RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 ATXN8OSP0DMR3 200 aa2.71□□□□□ -1.98
LINC00643-201ENST00000334389 PROSER2Q86WR7 435 aaPredicted RBP2.71□□□□□ -1.98
LINC00643-201ENST00000334389 CEBPAP49715 358 aaPredicted RBP2.7□□□□□ -1.98
LINC00643-201ENST00000334389 PROM2Q8N271 834 aa2.7□□□□□ -1.98
LINC00643-201ENST00000334389 TESPA1A2RU30 521 aaPredicted RBP2.7□□□□□ -1.98
LINC00643-201ENST00000334389 CFDP1Q9UEE9 299 aaPredicted RBP2.7□□□□□ -1.98
LINC00643-201ENST00000334389 CCDC88AQ3V6T2 1871 aa2.7□□□□□ -1.98
LINC00643-201ENST00000334389 ERBB4Q15303 1308 aa2.7□□□□□ -1.98
LINC00643-201ENST00000334389 HOXB1P14653 301 aaPredicted RBP2.7□□□□□ -1.98
LINC00643-201ENST00000334389 PGAP2Q9UHJ9 254 aa2.7□□□□□ -1.98
LINC00643-201ENST00000334389 TAF1P21675 1872 aa2.69□□□□□ -1.98
LINC00643-201ENST00000334389 CTCFP49711 727 aaPredicted RBP2.69□□□□□ -1.98
LINC00643-201ENST00000334389 ZNF687Q8N1G0 1237 aa2.69□□□□□ -1.98
LINC00643-201ENST00000334389 ZSWIM6Q9HCJ5 1215 aa2.69□□□□□ -1.98
LINC00643-201ENST00000334389 SLC24A1O60721 1099 aa2.69□□□□□ -1.98
LINC00643-201ENST00000334389 FAM205AQ6ZU69 1335 aa2.69□□□□□ -1.98
LINC00643-201ENST00000334389 KMT2EQ8IZD2 1858 aa2.69□□□□□ -1.98
LINC00643-201ENST00000334389 RC3H1Q5TC82 1133 aaKnown RBP2.68□□□□□ -1.98
LINC00643-201ENST00000334389 SMC1BQ8NDV3 1235 aa2.68□□□□□ -1.98
LINC00643-201ENST00000334389 MGAMO43451 1857 aa2.68□□□□□ -1.98
LINC00643-201ENST00000334389 ZCCHC17Q9NP64 241 aaKnown RBP2.68□□□□□ -1.98
LINC00643-201ENST00000334389 VGFO15240 615 aaPredicted RBP2.68□□□□□ -1.98
LINC00643-201ENST00000334389 IDI1Q13907 227 aa2.68□□□□□ -1.98
LINC00643-201ENST00000334389 NKX1-1Q15270 411 aaPredicted RBP2.68□□□□□ -1.98
LINC00643-201ENST00000334389 SEPT12Q8IYM1 358 aa2.68□□□□□ -1.98
LINC00643-201ENST00000334389 KCNA4P22459 653 aa2.67□□□□□ -1.98
LINC00643-201ENST00000334389 MAP2K2P36507 400 aa2.67□□□□□ -1.98
LINC00643-201ENST00000334389 MEX3CQ5U5Q3 659 aaKnown RBP2.67□□□□□ -1.98
LINC00643-201ENST00000334389 KCNH8Q96L42 1107 aa2.67□□□□□ -1.98
LINC00643-201ENST00000334389 PLCG2P16885 1265 aa2.67□□□□□ -1.98
LINC00643-201ENST00000334389 DCAF5Q96JK2 942 aa2.67□□□□□ -1.98
LINC00643-201ENST00000334389 CARD10Q9BWT7 1032 aa2.67□□□□□ -1.98
LINC00643-201ENST00000334389 PHIPQ8WWQ0 1821 aa2.67□□□□□ -1.98
LINC00643-201ENST00000334389 SUGP2Q8IX01 1082 aaKnown RBP eCLIP2.66□□□□□ -1.98
LINC00643-201ENST00000334389 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP2.66□□□□□ -1.98
LINC00643-201ENST00000334389 COLQQ9Y215 455 aaPredicted RBP2.66□□□□□ -1.98
LINC00643-201ENST00000334389 CNTNAP4Q9C0A0 1308 aa2.66□□□□□ -1.98
LINC00643-201ENST00000334389 A0A1W2PP64 1363 aa2.66□□□□□ -1.98
LINC00643-201ENST00000334389 CEMIPQ8WUJ3 1361 aa2.66□□□□□ -1.98
LINC00643-201ENST00000334389 A0A0G2JS52 829 aa2.66□□□□□ -1.98
LINC00643-201ENST00000334389 SLC15A2Q16348 729 aa2.66□□□□□ -1.98
LINC00643-201ENST00000334389 PBX2P40425 430 aa2.66□□□□□ -1.98
LINC00643-201ENST00000334389 C14orf93Q9H972 538 aaKnown RBP2.66□□□□□ -1.98
LINC00643-201ENST00000334389 KDM2BQ8NHM5 1336 aa2.66□□□□□ -1.98
LINC00643-201ENST00000334389 FAM205CA6NFA0 338 aa2.65□□□□□ -1.98
LINC00643-201ENST00000334389 TSPY4P0CV99 314 aa2.65□□□□□ -1.98
LINC00643-201ENST00000334389 TSPY10P0CW01 314 aa2.65□□□□□ -1.98
LINC00643-201ENST00000334389 SOGA3Q5TF21 947 aa2.65□□□□□ -1.98
LINC00643-201ENST00000334389 INTS3Q68E01 1043 aaKnown RBP2.65□□□□□ -1.98
LINC00643-201ENST00000334389 WBP1LQ9NX94 342 aa2.65□□□□□ -1.98
LINC00643-201ENST00000334389 RNF123Q5XPI4 1314 aa2.65□□□□□ -1.98
LINC00643-201ENST00000334389 WDR17Q8IZU2 1322 aa2.65□□□□□ -1.98
LINC00643-201ENST00000334389 SSFA2P28290 1259 aa2.65□□□□□ -1.99
LINC00643-201ENST00000334389 BRPF1P55201 1214 aaPredicted RBP2.65□□□□□ -1.99
LINC00643-201ENST00000334389 AMOTL2Q9Y2J4 779 aa2.65□□□□□ -1.99
LINC00643-201ENST00000334389 SH3TC1Q8TE82 1336 aa2.64□□□□□ -1.99
LINC00643-201ENST00000334389 RALGAPA2Q2PPJ7 1873 aa2.64□□□□□ -1.99
LINC00643-201ENST00000334389 ALPK3Q96L96 1907 aa2.64□□□□□ -1.99
LINC00643-201ENST00000334389 IRX5P78411 483 aaPredicted RBP2.64□□□□□ -1.99
LINC00643-201ENST00000334389 MAP2K1Q02750 393 aaPredicted RBP2.64□□□□□ -1.99
LINC00643-201ENST00000334389 KIF12Q96FN5 646 aa2.64□□□□□ -1.99
LINC00643-201ENST00000334389 COL4A4P53420 1690 aaPredicted RBP2.64□□□□□ -1.99
LINC00643-201ENST00000334389 PRMT2P55345 433 aa2.64□□□□□ -1.99
LINC00643-201ENST00000334389 ANKRD13DQ6ZTN6 518 aa2.64□□□□□ -1.99
LINC00643-201ENST00000334389 TCP11L2Q8N4U5 519 aa2.64□□□□□ -1.99
LINC00643-201ENST00000334389 MARVELD3Q96A59 401 aa2.64□□□□□ -1.99
LINC00643-201ENST00000334389 SYT17Q9BSW7 474 aa2.64□□□□□ -1.99
LINC00643-201ENST00000334389 COL4A5P29400 1685 aa2.64□□□□□ -1.99
LINC00643-201ENST00000334389 ROBO3Q96MS0 1386 aa2.64□□□□□ -1.99
LINC00643-201ENST00000334389 KIF3BO15066 747 aa2.63□□□□□ -1.99
LINC00643-201ENST00000334389 GNRH1P01148 92 aa2.63□□□□□ -1.99
LINC00643-201ENST00000334389 HSPA8P11142 646 aaKnown RBP2.63□□□□□ -1.99
LINC00643-201ENST00000334389 STK32BQ9NY57 414 aa2.63□□□□□ -1.99
LINC00643-201ENST00000334389 NPC1L1Q9UHC9 1359 aa2.63□□□□□ -1.99
LINC00643-201ENST00000334389 CFAP65Q6ZU64 1925 aaKnown RBP2.63□□□□□ -1.99
LINC00643-201ENST00000334389 CACNA1FO60840 1977 aa2.63□□□□□ -1.99
LINC00643-201ENST00000334389 SENP3-EIF4A1A0A087X0R7 540 aa2.63□□□□□ -1.99
LINC00643-201ENST00000334389 PLA2G5P39877 138 aa2.63□□□□□ -1.99
LINC00643-201ENST00000334389 MLLT1Q03111 559 aaPredicted RBP2.63□□□□□ -1.99
LINC00643-201ENST00000334389 FBXO31Q5XUX0 539 aaPredicted RBP2.63□□□□□ -1.99
LINC00643-201ENST00000334389 OTOFQ9HC10 1997 aa2.63□□□□□ -1.99
LINC00643-201ENST00000334389 CACNA1GO43497 2377 aa2.63□□□□□ -1.99
LINC00643-201ENST00000334389 KLRG2A4D1S0 409 aaPredicted RBP2.63□□□□□ -1.99
LINC00643-201ENST00000334389 TTLL13PA6NNM8 815 aa2.63□□□□□ -1.99
LINC00643-201ENST00000334389 KIF7Q2M1P5 1343 aa2.62□□□□□ -1.99
LINC00643-201ENST00000334389 HMCN1Q96RW7 5635 aa2.62□□□□□ -1.99
LINC00643-201ENST00000334389 IGSF3O75054 1194 aa2.62□□□□□ -1.99
LINC00643-201ENST00000334389 FKBP1BP68106 108 aa2.62□□□□□ -1.99
LINC00643-201ENST00000334389 FOCADQ5VW36 1801 aa2.62□□□□□ -1.99
LINC00643-201ENST00000334389 HNRNPMP52272 730 aaKnown RBP eCLIP2.62□□□□□ -1.99
LINC00643-201ENST00000334389 DOK7Q18PE1 504 aa2.62□□□□□ -1.99
LINC00643-201ENST00000334389 TAOK2Q9UL54 1235 aa2.62□□□□□ -1.99
LINC00643-201ENST00000334389 PNPLA7Q6ZV29 1317 aa2.61□□□□□ -1.99
LINC00643-201ENST00000334389 KCNH5Q8NCM2 988 aa2.61□□□□□ -1.99
LINC00643-201ENST00000334389 OCEL1Q9H607 264 aa2.61□□□□□ -1.99
LINC00643-201ENST00000334389 POU3F3P20264 500 aaPredicted RBP2.61□□□□□ -1.99
LINC00643-201ENST00000334389 KIAA1671Q9BY89 1806 aa2.61□□□□□ -1.99
LINC00643-201ENST00000334389 TNS4Q8IZW8 715 aa2.61□□□□□ -1.99
LINC00643-201ENST00000334389 KRTAP4-8Q9BYQ9 185 aa2.61□□□□□ -1.99
LINC00643-201ENST00000334389 FANCIQ9NVI1 1328 aa2.6□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms