RNA–Protein interactions for RNA: ENST00000328392.10

SKP1-201, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 5

Gene SKP1, Length 572 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-201ENST00000328392 NOD1Q9Y239 953 aa7.59□□□□□ -1.19
SKP1-201ENST00000328392 TMEM229AB2RXF0 380 aa7.58□□□□□ -1.2
SKP1-201ENST00000328392 WASLO00401 505 aaPredicted RBP7.58□□□□□ -1.2
SKP1-201ENST00000328392 GTF2IP78347 998 aa7.58□□□□□ -1.2
SKP1-201ENST00000328392 GAS2L1Q99501 681 aaPredicted RBP7.58□□□□□ -1.2
SKP1-201ENST00000328392 SERTAD1Q9UHV2 236 aa7.58□□□□□ -1.2
SKP1-201ENST00000328392 USP17L3A6NCW0 530 aa7.57□□□□□ -1.2
SKP1-201ENST00000328392 USP17L4A6NCW7 530 aa7.57□□□□□ -1.2
SKP1-201ENST00000328392 ATP9BO43861 1147 aa7.57□□□□□ -1.2
SKP1-201ENST00000328392 TLR1Q15399 786 aa7.57□□□□□ -1.2
SKP1-201ENST00000328392 C4orf17Q53FE4 359 aa7.57□□□□□ -1.2
SKP1-201ENST00000328392 RNFT1Q5M7Z0 435 aa7.57□□□□□ -1.2
SKP1-201ENST00000328392 USP17L2Q6R6M4 530 aa7.57□□□□□ -1.2
SKP1-201ENST00000328392 TAS1R3Q7RTX0 852 aa7.57□□□□□ -1.2
SKP1-201ENST00000328392 USP17L1Q7RTZ2 530 aa7.57□□□□□ -1.2
SKP1-201ENST00000328392 TIMMDC1Q9NPL8 285 aa7.57□□□□□ -1.2
SKP1-201ENST00000328392 DBN1Q16643 649 aa7.56□□□□□ -1.2
SKP1-201ENST00000328392 TMEM214Q6NUQ4 689 aaKnown RBP7.56□□□□□ -1.2
SKP1-201ENST00000328392 RIPOR1Q6ZS17 1223 aa7.56□□□□□ -1.2
SKP1-201ENST00000328392 SV2AQ7L0J3 742 aa7.56□□□□□ -1.2
SKP1-201ENST00000328392 CCDC82Q8N4S0 544 aa7.56□□□□□ -1.2
SKP1-201ENST00000328392 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.56□□□□□ -1.23e-6■■■■■ 28.6
SKP1-201ENST00000328392 TFIP11Q9UBB9 837 aaKnown RBP7.56□□□□□ -1.2
SKP1-201ENST00000328392 KIAA1024Q9UPX6 916 aa7.56□□□□□ -1.2
SKP1-201ENST00000328392 DYRK1BQ9Y463 629 aa7.56□□□□□ -1.2
SKP1-201ENST00000328392 ZBTB7BO15156 539 aaPredicted RBP7.55□□□□□ -1.2
SKP1-201ENST00000328392 LZTS3O60299 673 aaPredicted RBP7.55□□□□□ -1.2
SKP1-201ENST00000328392 INSM1Q01101 510 aaPredicted RBP7.55□□□□□ -1.2
SKP1-201ENST00000328392 PPARGC1BQ86YN6 1023 aaKnown RBP7.55□□□□□ -1.2
SKP1-201ENST00000328392 PLEKHM2Q8IWE5 1019 aa7.55□□□□□ -1.2
SKP1-201ENST00000328392 CALR3Q96L12 384 aaKnown RBP7.55□□□□□ -1.2
SKP1-201ENST00000328392 CNTNAP3BQ96NU0 1288 aa7.55□□□□□ -1.2
SKP1-201ENST00000328392 COL25A1Q9BXS0 654 aaPredicted RBP7.55□□□□□ -1.2
SKP1-201ENST00000328392 CNTNAP3Q9BZ76 1288 aa7.55□□□□□ -1.2
SKP1-201ENST00000328392 USP3Q9Y6I4 520 aa7.55□□□□□ -1.2
SKP1-201ENST00000328392 SMTNP53814 917 aa7.54□□□□□ -1.2
SKP1-201ENST00000328392 CLDN10P78369 228 aa7.54□□□□□ -1.2
SKP1-201ENST00000328392 PSME1Q06323 249 aa7.54□□□□□ -1.2
SKP1-201ENST00000328392 WDR44Q5JSH3 913 aa7.54□□□□□ -1.2
SKP1-201ENST00000328392 GNASQ5JWF2 1037 aa7.54□□□□□ -1.2
SKP1-201ENST00000328392 ZNF837Q96EG3 531 aaPredicted RBP7.54□□□□□ -1.2
SKP1-201ENST00000328392 PALM3A6NDB9 673 aaPredicted RBP7.53□□□□□ -1.2
SKP1-201ENST00000328392 GPR25O00155 361 aa7.53□□□□□ -1.2
SKP1-201ENST00000328392 THBS1P07996 1170 aa7.53□□□□□ -1.2
SKP1-201ENST00000328392 TRIM22Q8IYM9 498 aa7.53□□□□□ -1.2
SKP1-201ENST00000328392 RHBDD1Q8TEB9 315 aa7.53□□□□□ -1.2
SKP1-201ENST00000328392 SLC4A9Q96Q91 983 aa7.53□□□□□ -1.2
SKP1-201ENST00000328392 GPAMQ9HCL2 828 aa7.53□□□□□ -1.2
SKP1-201ENST00000328392 ZNF358Q9NW07 568 aa7.53□□□□□ -1.2
SKP1-201ENST00000328392 MKRN1Q9UHC7 482 aaKnown RBP7.53□□□□□ -1.2
SKP1-201ENST00000328392 A6NJY4 79 aa7.52□□□□□ -1.21
SKP1-201ENST00000328392 F11P03951 625 aa7.52□□□□□ -1.21
SKP1-201ENST00000328392 TPCN2Q8NHX9 752 aa7.52□□□□□ -1.21
SKP1-201ENST00000328392 PPP1R12CQ9BZL4 782 aa7.52□□□□□ -1.21
SKP1-201ENST00000328392 IQSEC3Q9UPP2 1182 aaPredicted RBP7.52□□□□□ -1.21
SKP1-201ENST00000328392 MAFBQ9Y5Q3 323 aaPredicted RBP7.52□□□□□ -1.21
SKP1-201ENST00000328392 MSX1P28360 303 aa7.51□□□□□ -1.21
SKP1-201ENST00000328392 GTF2E1P29083 439 aaPredicted RBP7.51□□□□□ -1.21
SKP1-201ENST00000328392 PLA2G4AP47712 749 aa7.51□□□□□ -1.21
SKP1-201ENST00000328392 GAS6Q14393 721 aa7.51□□□□□ -1.21
SKP1-201ENST00000328392 MTFR1Q15390 333 aa7.51□□□□□ -1.21
SKP1-201ENST00000328392 TNS4Q8IZW8 715 aa7.51□□□□□ -1.21
SKP1-201ENST00000328392 ZNF295-AS1Q8N0V1 137 aa7.51□□□□□ -1.21
SKP1-201ENST00000328392 OGFOD1Q8N543 542 aa7.51□□□□□ -1.21
SKP1-201ENST00000328392 ZSCAN1Q8NBB4 408 aa7.51□□□□□ -1.21
SKP1-201ENST00000328392 GTPBP3Q969Y2 492 aaKnown RBP7.51□□□□□ -1.21
SKP1-201ENST00000328392 A0A1B0GTH6 734 aa7.5□□□□□ -1.21
SKP1-201ENST00000328392 TBCELQ5QJ74 424 aa7.5□□□□□ -1.21
SKP1-201ENST00000328392 CCDC102BQ68D86 513 aa7.5□□□□□ -1.21
SKP1-201ENST00000328392 TRIM50Q86XT4 487 aa7.5□□□□□ -1.21
SKP1-201ENST00000328392 CCDC97Q96F63 343 aaPredicted RBP7.5□□□□□ -1.21
SKP1-201ENST00000328392 ZNF594Q96JF6 807 aaPredicted RBP7.5□□□□□ -1.21
SKP1-201ENST00000328392 RUBCNLQ9H714 662 aa7.5□□□□□ -1.21
SKP1-201ENST00000328392 DNAAF2Q9NVR5 837 aaKnown RBP7.5□□□□□ -1.21
SKP1-201ENST00000328392 CDK2AP1O14519 115 aa7.49□□□□□ -1.21
SKP1-201ENST00000328392 DKK1O94907 266 aa7.49□□□□□ -1.21
SKP1-201ENST00000328392 NUCKS1Q9H1E3 243 aaKnown RBP7.49□□□□□ -1.21
SKP1-201ENST00000328392 PARP3Q9Y6F1 533 aa7.49□□□□□ -1.21
SKP1-201ENST00000328392 H7C1W4 665 aa7.48□□□□□ -1.21
SKP1-201ENST00000328392 BACH1O14867 736 aa7.48□□□□□ -1.21
SKP1-201ENST00000328392 LMOD1P29536 600 aaPredicted RBP7.48□□□□□ -1.21
SKP1-201ENST00000328392 ATP1A2P50993 1020 aa7.48□□□□□ -1.21
SKP1-201ENST00000328392 EPHA4P54764 986 aa7.48□□□□□ -1.21
SKP1-201ENST00000328392 KANK4Q5T7N3 995 aaPredicted RBP7.48□□□□□ -1.21
SKP1-201ENST00000328392 AIDAQ96BJ3 306 aa7.48□□□□□ -1.21
SKP1-201ENST00000328392 NIFKQ9BYG3 293 aaKnown RBP7.48□□□□□ -1.21
SKP1-201ENST00000328392 SCHIP1Q9P0W5 487 aaPredicted RBP7.48□□□□□ -1.21
SKP1-201ENST00000328392 STK17AQ9UEE5 414 aa7.48□□□□□ -1.21
SKP1-201ENST00000328392 SFI1A8K8P3 1242 aa7.47□□□□□ -1.21
SKP1-201ENST00000328392 RASA1P20936 1047 aa7.47□□□□□ -1.21
SKP1-201ENST00000328392 FOXK2Q01167 660 aa7.47□□□□□ -1.21
SKP1-201ENST00000328392 UBAP2LQ14157 1087 aaKnown RBP7.47□□□□□ -1.21
SKP1-201ENST00000328392 HOMEZQ8IX15 550 aa7.47□□□□□ -1.21
SKP1-201ENST00000328392 LARGE2Q8N3Y3 721 aa7.47□□□□□ -1.21
SKP1-201ENST00000328392 WHAMMQ8TF30 809 aa7.47□□□□□ -1.21
SKP1-201ENST00000328392 ZDHHC1Q8WTX9 485 aa7.47□□□□□ -1.21
SKP1-201ENST00000328392 GMCL1Q96IK5 515 aa7.47□□□□□ -1.21
SKP1-201ENST00000328392 ARXQ96QS3 562 aa7.47□□□□□ -1.21
SKP1-201ENST00000328392 CABP1Q9NZU7 370 aa7.47□□□□□ -1.21
SKP1-201ENST00000328392 ATP4AP20648 1035 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms