RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 FERP16591 822 aa16.54■□□□□ 0.24
COL7A1-201ENST00000328333 HMGB2P26583 209 aaKnown RBP16.54■□□□□ 0.24
COL7A1-201ENST00000328333 ATF7IPQ6VMQ6 1270 aa16.54■□□□□ 0.24
COL7A1-201ENST00000328333 KIF6Q6ZMV9 814 aa16.54■□□□□ 0.24
COL7A1-201ENST00000328333 C16orf45Q96MC5 204 aaPredicted RBP16.54■□□□□ 0.24
COL7A1-201ENST00000328333 SNW1Q13573 536 aaKnown RBP16.54■□□□□ 0.24
COL7A1-201ENST00000328333 IPO4Q8TEX9 1081 aaKnown RBP16.54■□□□□ 0.24
COL7A1-201ENST00000328333 KANK3Q6NY19 840 aa16.53■□□□□ 0.24
COL7A1-201ENST00000328333 SPECC1Q5M775 1068 aa16.53■□□□□ 0.24
COL7A1-201ENST00000328333 CCDC172P0C7W6 258 aa16.53■□□□□ 0.24
COL7A1-201ENST00000328333 LMAN1P49257 510 aa16.53■□□□□ 0.24
COL7A1-201ENST00000328333 SOGA3Q5TF21 947 aa16.53■□□□□ 0.24
COL7A1-201ENST00000328333 CLCN1P35523 988 aa16.53■□□□□ 0.24
COL7A1-201ENST00000328333 IKBKGQ9Y6K9 419 aa16.53■□□□□ 0.24
COL7A1-201ENST00000328333 HSF2BPO75031 334 aa16.53■□□□□ 0.24
COL7A1-201ENST00000328333 GTF2F1P35269 517 aaKnown RBP eCLIP16.53■□□□□ 0.24
COL7A1-201ENST00000328333 A0A1B0GUA9 196 aa16.53■□□□□ 0.24
COL7A1-201ENST00000328333 OPA1O60313 960 aa16.52■□□□□ 0.24
COL7A1-201ENST00000328333 NUP88Q99567 741 aaPredicted RBP16.52■□□□□ 0.24
COL7A1-201ENST00000328333 CCDC113Q9H0I3 377 aa16.52■□□□□ 0.24
COL7A1-201ENST00000328333 USH1CQ9Y6N9 552 aa16.52■□□□□ 0.24
COL7A1-201ENST00000328333 EVA1CP58658 441 aa16.52■□□□□ 0.24
COL7A1-201ENST00000328333 GRIPAP1Q4V328 841 aa16.52■□□□□ 0.24
COL7A1-201ENST00000328333 CCDC141Q6ZP82 1450 aa16.52■□□□□ 0.24
COL7A1-201ENST00000328333 PRPHP41219 470 aa16.52■□□□□ 0.23
COL7A1-201ENST00000328333 PIP4K2BP78356 416 aa16.52■□□□□ 0.23
COL7A1-201ENST00000328333 DDX23Q9BUQ8 820 aaKnown RBP16.52■□□□□ 0.23
COL7A1-201ENST00000328333 CCDC94Q9BW85 323 aaPredicted RBP16.52■□□□□ 0.23
COL7A1-201ENST00000328333 RASAL2Q9UJF2 1139 aa16.52■□□□□ 0.23
COL7A1-201ENST00000328333 CCDC50Q8IVM0 306 aa16.52■□□□□ 0.23
COL7A1-201ENST00000328333 UBAC1Q9BSL1 405 aa16.52■□□□□ 0.23
COL7A1-201ENST00000328333 NEBLO76041 1014 aa16.51■□□□□ 0.23
COL7A1-201ENST00000328333 PNISRQ8TF01 805 aaKnown RBP16.51■□□□□ 0.23
COL7A1-201ENST00000328333 CEP83Q9Y592 693 aa16.51■□□□□ 0.23
COL7A1-201ENST00000328333 AIMP1Q12904 312 aaKnown RBP16.51■□□□□ 0.23
COL7A1-201ENST00000328333 KIF3CO14782 793 aa16.51■□□□□ 0.23
COL7A1-201ENST00000328333 CTAGE1Q96RT6 745 aa16.51■□□□□ 0.23
COL7A1-201ENST00000328333 CASTP20810 708 aaKnown RBP16.51■□□□□ 0.23
COL7A1-201ENST00000328333 CASKIN1Q8WXD9 1431 aa16.5■□□□□ 0.23
COL7A1-201ENST00000328333 CCDC155Q8N6L0 562 aa16.5■□□□□ 0.23
COL7A1-201ENST00000328333 CEP135Q66GS9 1140 aa16.5■□□□□ 0.23
COL7A1-201ENST00000328333 CACNA2D4Q7Z3S7 1137 aa16.5■□□□□ 0.23
COL7A1-201ENST00000328333 EBAG9O00559 213 aa16.5■□□□□ 0.23
COL7A1-201ENST00000328333 TTC31Q49AM3 519 aaPredicted RBP16.5■□□□□ 0.23
COL7A1-201ENST00000328333 RAPGEF4Q8WZA2 1011 aa16.5■□□□□ 0.23
COL7A1-201ENST00000328333 ZMYND15Q9H091 742 aa16.5■□□□□ 0.23
COL7A1-201ENST00000328333 TIAM1Q13009 1591 aa16.5■□□□□ 0.23
COL7A1-201ENST00000328333 TTC39AQ5SRH9 613 aa16.5■□□□□ 0.23
COL7A1-201ENST00000328333 ANKRD50Q9ULJ7 1429 aa16.5■□□□□ 0.23
COL7A1-201ENST00000328333 NOL3O60936 208 aaKnown RBP16.49■□□□□ 0.23
COL7A1-201ENST00000328333 UBE2HP62256 183 aa16.49■□□□□ 0.23
COL7A1-201ENST00000328333 RAB11FIP3O75154 756 aa16.49■□□□□ 0.23
COL7A1-201ENST00000328333 ZFYP08048 801 aaPredicted RBP16.49■□□□□ 0.23
COL7A1-201ENST00000328333 CCDC178Q5BJE1 867 aa16.49■□□□□ 0.23
COL7A1-201ENST00000328333 URI1O94763 535 aaPredicted RBP16.49■□□□□ 0.23
COL7A1-201ENST00000328333 ITSN2Q9NZM3 1697 aa16.48■□□□□ 0.23
COL7A1-201ENST00000328333 KLHL40Q2TBA0 621 aa16.48■□□□□ 0.23
COL7A1-201ENST00000328333 GOPCQ9HD26 462 aa16.48■□□□□ 0.23
COL7A1-201ENST00000328333 CTCFLQ8NI51 663 aaPredicted RBP16.48■□□□□ 0.23
COL7A1-201ENST00000328333 RAI14Q9P0K7 980 aa16.48■□□□□ 0.23
COL7A1-201ENST00000328333 B4GALNT4Q76KP1 1039 aa16.48■□□□□ 0.23
COL7A1-201ENST00000328333 RBM28Q9NW13 759 aaKnown RBP16.48■□□□□ 0.23
COL7A1-201ENST00000328333 CFAP65Q6ZU64 1925 aaKnown RBP16.48■□□□□ 0.23
COL7A1-201ENST00000328333 WDR97A6NE52 1622 aa16.48■□□□□ 0.23
COL7A1-201ENST00000328333 TNIP1Q15025 636 aa16.48■□□□□ 0.23
COL7A1-201ENST00000328333 FBF1Q8TES7 1133 aa16.48■□□□□ 0.23
COL7A1-201ENST00000328333 TTC12Q9H892 705 aaPredicted RBP16.48■□□□□ 0.23
COL7A1-201ENST00000328333 SEC63Q9UGP8 760 aaKnown RBP16.48■□□□□ 0.23
COL7A1-201ENST00000328333 ABCC11Q96J66 1382 aa16.48■□□□□ 0.23
COL7A1-201ENST00000328333 ARHGAP5Q13017 1502 aa16.48■□□□□ 0.23
COL7A1-201ENST00000328333 HLTFQ14527 1009 aaKnown RBP eCLIP16.47■□□□□ 0.23
COL7A1-201ENST00000328333 STIM2Q9P246 746 aa16.47■□□□□ 0.23
COL7A1-201ENST00000328333 SH2D4BQ5SQS7 431 aa16.47■□□□□ 0.23
COL7A1-201ENST00000328333 TCP11L2Q8N4U5 519 aa16.47■□□□□ 0.23
COL7A1-201ENST00000328333 ATP2B1P20020 1258 aa16.47■□□□□ 0.23
COL7A1-201ENST00000328333 FMNL3Q8IVF7 1028 aa16.47■□□□□ 0.23
COL7A1-201ENST00000328333 TSNARE1Q96NA8 513 aa16.47■□□□□ 0.23
COL7A1-201ENST00000328333 HNRNPMP52272 730 aaKnown RBP eCLIP16.47■□□□□ 0.23
COL7A1-201ENST00000328333 TWISTNBQ3B726 338 aaPredicted RBP16.47■□□□□ 0.23
COL7A1-201ENST00000328333 CCDC121Q6ZUS5 278 aa16.46■□□□□ 0.23
COL7A1-201ENST00000328333 CCDC110Q8TBZ0 833 aa16.46■□□□□ 0.23
COL7A1-201ENST00000328333 RPGRIP1LQ68CZ1 1315 aa16.46■□□□□ 0.23
COL7A1-201ENST00000328333 CTAGE9A4FU28 777 aa16.46■□□□□ 0.23
COL7A1-201ENST00000328333 GON4LQ3T8J9 2241 aa16.46■□□□□ 0.23
COL7A1-201ENST00000328333 KIF4AO95239 1232 aa16.46■□□□□ 0.23
COL7A1-201ENST00000328333 NAP1L3Q99457 506 aaPredicted RBP16.46■□□□□ 0.23
COL7A1-201ENST00000328333 GBP6Q6ZN66 633 aa16.46■□□□□ 0.23
COL7A1-201ENST00000328333 SMC6Q96SB8 1091 aa16.46■□□□□ 0.23
COL7A1-201ENST00000328333 TDO2P48775 406 aa16.46■□□□□ 0.22
COL7A1-201ENST00000328333 MAPK8IP2Q13387 824 aaPredicted RBP16.46■□□□□ 0.22
COL7A1-201ENST00000328333 UBE4AQ14139 1066 aa16.46■□□□□ 0.22
COL7A1-201ENST00000328333 CCDC6Q16204 474 aa16.46■□□□□ 0.22
COL7A1-201ENST00000328333 LARP1Q6PKG0 1096 aaKnown RBP16.45■□□□□ 0.22
COL7A1-201ENST00000328333 CEP128Q6ZU80 1094 aa16.45■□□□□ 0.22
COL7A1-201ENST00000328333 KIF5BP33176 963 aa16.45■□□□□ 0.22
COL7A1-201ENST00000328333 ADAMTS8Q9UP79 889 aa16.45■□□□□ 0.22
COL7A1-201ENST00000328333 TMCO5BA8MYB1 307 aa16.45■□□□□ 0.22
COL7A1-201ENST00000328333 JAKMIP2Q96AA8 810 aa16.45■□□□□ 0.22
COL7A1-201ENST00000328333 IFT74Q96LB3 600 aa16.45■□□□□ 0.22
COL7A1-201ENST00000328333 RASSF4Q9H2L5 321 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms