RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 SLC52A2Q9HAB3 445 aa19.19■□□□□ 0.66
CCDC88C-202ENST00000334448 SMC4Q9NTJ3 1288 aa19.18■□□□□ 0.66
CCDC88C-202ENST00000334448 ERVV-2B6SEH9 535 aa19.17■□□□□ 0.66
CCDC88C-202ENST00000334448 NGLY1Q96IV0 654 aa19.17■□□□□ 0.66
CCDC88C-202ENST00000334448 MIS18AQ9NYP9 233 aa19.17■□□□□ 0.66
CCDC88C-202ENST00000334448 VIRMAQ69YN4 1812 aaKnown RBP19.16■□□□□ 0.66
CCDC88C-202ENST00000334448 BTBD11A6QL63 1104 aa19.16■□□□□ 0.66
CCDC88C-202ENST00000334448 PLIN1O60240 522 aa19.16■□□□□ 0.66
CCDC88C-202ENST00000334448 EIF4A1P60842 406 aaKnown RBP19.16■□□□□ 0.66
CCDC88C-202ENST00000334448 MRPL50Q8N5N7 158 aaKnown RBP19.16■□□□□ 0.66
CCDC88C-202ENST00000334448 ARHGAP45Q92619 1136 aa19.16■□□□□ 0.66
CCDC88C-202ENST00000334448 C8orf37Q96NL8 207 aa19.16■□□□□ 0.66
CCDC88C-202ENST00000334448 CHMP4AQ9BY43 222 aa19.16■□□□□ 0.66
CCDC88C-202ENST00000334448 MS4A1P11836 297 aa19.15■□□□□ 0.66
CCDC88C-202ENST00000334448 IRX6P78412 446 aaPredicted RBP19.15■□□□□ 0.66
CCDC88C-202ENST00000334448 KRT24Q2M2I5 525 aa19.14■□□□□ 0.65
CCDC88C-202ENST00000334448 ZKSCAN2Q63HK3 967 aa19.14■□□□□ 0.65
CCDC88C-202ENST00000334448 USP35Q9P2H5 1018 aa19.14■□□□□ 0.65
CCDC88C-202ENST00000334448 IPO8O15397 1037 aaKnown RBP19.13■□□□□ 0.65
CCDC88C-202ENST00000334448 BCL2L13Q9BXK5 485 aa19.13■□□□□ 0.65
CCDC88C-202ENST00000334448 PPP4R2Q9NY27 417 aa19.13■□□□□ 0.65
CCDC88C-202ENST00000334448 PAPPAQ13219 1627 aa19.12■□□□□ 0.65
CCDC88C-202ENST00000334448 ATRNO75882 1429 aa19.12■□□□□ 0.65
CCDC88C-202ENST00000334448 EXOC5O00471 708 aa19.12■□□□□ 0.65
CCDC88C-202ENST00000334448 C20orf194Q5TEA3 1177 aa19.12■□□□□ 0.65
CCDC88C-202ENST00000334448 TOGARAM1Q9Y4F4 1720 aa19.11■□□□□ 0.65
CCDC88C-202ENST00000334448 ELL2O00472 640 aaPredicted RBP19.11■□□□□ 0.65
CCDC88C-202ENST00000334448 ZNF790Q6PG37 636 aa19.11■□□□□ 0.65
CCDC88C-202ENST00000334448 ATF7IPQ6VMQ6 1270 aa19.11■□□□□ 0.65
CCDC88C-202ENST00000334448 USP21Q9UK80 565 aa19.11■□□□□ 0.65
CCDC88C-202ENST00000334448 THSD7AQ9UPZ6 1657 aa19.11■□□□□ 0.65
CCDC88C-202ENST00000334448 CANXP27824 592 aaKnown RBP19.1■□□□□ 0.65
CCDC88C-202ENST00000334448 AAMPQ13685 434 aa19.1■□□□□ 0.65
CCDC88C-202ENST00000334448 NFATC2IPQ8NCF5 419 aa19.1■□□□□ 0.65
CCDC88C-202ENST00000334448 GLI3P10071 1580 aa19.1■□□□□ 0.65
CCDC88C-202ENST00000334448 TRIM27P14373 513 aa19.09■□□□□ 0.65
CCDC88C-202ENST00000334448 CABP4P57796 275 aa19.09■□□□□ 0.65
CCDC88C-202ENST00000334448 CCDC30Q5VVM6 783 aa19.09■□□□□ 0.65
CCDC88C-202ENST00000334448 DDX54Q8TDD1 881 aaKnown RBP19.09■□□□□ 0.65
CCDC88C-202ENST00000334448 FRAT1Q92837 279 aaPredicted RBP19.09■□□□□ 0.65
CCDC88C-202ENST00000334448 CRBNQ96SW2 442 aa19.09■□□□□ 0.65
CCDC88C-202ENST00000334448 NOB1Q9ULX3 412 aaKnown RBP19.09■□□□□ 0.65
CCDC88C-202ENST00000334448 PTPRCP08575 1304 aa19.08■□□□□ 0.65
CCDC88C-202ENST00000334448 KCNQ3O43525 872 aa19.08■□□□□ 0.64
CCDC88C-202ENST00000334448 DDB1Q16531 1140 aa19.08■□□□□ 0.64
CCDC88C-202ENST00000334448 MEX3CQ5U5Q3 659 aaKnown RBP19.08■□□□□ 0.64
CCDC88C-202ENST00000334448 EXOC6Q8TAG9 804 aa19.08■□□□□ 0.64
CCDC88C-202ENST00000334448 AFF2P51816 1311 aa19.07■□□□□ 0.64
CCDC88C-202ENST00000334448 GIGYF1O75420 1035 aaPredicted RBP19.07■□□□□ 0.64
CCDC88C-202ENST00000334448 DZIP1LQ8IYY4 767 aaKnown RBP19.07■□□□□ 0.64
CCDC88C-202ENST00000334448 API5Q9BZZ5 524 aaKnown RBP19.07■□□□□ 0.64
CCDC88C-202ENST00000334448 RGS12O14924 1447 aa19.07■□□□□ 0.64
CCDC88C-202ENST00000334448 UBR2Q8IWV8 1755 aa19.06■□□□□ 0.64
CCDC88C-202ENST00000334448 ABCC4O15439 1325 aa19.06■□□□□ 0.64
CCDC88C-202ENST00000334448 KCPQ6ZWJ8 1503 aa19.05■□□□□ 0.64
CCDC88C-202ENST00000334448 ONECUT3O60422 494 aaPredicted RBP19.05■□□□□ 0.64
CCDC88C-202ENST00000334448 RLBP1P12271 317 aa19.05■□□□□ 0.64
CCDC88C-202ENST00000334448 HDGFL1Q5TGJ6 251 aa19.05■□□□□ 0.64
CCDC88C-202ENST00000334448 STK31Q9BXU1 1019 aa19.05■□□□□ 0.64
CCDC88C-202ENST00000334448 TRPC5Q9UL62 973 aaPredicted RBP19.05■□□□□ 0.64
CCDC88C-202ENST00000334448 CCDC9Q9Y3X0 531 aaKnown RBP19.05■□□□□ 0.64
CCDC88C-202ENST00000334448 BCL9O00512 1426 aa19.05■□□□□ 0.64
CCDC88C-202ENST00000334448 PANK1Q8TE04 598 aa19.04■□□□□ 0.64
CCDC88C-202ENST00000334448 FMNL2Q96PY5 1086 aa19.04■□□□□ 0.64
CCDC88C-202ENST00000334448 MVPQ14764 893 aaKnown RBP19.03■□□□□ 0.64
CCDC88C-202ENST00000334448 FTSJ3Q8IY81 847 aaKnown RBP19.03■□□□□ 0.64
CCDC88C-202ENST00000334448 TTC5Q8N0Z6 440 aa19.03■□□□□ 0.64
CCDC88C-202ENST00000334448 ZNF496Q96IT1 587 aaPredicted RBP19.03■□□□□ 0.64
CCDC88C-202ENST00000334448 GJD4Q96KN9 370 aaPredicted RBP19.03■□□□□ 0.64
CCDC88C-202ENST00000334448 SLC4A2P04920 1241 aa19.02■□□□□ 0.64
CCDC88C-202ENST00000334448 SLC39A6Q13433 755 aa19.02■□□□□ 0.64
CCDC88C-202ENST00000334448 MARCH10Q8NA82 808 aaPredicted RBP19.02■□□□□ 0.64
CCDC88C-202ENST00000334448 TMOD3Q9NYL9 352 aa19.02■□□□□ 0.64
CCDC88C-202ENST00000334448 TNNQ9UQP3 1299 aa19.02■□□□□ 0.64
CCDC88C-202ENST00000334448 CACNA1FO60840 1977 aa19.01■□□□□ 0.63
CCDC88C-202ENST00000334448 SNRPA1P09661 255 aaKnown RBP19.01■□□□□ 0.63
CCDC88C-202ENST00000334448 FAM98CQ17RN3 349 aaKnown RBP19.01■□□□□ 0.63
CCDC88C-202ENST00000334448 ERBB4Q15303 1308 aa19■□□□□ 0.63
CCDC88C-202ENST00000334448 FBXO41Q8TF61 875 aa19■□□□□ 0.63
CCDC88C-202ENST00000334448 PIGBQ92521 554 aa19■□□□□ 0.63
CCDC88C-202ENST00000334448 DDX19BQ9UMR2 479 aa19■□□□□ 0.63
CCDC88C-202ENST00000334448 COG6Q9Y2V7 657 aa19■□□□□ 0.63
CCDC88C-202ENST00000334448 PXDNLA1KZ92 1463 aa19■□□□□ 0.63
CCDC88C-202ENST00000334448 LAMB4A4D0S4 1761 aa18.99■□□□□ 0.63
CCDC88C-202ENST00000334448 TCERG1O14776 1098 aaKnown RBP18.99■□□□□ 0.63
CCDC88C-202ENST00000334448 VSIG10Q8N0Z9 540 aa18.99■□□□□ 0.63
CCDC88C-202ENST00000334448 DBF4Q9UBU7 674 aaPredicted RBP18.99■□□□□ 0.63
CCDC88C-202ENST00000334448 DOT1LQ8TEK3 1739 aa18.99■□□□□ 0.63
CCDC88C-202ENST00000334448 C5P01031 1676 aa18.98■□□□□ 0.63
CCDC88C-202ENST00000334448 FLIIQ13045 1269 aa18.98■□□□□ 0.63
CCDC88C-202ENST00000334448 INTS3Q68E01 1043 aaKnown RBP18.98■□□□□ 0.63
CCDC88C-202ENST00000334448 CLUAP1Q96AJ1 413 aa18.98■□□□□ 0.63
CCDC88C-202ENST00000334448 G2E3Q7L622 706 aa18.97■□□□□ 0.63
CCDC88C-202ENST00000334448 TMEM57Q8N5G2 664 aa18.97■□□□□ 0.63
CCDC88C-202ENST00000334448 CHMP4BQ9H444 224 aaKnown RBP18.97■□□□□ 0.63
CCDC88C-202ENST00000334448 DDX21Q9NR30 783 aaKnown RBP eCLIP18.97■□□□□ 0.63
CCDC88C-202ENST00000334448 ITGB4P16144 1822 aa18.97■□□□□ 0.63
CCDC88C-202ENST00000334448 ATG3Q9NT62 314 aa18.96■□□□□ 0.63
CCDC88C-202ENST00000334448 CHPF2Q9P2E5 772 aa18.96■□□□□ 0.63
CCDC88C-202ENST00000334448 CICQ96RK0 1608 aaPredicted RBP18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms