RNA–Protein interactions for RNA: ENST00000334060.8

SHOX-201, Transcript of short stature homeobox, humanhuman

TSL 5 BASIC

Gene SHOX, Length 1,951 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-201ENST00000334060 ZNF853P0CG23 659 aa21.59■■□□□ 1.05
SHOX-201ENST00000334060 GOLGA2Q08379 1002 aa21.59■■□□□ 1.05
SHOX-201ENST00000334060 SLFN5Q08AF3 891 aa21.59■■□□□ 1.05
SHOX-201ENST00000334060 PIGBQ92521 554 aa21.59■■□□□ 1.05
SHOX-201ENST00000334060 FANCIQ9NVI1 1328 aa21.59■■□□□ 1.05
SHOX-201ENST00000334060 HTATSF1O43719 755 aaKnown RBP21.58■■□□□ 1.05
SHOX-201ENST00000334060 LMOD3Q0VAK6 560 aa21.57■■□□□ 1.04
SHOX-201ENST00000334060 DUSP27Q5VZP5 1158 aa21.57■■□□□ 1.04
SHOX-201ENST00000334060 GTF3C3Q9Y5Q9 886 aa21.57■■□□□ 1.04
SHOX-201ENST00000334060 PRAMEF22A3QJZ6 481 aa21.57■■□□□ 1.04
SHOX-201ENST00000334060 CABP4P57796 275 aa21.57■■□□□ 1.04
SHOX-201ENST00000334060 TEFQ10587 303 aa21.57■■□□□ 1.04
SHOX-201ENST00000334060 WDR63Q8IWG1 891 aa21.57■■□□□ 1.04
SHOX-201ENST00000334060 ASAP1Q9ULH1 1129 aa21.57■■□□□ 1.04
SHOX-201ENST00000334060 CHL1O00533 1208 aa21.56■■□□□ 1.04
SHOX-201ENST00000334060 TSPYL6Q8N831 410 aa21.56■■□□□ 1.04
SHOX-201ENST00000334060 ELL2O00472 640 aaPredicted RBP21.55■■□□□ 1.04
SHOX-201ENST00000334060 TRMT2AQ8IZ69 625 aaKnown RBP21.55■■□□□ 1.04
SHOX-201ENST00000334060 BTBD11A6QL63 1104 aa21.54■■□□□ 1.04
SHOX-201ENST00000334060 TAF7Q15545 349 aaPredicted RBP21.54■■□□□ 1.04
SHOX-201ENST00000334060 CFAP44Q96MT7 982 aa21.54■■□□□ 1.04
SHOX-201ENST00000334060 TSPYL4Q9UJ04 414 aa21.54■■□□□ 1.04
SHOX-201ENST00000334060 SBF2Q86WG5 1849 aa21.54■■□□□ 1.04
SHOX-201ENST00000334060 BCL9O00512 1426 aa21.54■■□□□ 1.04
SHOX-201ENST00000334060 HSP90AB1P08238 724 aaKnown RBP21.54■■□□□ 1.04
SHOX-201ENST00000334060 NCBP3Q53F19 620 aaKnown RBP21.54■■□□□ 1.04
SHOX-201ENST00000334060 KDM3BQ7LBC6 1761 aa21.53■■□□□ 1.04
SHOX-201ENST00000334060 KCNQ4P56696 695 aa21.53■■□□□ 1.04
SHOX-201ENST00000334060 C8orf58Q8NAV2 365 aa21.53■■□□□ 1.04
SHOX-201ENST00000334060 IFT57Q9NWB7 429 aa21.53■■□□□ 1.04
SHOX-201ENST00000334060 TRIM37O94972 964 aa21.52■■□□□ 1.04
SHOX-201ENST00000334060 EXOSC9Q06265 439 aaKnown RBP21.52■■□□□ 1.04
SHOX-201ENST00000334060 TMOD3Q9NYL9 352 aa21.52■■□□□ 1.04
SHOX-201ENST00000334060 ERVV-2B6SEH9 535 aa21.52■■□□□ 1.04
SHOX-201ENST00000334060 ATG3Q9NT62 314 aa21.51■■□□□ 1.03
SHOX-201ENST00000334060 NGEFQ8N5V2 710 aa21.5■■□□□ 1.03
SHOX-201ENST00000334060 PAPPAQ13219 1627 aa21.5■■□□□ 1.03
SHOX-201ENST00000334060 IL16Q14005 1332 aa21.5■■□□□ 1.03
SHOX-201ENST00000334060 E9PSI1 815 aa21.5■■□□□ 1.03
SHOX-201ENST00000334060 TCERG1O14776 1098 aaKnown RBP21.5■■□□□ 1.03
SHOX-201ENST00000334060 PTCD1O75127 700 aaKnown RBP21.5■■□□□ 1.03
SHOX-201ENST00000334060 ZNF496Q96IT1 587 aaPredicted RBP21.5■■□□□ 1.03
SHOX-201ENST00000334060 SLC4A9Q96Q91 983 aa21.5■■□□□ 1.03
SHOX-201ENST00000334060 NHSQ6T4R5 1651 aa21.49■■□□□ 1.03
SHOX-201ENST00000334060 GNAI1P63096 354 aa21.49■■□□□ 1.03
SHOX-201ENST00000334060 ZNF790Q6PG37 636 aa21.49■■□□□ 1.03
SHOX-201ENST00000334060 KCPQ6ZWJ8 1503 aa21.49■■□□□ 1.03
SHOX-201ENST00000334060 BTAF1O14981 1849 aa21.49■■□□□ 1.03
SHOX-201ENST00000334060 EIF4A1P60842 406 aaKnown RBP21.48■■□□□ 1.03
SHOX-201ENST00000334060 NECTIN2Q92692 538 aa21.47■■□□□ 1.03
SHOX-201ENST00000334060 C5P01031 1676 aa21.46■■□□□ 1.03
SHOX-201ENST00000334060 ILDR2Q71H61 639 aa21.46■■□□□ 1.03
SHOX-201ENST00000334060 FAM196AQ6ZSG2 479 aa21.45■■□□□ 1.02
SHOX-201ENST00000334060 UBR2Q8IWV8 1755 aa21.45■■□□□ 1.02
SHOX-201ENST00000334060 PIP4K2AP48426 406 aaPredicted RBP21.45■■□□□ 1.02
SHOX-201ENST00000334060 BCL2L13Q9BXK5 485 aa21.44■■□□□ 1.02
SHOX-201ENST00000334060 MYH16Q9H6N6 1097 aa21.44■■□□□ 1.02
SHOX-201ENST00000334060 CALD1Q05682 793 aaKnown RBP21.43■■□□□ 1.02
SHOX-201ENST00000334060 RBM42Q9BTD8 480 aaKnown RBP21.43■■□□□ 1.02
SHOX-201ENST00000334060 PALLDQ8WX93 1383 aa21.42■■□□□ 1.02
SHOX-201ENST00000334060 USP16Q9Y5T5 823 aa21.41■■□□□ 1.02
SHOX-201ENST00000334060 HEG1Q9ULI3 1381 aa21.41■■□□□ 1.02
SHOX-201ENST00000334060 VAMP4O75379 141 aa21.4■■□□□ 1.02
SHOX-201ENST00000334060 ANXA1P04083 346 aa21.4■■□□□ 1.02
SHOX-201ENST00000334060 TTC5Q8N0Z6 440 aa21.4■■□□□ 1.02
SHOX-201ENST00000334060 TNS1Q9HBL0 1735 aaKnown RBP21.4■■□□□ 1.02
SHOX-201ENST00000334060 GIGYF1O75420 1035 aaPredicted RBP21.39■■□□□ 1.02
SHOX-201ENST00000334060 TWISTNBQ3B726 338 aaPredicted RBP21.39■■□□□ 1.02
SHOX-201ENST00000334060 SMIM5Q71RC9 77 aa21.39■■□□□ 1.02
SHOX-201ENST00000334060 BCL11BQ9C0K0 894 aaPredicted RBP21.39■■□□□ 1.02
SHOX-201ENST00000334060 ITPK1Q13572 414 aa21.39■■□□□ 1.01
SHOX-201ENST00000334060 EIF2S2P20042 333 aaKnown RBP21.38■■□□□ 1.01
SHOX-201ENST00000334060 DNAJC10Q8IXB1 793 aa21.38■■□□□ 1.01
SHOX-201ENST00000334060 BCAR3O75815 825 aa21.37■■□□□ 1.01
SHOX-201ENST00000334060 TJP1Q07157 1748 aa21.37■■□□□ 1.01
SHOX-201ENST00000334060 PROSER3Q2NL68 480 aa21.37■■□□□ 1.01
SHOX-201ENST00000334060 PROM2Q8N271 834 aa21.37■■□□□ 1.01
SHOX-201ENST00000334060 LRRC4BQ9NT99 713 aa21.37■■□□□ 1.01
SHOX-201ENST00000334060 LOC102724428A0A0B4J2F2 783 aa21.36■■□□□ 1.01
SHOX-201ENST00000334060 SIK1P57059 783 aa21.36■■□□□ 1.01
SHOX-201ENST00000334060 FMNL2Q96PY5 1086 aa21.36■■□□□ 1.01
SHOX-201ENST00000334060 DEFB132Q7Z7B7 95 aa21.35■■□□□ 1.01
SHOX-201ENST00000334060 BABAM1Q9NWV8 329 aa21.35■■□□□ 1.01
SHOX-201ENST00000334060 APBA3O96018 575 aa21.34■■□□□ 1.01
SHOX-201ENST00000334060 TNNQ9UQP3 1299 aa21.34■■□□□ 1.01
SHOX-201ENST00000334060 AMIGO3Q86WK7 504 aa21.34■■□□□ 1.01
SHOX-201ENST00000334060 SSH1Q8WYL5 1049 aa21.34■■□□□ 1.01
SHOX-201ENST00000334060 A1BGP04217 495 aa21.33■■□□□ 1.01
SHOX-201ENST00000334060 LY75O60449 1722 aa21.32■■□□□ 1
SHOX-201ENST00000334060 ATP6V1AP38606 617 aa21.32■■□□□ 1
SHOX-201ENST00000334060 RARSP54136 660 aaKnown RBP21.32■■□□□ 1
SHOX-201ENST00000334060 LINC00116Q8NCU8 138 aa21.32■■□□□ 1
SHOX-201ENST00000334060 PLIN1O60240 522 aa21.32■■□□□ 1
SHOX-201ENST00000334060 EN1Q05925 392 aaPredicted RBP21.32■■□□□ 1
SHOX-201ENST00000334060 G2E3Q7L622 706 aa21.32■■□□□ 1
SHOX-201ENST00000334060 CHPF2Q9P2E5 772 aa21.31■■□□□ 1
SHOX-201ENST00000334060 NBPF26B4DH59 902 aa21.3■■□□□ 1
SHOX-201ENST00000334060 SNRPA1P09661 255 aaKnown RBP21.3■■□□□ 1
SHOX-201ENST00000334060 PDIA6Q15084 440 aa21.3■■□□□ 1
SHOX-201ENST00000334060 HDGFL1Q5TGJ6 251 aa21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms