RNA–Protein interactions for RNA: ENST00000327028.8

VIPAS39-201, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5 BASIC

Gene VIPAS39, Length 2,614 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-201ENST00000327028 ERVV-2B6SEH9 535 aa13.26□□□□□ -0.29
VIPAS39-201ENST00000327028 QTRT2Q9H974 415 aaKnown RBP13.26□□□□□ -0.29
VIPAS39-201ENST00000327028 MIS18AQ9NYP9 233 aa13.25□□□□□ -0.29
VIPAS39-201ENST00000327028 ITGB4P16144 1822 aa13.25□□□□□ -0.29
VIPAS39-201ENST00000327028 BTBD11A6QL63 1104 aa13.24□□□□□ -0.29
VIPAS39-201ENST00000327028 ONECUT3O60422 494 aaPredicted RBP13.24□□□□□ -0.29
VIPAS39-201ENST00000327028 CABP4P57796 275 aa13.24□□□□□ -0.29
VIPAS39-201ENST00000327028 RNF123Q5XPI4 1314 aa13.23□□□□□ -0.29
VIPAS39-201ENST00000327028 SUPT16HQ9Y5B9 1047 aaKnown RBP13.23□□□□□ -0.29
VIPAS39-201ENST00000327028 UBR2Q8IWV8 1755 aa13.23□□□□□ -0.29
VIPAS39-201ENST00000327028 MARCH10Q8NA82 808 aaPredicted RBP13.23□□□□□ -0.29
VIPAS39-201ENST00000327028 C8orf58Q8NAV2 365 aa13.23□□□□□ -0.29
VIPAS39-201ENST00000327028 NFATC2IPQ8NCF5 419 aa13.23□□□□□ -0.29
VIPAS39-201ENST00000327028 A0A0G2JS52 829 aa13.22□□□□□ -0.29
VIPAS39-201ENST00000327028 MYT1Q01538 1121 aa13.22□□□□□ -0.29
VIPAS39-201ENST00000327028 TWISTNBQ3B726 338 aaPredicted RBP13.22□□□□□ -0.29
VIPAS39-201ENST00000327028 ZNF428Q96B54 188 aa13.22□□□□□ -0.29
VIPAS39-201ENST00000327028 SOS1Q07889 1333 aaPredicted RBP13.22□□□□□ -0.29
VIPAS39-201ENST00000327028 TSPYL6Q8N831 410 aa13.22□□□□□ -0.29
VIPAS39-201ENST00000327028 RARSP54136 660 aaKnown RBP13.21□□□□□ -0.29
VIPAS39-201ENST00000327028 VAMP4O75379 141 aa13.21□□□□□ -0.3
VIPAS39-201ENST00000327028 EIF4A1P60842 406 aaKnown RBP13.21□□□□□ -0.3
VIPAS39-201ENST00000327028 KRT24Q2M2I5 525 aa13.21□□□□□ -0.3
VIPAS39-201ENST00000327028 TMOD3Q9NYL9 352 aa13.2□□□□□ -0.3
VIPAS39-201ENST00000327028 BCL9O00512 1426 aa13.2□□□□□ -0.3
VIPAS39-201ENST00000327028 KCNQ3O43525 872 aa13.2□□□□□ -0.3
VIPAS39-201ENST00000327028 RBM6P78332 1123 aaKnown RBP13.2□□□□□ -0.3
VIPAS39-201ENST00000327028 ZNF790Q6PG37 636 aa13.2□□□□□ -0.3
VIPAS39-201ENST00000327028 SEPT12Q8IYM1 358 aa13.2□□□□□ -0.3
VIPAS39-201ENST00000327028 HEG1Q9ULI3 1381 aa13.2□□□□□ -0.3
VIPAS39-201ENST00000327028 BRWD3Q6RI45 1802 aa13.19□□□□□ -0.3
VIPAS39-201ENST00000327028 RRP1P56182 461 aaKnown RBP13.19□□□□□ -0.3
VIPAS39-201ENST00000327028 ALDH1L2Q3SY69 923 aa13.19□□□□□ -0.3
VIPAS39-201ENST00000327028 KCPQ6ZWJ8 1503 aa13.19□□□□□ -0.3
VIPAS39-201ENST00000327028 C5P01031 1676 aa13.19□□□□□ -0.3
VIPAS39-201ENST00000327028 ELL2O00472 640 aaPredicted RBP13.19□□□□□ -0.3
VIPAS39-201ENST00000327028 NHSQ6T4R5 1651 aa13.18□□□□□ -0.3
VIPAS39-201ENST00000327028 HOXB7P09629 217 aa13.18□□□□□ -0.3
VIPAS39-201ENST00000327028 LAMB4A4D0S4 1761 aa13.18□□□□□ -0.3
VIPAS39-201ENST00000327028 BCAR3O75815 825 aa13.18□□□□□ -0.3
VIPAS39-201ENST00000327028 SLC39A6Q13433 755 aa13.18□□□□□ -0.3
VIPAS39-201ENST00000327028 TTC5Q8N0Z6 440 aa13.18□□□□□ -0.3
VIPAS39-201ENST00000327028 SSH1Q8WYL5 1049 aa13.18□□□□□ -0.3
VIPAS39-201ENST00000327028 PIGBQ92521 554 aa13.17□□□□□ -0.3
VIPAS39-201ENST00000327028 SMC4Q9NTJ3 1288 aa13.17□□□□□ -0.3
VIPAS39-201ENST00000327028 RGS17Q9UGC6 210 aaPredicted RBP13.17□□□□□ -0.3
VIPAS39-201ENST00000327028 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.16□□□□□ -0.3
VIPAS39-201ENST00000327028 SBF2Q86WG5 1849 aa13.16□□□□□ -0.3
VIPAS39-201ENST00000327028 KAT6BQ8WYB5 2073 aa13.16□□□□□ -0.3
VIPAS39-201ENST00000327028 PRIM1P49642 420 aaKnown RBP13.16□□□□□ -0.3
VIPAS39-201ENST00000327028 BRPF1P55201 1214 aaPredicted RBP13.16□□□□□ -0.3
VIPAS39-201ENST00000327028 FMNL2Q96PY5 1086 aa13.16□□□□□ -0.3
VIPAS39-201ENST00000327028 BCL2L13Q9BXK5 485 aa13.16□□□□□ -0.3
VIPAS39-201ENST00000327028 CACNA1FO60840 1977 aa13.15□□□□□ -0.3
VIPAS39-201ENST00000327028 NEFLP07196 543 aa13.15□□□□□ -0.3
VIPAS39-201ENST00000327028 RXRBP28702 533 aa13.15□□□□□ -0.3
VIPAS39-201ENST00000327028 ZNF496Q96IT1 587 aaPredicted RBP13.15□□□□□ -0.3
VIPAS39-201ENST00000327028 GIGYF1O75420 1035 aaPredicted RBP13.15□□□□□ -0.3
VIPAS39-201ENST00000327028 CHMP4AQ9BY43 222 aa13.15□□□□□ -0.3
VIPAS39-201ENST00000327028 KIF16BQ96L93 1317 aa13.15□□□□□ -0.3
VIPAS39-201ENST00000327028 MRPL50Q8N5N7 158 aaKnown RBP13.14□□□□□ -0.31
VIPAS39-201ENST00000327028 SYTL4Q96C24 671 aaPredicted RBP13.14□□□□□ -0.31
VIPAS39-201ENST00000327028 ACSBG1Q96GR2 724 aa13.14□□□□□ -0.31
VIPAS39-201ENST00000327028 RGS12O14924 1447 aa13.14□□□□□ -0.31
VIPAS39-201ENST00000327028 CCDC30Q5VVM6 783 aa13.14□□□□□ -0.31
VIPAS39-201ENST00000327028 ATG3Q9NT62 314 aa13.14□□□□□ -0.31
VIPAS39-201ENST00000327028 HDGFL1Q5TGJ6 251 aa13.13□□□□□ -0.31
VIPAS39-201ENST00000327028 CICQ96RK0 1608 aaPredicted RBP13.13□□□□□ -0.31
VIPAS39-201ENST00000327028 BTAF1O14981 1849 aa13.13□□□□□ -0.31
VIPAS39-201ENST00000327028 POTEAQ6S8J7 498 aa13.13□□□□□ -0.31
VIPAS39-201ENST00000327028 KRT27Q7Z3Y8 459 aa13.13□□□□□ -0.31
VIPAS39-201ENST00000327028 ASAP1Q9ULH1 1129 aa13.13□□□□□ -0.31
VIPAS39-201ENST00000327028 PLIN1O60240 522 aa13.12□□□□□ -0.31
VIPAS39-201ENST00000327028 SNRPA1P09661 255 aaKnown RBP13.12□□□□□ -0.31
VIPAS39-201ENST00000327028 ILDR1Q86SU0 546 aaPredicted RBP13.12□□□□□ -0.31
VIPAS39-201ENST00000327028 CANXP27824 592 aaKnown RBP13.12□□□□□ -0.31
VIPAS39-201ENST00000327028 STK31Q9BXU1 1019 aa13.12□□□□□ -0.31
VIPAS39-201ENST00000327028 TCERG1O14776 1098 aaKnown RBP13.11□□□□□ -0.31
VIPAS39-201ENST00000327028 FRAT1Q92837 279 aaPredicted RBP13.11□□□□□ -0.31
VIPAS39-201ENST00000327028 TJP1Q07157 1748 aa13.11□□□□□ -0.31
VIPAS39-201ENST00000327028 ZNF831Q5JPB2 1677 aa13.11□□□□□ -0.31
VIPAS39-201ENST00000327028 PRAMEF22A3QJZ6 481 aa13.11□□□□□ -0.31
VIPAS39-201ENST00000327028 ZKSCAN2Q63HK3 967 aa13.11□□□□□ -0.31
VIPAS39-201ENST00000327028 KCNQ2O43526 872 aa13.1□□□□□ -0.31
VIPAS39-201ENST00000327028 FAM182BQ5T319 152 aa13.1□□□□□ -0.31
VIPAS39-201ENST00000327028 NOB1Q9ULX3 412 aaKnown RBP13.1□□□□□ -0.31
VIPAS39-201ENST00000327028 IPO8O15397 1037 aaKnown RBP13.1□□□□□ -0.31
VIPAS39-201ENST00000327028 PTCD1O75127 700 aaKnown RBP13.1□□□□□ -0.31
VIPAS39-201ENST00000327028 EIF2S2P20042 333 aaKnown RBP13.1□□□□□ -0.31
VIPAS39-201ENST00000327028 VSIG10Q8N0Z9 540 aa13.1□□□□□ -0.31
VIPAS39-201ENST00000327028 SLC4A2P04920 1241 aa13.09□□□□□ -0.31
VIPAS39-201ENST00000327028 IRX6P78412 446 aaPredicted RBP13.09□□□□□ -0.31
VIPAS39-201ENST00000327028 ARHGAP45Q92619 1136 aa13.09□□□□□ -0.31
VIPAS39-201ENST00000327028 NECTIN2Q92692 538 aa13.09□□□□□ -0.31
VIPAS39-201ENST00000327028 SMARCC1Q92922 1105 aaPredicted RBP13.09□□□□□ -0.31
VIPAS39-201ENST00000327028 FKBP8Q14318 412 aa13.09□□□□□ -0.31
VIPAS39-201ENST00000327028 PDE3AQ14432 1141 aa13.09□□□□□ -0.31
VIPAS39-201ENST00000327028 FAM196AQ6ZSG2 479 aa13.09□□□□□ -0.31
VIPAS39-201ENST00000327028 GTF3C3Q9Y5Q9 886 aa13.09□□□□□ -0.31
VIPAS39-201ENST00000327028 PALLDQ8WX93 1383 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms