RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 NUTM2BA6NNL0 878 aaPredicted RBP5.32□□□□□ -1.56
MCF2-201ENST00000338585 NUTM2EB1AL46 878 aaPredicted RBP5.32□□□□□ -1.56
MCF2-201ENST00000338585 RNMTO43148 476 aaKnown RBP5.32□□□□□ -1.56
MCF2-201ENST00000338585 TRIM27P14373 513 aa5.32□□□□□ -1.56
MCF2-201ENST00000338585 EVA1CP58658 441 aa5.32□□□□□ -1.56
MCF2-201ENST00000338585 PDE3AQ14432 1141 aa5.32□□□□□ -1.56
MCF2-201ENST00000338585 TAF7Q15545 349 aaPredicted RBP5.32□□□□□ -1.56
MCF2-201ENST00000338585 ZKSCAN2Q63HK3 967 aa5.32□□□□□ -1.56
MCF2-201ENST00000338585 NUTM2AQ8IVF1 878 aaPredicted RBP5.32□□□□□ -1.56
MCF2-201ENST00000338585 MRPL50Q8N5N7 158 aaKnown RBP5.32□□□□□ -1.56
MCF2-201ENST00000338585 CYP27B1O15528 508 aa5.31□□□□□ -1.56
MCF2-201ENST00000338585 KCNQ3O43525 872 aa5.31□□□□□ -1.56
MCF2-201ENST00000338585 ALDH1L2Q3SY69 923 aa5.31□□□□□ -1.56
MCF2-201ENST00000338585 KDM6AO15550 1401 aaPredicted RBP5.31□□□□□ -1.56
MCF2-201ENST00000338585 PHKG2P15735 406 aa5.31□□□□□ -1.56
MCF2-201ENST00000338585 CERKQ8TCT0 537 aa5.31□□□□□ -1.56
MCF2-201ENST00000338585 CARD10Q9BWT7 1032 aa5.31□□□□□ -1.56
MCF2-201ENST00000338585 SPG7Q9UQ90 795 aa5.31□□□□□ -1.56
MCF2-201ENST00000338585 VIRMAQ69YN4 1812 aaKnown RBP5.31□□□□□ -1.56
MCF2-201ENST00000338585 OVOS2A0A0G2JMS6 1433 aa5.31□□□□□ -1.56
MCF2-201ENST00000338585 PKD1L3Q7Z443 1732 aa5.3□□□□□ -1.56
MCF2-201ENST00000338585 COL14A1Q05707 1796 aaKnown RBP5.3□□□□□ -1.56
MCF2-201ENST00000338585 TEFQ10587 303 aa5.3□□□□□ -1.56
MCF2-201ENST00000338585 ATF7IPQ6VMQ6 1270 aa5.3□□□□□ -1.56
MCF2-201ENST00000338585 DZIP1LQ8IYY4 767 aaKnown RBP5.3□□□□□ -1.56
MCF2-201ENST00000338585 NECTIN2Q92692 538 aa5.3□□□□□ -1.56
MCF2-201ENST00000338585 ZNF428Q96B54 188 aa5.3□□□□□ -1.56
MCF2-201ENST00000338585 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP5.3□□□□□ -1.56
MCF2-201ENST00000338585 KIF16BQ96L93 1317 aa5.3□□□□□ -1.56
MCF2-201ENST00000338585 IL2RBP14784 551 aa5.3□□□□□ -1.56
MCF2-201ENST00000338585 FTSJ3Q8IY81 847 aaKnown RBP5.3□□□□□ -1.56
MCF2-201ENST00000338585 ADAMTS7Q9UKP4 1686 aa5.3□□□□□ -1.56
MCF2-201ENST00000338585 BTBD11A6QL63 1104 aa5.29□□□□□ -1.56
MCF2-201ENST00000338585 BRPF1P55201 1214 aaPredicted RBP5.29□□□□□ -1.56
MCF2-201ENST00000338585 IFNL2Q8IZJ0 200 aa5.29□□□□□ -1.56
MCF2-201ENST00000338585 TMEM57Q8N5G2 664 aa5.29□□□□□ -1.56
MCF2-201ENST00000338585 KDM3BQ7LBC6 1761 aa5.29□□□□□ -1.56
MCF2-201ENST00000338585 PARP4Q9UKK3 1724 aaKnown RBP5.29□□□□□ -1.56
MCF2-201ENST00000338585 PLCH1Q4KWH8 1693 aa5.29□□□□□ -1.56
MCF2-201ENST00000338585 EIF4A1P60842 406 aaKnown RBP5.29□□□□□ -1.56
MCF2-201ENST00000338585 MVPQ14764 893 aaKnown RBP5.29□□□□□ -1.56
MCF2-201ENST00000338585 G2E3Q7L622 706 aa5.29□□□□□ -1.56
MCF2-201ENST00000338585 ZCRB1Q8TBF4 217 aaKnown RBP5.29□□□□□ -1.56
MCF2-201ENST00000338585 BABAM1Q9NWV8 329 aa5.29□□□□□ -1.56
MCF2-201ENST00000338585 SIPA1L3O60292 1781 aaPredicted RBP5.29□□□□□ -1.56
MCF2-201ENST00000338585 SCN11AQ9UI33 1791 aa5.29□□□□□ -1.56
MCF2-201ENST00000338585 IPO8O15397 1037 aaKnown RBP5.29□□□□□ -1.56
MCF2-201ENST00000338585 SLC39A6Q13433 755 aa5.29□□□□□ -1.56
MCF2-201ENST00000338585 SKAP1Q86WV1 359 aa5.29□□□□□ -1.56
MCF2-201ENST00000338585 ITPRIPQ8IWB1 547 aa5.29□□□□□ -1.56
MCF2-201ENST00000338585 NFATC2IPQ8NCF5 419 aa5.29□□□□□ -1.56
MCF2-201ENST00000338585 DDX54Q8TDD1 881 aaKnown RBP5.29□□□□□ -1.56
MCF2-201ENST00000338585 SLC52A2Q9HAB3 445 aa5.29□□□□□ -1.56
MCF2-201ENST00000338585 SHANK3Q9BYB0 1731 aa5.28□□□□□ -1.56
MCF2-201ENST00000338585 PCDH11XQ9BZA7 1347 aa5.28□□□□□ -1.56
MCF2-201ENST00000338585 PCDH11YQ9BZA8 1340 aa5.28□□□□□ -1.56
MCF2-201ENST00000338585 PRAMEF22A3QJZ6 481 aa5.28□□□□□ -1.56
MCF2-201ENST00000338585 SLC4A2P04920 1241 aa5.28□□□□□ -1.56
MCF2-201ENST00000338585 DCAF5Q96JK2 942 aa5.28□□□□□ -1.56
MCF2-201ENST00000338585 RGS12O14924 1447 aa5.28□□□□□ -1.56
MCF2-201ENST00000338585 PLEKHG2Q9H7P9 1386 aa5.28□□□□□ -1.56
MCF2-201ENST00000338585 ABCC4O15439 1325 aa5.28□□□□□ -1.56
MCF2-201ENST00000338585 EIF2S2P20042 333 aaKnown RBP5.28□□□□□ -1.56
MCF2-201ENST00000338585 HDGFL1Q5TGJ6 251 aa5.28□□□□□ -1.56
MCF2-201ENST00000338585 ARHGAP45Q92619 1136 aa5.28□□□□□ -1.56
MCF2-201ENST00000338585 PCDHB15Q9Y5E8 787 aa5.28□□□□□ -1.56
MCF2-201ENST00000338585 NRAPQ86VF7 1730 aa5.27□□□□□ -1.57
MCF2-201ENST00000338585 DISP2A7MBM2 1401 aa5.27□□□□□ -1.57
MCF2-201ENST00000338585 JCADQ9P266 1359 aa5.27□□□□□ -1.57
MCF2-201ENST00000338585 KDM2BQ8NHM5 1336 aa5.27□□□□□ -1.57
MCF2-201ENST00000338585 IGHDP01880 384 aa5.27□□□□□ -1.57
MCF2-201ENST00000338585 MS4A1P11836 297 aa5.27□□□□□ -1.57
MCF2-201ENST00000338585 MRC1P22897 1456 aa5.27□□□□□ -1.57
MCF2-201ENST00000338585 F6X3S4 739 aa5.27□□□□□ -1.57
MCF2-201ENST00000338585 ANXA1P04083 346 aa5.27□□□□□ -1.57
MCF2-201ENST00000338585 HSPA1LP34931 641 aa5.27□□□□□ -1.57
MCF2-201ENST00000338585 CABP4P57796 275 aa5.27□□□□□ -1.57
MCF2-201ENST00000338585 CCDC30Q5VVM6 783 aa5.27□□□□□ -1.57
MCF2-201ENST00000338585 ZNF790Q6PG37 636 aa5.27□□□□□ -1.57
MCF2-201ENST00000338585 C8orf37Q96NL8 207 aa5.27□□□□□ -1.57
MCF2-201ENST00000338585 STK31Q9BXU1 1019 aa5.27□□□□□ -1.57
MCF2-201ENST00000338585 API5Q9BZZ5 524 aaKnown RBP5.27□□□□□ -1.57
MCF2-201ENST00000338585 LRP6O75581 1613 aa5.27□□□□□ -1.57
MCF2-201ENST00000338585 HEG1Q9ULI3 1381 aa5.26□□□□□ -1.57
MCF2-201ENST00000338585 SLIT2O94813 1529 aa5.26□□□□□ -1.57
MCF2-201ENST00000338585 SPATA31A1Q5TZJ5 1347 aa5.26□□□□□ -1.57
MCF2-201ENST00000338585 GIGYF1O75420 1035 aaPredicted RBP5.26□□□□□ -1.57
MCF2-201ENST00000338585 HSP90AB1P08238 724 aaKnown RBP5.26□□□□□ -1.57
MCF2-201ENST00000338585 ZNF496Q96IT1 587 aaPredicted RBP5.26□□□□□ -1.57
MCF2-201ENST00000338585 PHAXQ9H814 394 aaKnown RBP5.26□□□□□ -1.57
MCF2-201ENST00000338585 CHPF2Q9P2E5 772 aa5.26□□□□□ -1.57
MCF2-201ENST00000338585 DDX19BQ9UMR2 479 aa5.26□□□□□ -1.57
MCF2-201ENST00000338585 FLIIQ13045 1269 aa5.26□□□□□ -1.57
MCF2-201ENST00000338585 POLA2Q14181 598 aa5.26□□□□□ -1.57
MCF2-201ENST00000338585 NKX1-1Q15270 411 aaPredicted RBP5.26□□□□□ -1.57
MCF2-201ENST00000338585 PELP1Q8IZL8 1130 aaKnown RBP5.26□□□□□ -1.57
MCF2-201ENST00000338585 NGLY1Q96IV0 654 aa5.26□□□□□ -1.57
MCF2-201ENST00000338585 ZBTB40Q9NUA8 1239 aa5.26□□□□□ -1.57
MCF2-201ENST00000338585 CCDC9Q9Y3X0 531 aaKnown RBP5.26□□□□□ -1.57
MCF2-201ENST00000338585 TOGARAM1Q9Y4F4 1720 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 112 ms