■■□□ 2.12
PDLIM2-203ENST00000339162 IFNL2Q8IZJ0 200 aa28.26■■■□□ 2.11
PDLIM2-203ENST00000339162 PHAXQ9H814 394 aaKnown RBP28.26■■■□□ 2.11
PDLIM2-203ENST00000339162 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.26■■■□□ 2.11
PDLIM2-203ENST00000339162 KDM6AO15550 1401 aaPredicted RBP28.26■■■□□ 2.11
PDLIM2-203ENST00000339162 COL5A2P05997 1499 aaPredicted RBP28.26■■■□□ 2.11
PDLIM2-203ENST00000339162 FAM161AQ3B820 660 aa28.26■■■□□ 2.11
PDLIM2-203ENST00000339162 NPM2Q86SE8 214 aaKnown RBP28.26■■■□□ 2.11
PDLIM2-203ENST00000339162 OVOS2A0A0G2JMS6 1433 aa28.26■■■□□ 2.11
PDLIM2-203ENST00000339162 MEIS3Q99687 375 aa28.25■■■□□ 2.11
PDLIM2-203ENST00000339162 PRAMEF22A3QJZ6 481 aa28.24■■■□□ 2.11
PDLIM2-203ENST00000339162 SLC39A6Q13433 755 aa28.24■■■□□ 2.11
PDLIM2-203ENST00000339162 NFATC2IPQ8NCF5 419 aa28.24■■■□□ 2.11
PDLIM2-203ENST00000339162 LARP1Q6PKG0 1096 aaKnown RBP28.23■■■□□ 2.11
PDLIM2-203ENST00000339162 CHPF2Q9P2E5 772 aa28.23■■■□□ 2.11
PDLIM2-203ENST00000339162 ANXA1P04083 346 aa28.23■■■□□ 2.11
PDLIM2-203ENST00000339162 ROBO1Q9Y6N7 1651 aa28.23■■■□□ 2.11
PDLIM2-203ENST00000339162 EVA1CP58658 441 aa28.22■■■□□ 2.11
PDLIM2-203ENST00000339162 SLC52A2Q9HAB3 445 aa28.22■■■□□ 2.11
PDLIM2-203ENST00000339162 LTBP4Q8N2S1 1624 aa28.21■■■□□ 2.11
PDLIM2-203ENST00000339162 GIGYF1O75420 1035 aaPredicted RBP28.2■■■□□ 2.1
PDLIM2-203ENST00000339162 HOXB7P09629 217 aa28.2■■■□□ 2.1
PDLIM2-203ENST00000339162 USP35Q9P2H5 1018 aa28.2■■■□□ 2.1
PDLIM2-203ENST00000339162 ADAMTS7Q9UKP4 1686 aa28.2■■■□□ 2.1
PDLIM2-203ENST00000339162 CCT4P50991 539 aaKnown RBP28.19■■■□□ 2.1
PDLIM2-203ENST00000339162 MSH5O43196 834 aa28.18■■■□□ 2.1
PDLIM2-203ENST00000339162 SIPA1L3O60292 1781 aaPredicted RBP28.18■■■□□ 2.1
PDLIM2-203ENST00000339162 DCAF5Q96JK2 942 aa28.18■■■□□ 2.1
PDLIM2-203ENST00000339162 LNPKQ9C0E8 428 aa28.18■■■□□ 2.1
PDLIM2-203ENST00000339162 ZNF790Q6PG37 636 aa28.17■■■□□ 2.1
PDLIM2-203ENST00000339162 NUCB1Q02818 461 aa28.16■■■□□ 2.1
PDLIM2-203ENST00000339162 BTG4Q9NY30 223 aa28.16■■■□□ 2.1
PDLIM2-203ENST00000339162 SCN11AQ9UI33 1791 aa28.16■■■□□ 2.1
PDLIM2-203ENST00000339162 ANP32AP39687 249 aaKnown RBP28.16■■■□□ 2.1
PDLIM2-203ENST00000339162 CARD10Q9BWT7 1032 aa28.16■■■□□ 2.1
PDLIM2-203ENST00000339162 ANKRD45Q5TZF3 282 aa28.15■■■□□ 2.1
PDLIM2-203ENST00000339162 ZCRB1Q8TBF4 217 aaKnown RBP28.15■■■□□ 2.1
PDLIM2-203ENST00000339162 HEG1Q9ULI3 1381 aa28.15■■■□□ 2.1
PDLIM2-203ENST00000339162 PKD1L3Q7Z443 1732 aa28.15■■■□□ 2.1
PDLIM2-203ENST00000339162 ATP10DQ9P241 1426 aa28.14■■■□□ 2.1
PDLIM2-203ENST00000339162 IL2RBP14784 551 aa28.14■■■□□ 2.09
PDLIM2-203ENST00000339162 PROSER3Q2NL68 480 aa28.14■■■□□ 2.09
PDLIM2-203ENST00000339162 CEP85Q6P2H3 762 aa28.14■■■□□ 2.09
PDLIM2-203ENST00000339162 CHD1LQ86WJ1 897 aa28.14■■■□□ 2.09
PDLIM2-203ENST00000339162 GCC1Q96CN9 775 aa28.14■■■□□ 2.09
PDLIM2-203ENST00000339162 CACNA1FO60840 1977 aa28.13■■■□□ 2.09
PDLIM2-203ENST00000339162 ANKRD44Q8N8A2 993 aa28.12■■■□□ 2.09
PDLIM2-203ENST00000339162 DDX54Q8TDD1 881 aaKnown RBP28.12■■■□□ 2.09
PDLIM2-203ENST00000339162 CABP4P57796 275 aa28.11■■■□□ 2.09
PDLIM2-203ENST00000339162 BCL11AQ9H165 835 aa28.11■■■□□ 2.09
PDLIM2-203ENST00000339162 DBF4Q9UBU7 674 aaPredicted RBP28.11■■■□□ 2.09
PDLIM2-203ENST00000339162 HSP90AB1P08238 724 aaKnown RBP28.11■■■□□ 2.09
PDLIM2-203ENST00000339162 PLEKHG2Q9H7P9 1386 aa28.1■■■□□ 2.09
PDLIM2-203ENST00000339162 ZNF496Q96IT1 587 aaPredicted RBP28.1■■■□□ 2.09
PDLIM2-203ENST00000339162 PCDH11XQ9BZA7 1347 aa28.1■■■□□ 2.09
PDLIM2-203ENST00000339162 PCDH11YQ9BZA8 1340 aa28.1■■■□□ 2.09
PDLIM2-203ENST00000339162 PI4KAP2A4QPH2 592 aa28.1■■■□□ 2.09
PDLIM2-203ENST00000339162 RPAP2Q8IXW5 612 aaPredicted RBP28.1■■■□□ 2.09
PDLIM2-203ENST00000339162 PI4KAP1Q8N8J0 262 aa28.1■■■□□ 2.09
PDLIM2-203ENST00000339162 CHMP4AQ9BY43 222 aa28.1■■■□□ 2.09
PDLIM2-203ENST00000339162 PIP4K2BP78356 416 aa28.08■■■□□ 2.09
PDLIM2-203ENST00000339162 AHDC1Q5TGY3 1603 aaPredicted RBP28.08■■■□□ 2.09
PDLIM2-203ENST00000339162 PARP4Q9UKK3 1724 aaKnown RBP28.08■■■□□ 2.09
PDLIM2-203ENST00000339162 TTC5Q8N0Z6 440 aa28.07■■■□□ 2.08
PDLIM2-203ENST00000339162 DCTPP1Q9H773 170 aa28.07■■■□□ 2.08
PDLIM2-203ENST00000339162 SEC24BO95487 1268 aa28.06■■■□□ 2.08
PDLIM2-203ENST00000339162 GNAI2P04899 355 aa28.06■■■□□ 2.08
PDLIM2-203ENST00000339162 USP44Q9H0E7 712 aa28.05■■■□□ 2.08
PDLIM2-203ENST00000339162 MRC1P22897 1456 aa28.05■■■□□ 2.08
PDLIM2-203ENST00000339162 DNAAF4Q8WXU2 420 aa28.04■■■□□ 2.08
PDLIM2-203ENST00000339162 APBB1O00213 710 aa28.04■■■□□ 2.08
PDLIM2-203ENST00000339162 ADCY9O60503 1353 aa28.03■■■□□ 2.08
PDLIM2-203ENST00000339162 SRCIN1Q9C0H9 1055 aa28.03■■■□□ 2.08
PDLIM2-203ENST00000339162 ADAMTS2O95450 1211 aa28.03■■■□□ 2.08
PDLIM2-203ENST00000339162 GNAI3P08754 354 aa28.03■■■□□ 2.08
PDLIM2-203ENST00000339162 AIMP1Q12904 312 aaKnown RBP28.02■■■□□ 2.08
PDLIM2-203ENST00000339162 PDIA6Q15084 440 aa28.02■■■□□ 2.08
PDLIM2-203ENST00000339162 IPO9Q96P70 1041 aaKnown RBP28.02■■■□□ 2.08
PDLIM2-203ENST00000339162 USP16Q9Y5T5 823 aa28.02■■■□□ 2.08
PDLIM2-203ENST00000339162 PXDNLA1KZ92 1463 aa28.02■■■□□ 2.08
PDLIM2-203ENST00000339162 MYL6BP14649 208 aa28.01■■■□□ 2.07
PDLIM2-203ENST00000339162 BEND3Q5T5X7 828 aa28.01■■■□□ 2.07
PDLIM2-203ENST00000339162 LRRFIP2Q9Y608 721 aaKnown RBP28.01■■■□□ 2.07
PDLIM2-203ENST00000339162 PIP4K2AP48426 406 aaPredicted RBP28■■■□□ 2.07
PDLIM2-203ENST00000339162 DDX21Q9NR30 783 aaKnown RBP eCLIP28■■■□□ 2.07
PDLIM2-203ENST00000339162 MAP3K2Q9Y2U5 619 aa28■■■□□ 2.07
PDLIM2-203ENST00000339162 C5P01031 1676 aa28■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms