RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 ATG3Q9NT62 314 aa21.57■■□□□ 1.04
HDDC2-201ENST00000318787 ATP6V1AP38606 617 aa21.56■■□□□ 1.04
HDDC2-201ENST00000318787 DDX10Q13206 875 aaKnown RBP21.56■■□□□ 1.04
HDDC2-201ENST00000318787 AKAP4Q5JQC9 854 aa21.56■■□□□ 1.04
HDDC2-201ENST00000318787 UBR3Q6ZT12 1888 aa21.55■■□□□ 1.04
HDDC2-201ENST00000318787 PHF14O94880 888 aa21.55■■□□□ 1.04
HDDC2-201ENST00000318787 MTHFSDQ2M296 383 aaKnown RBP21.55■■□□□ 1.04
HDDC2-201ENST00000318787 NUDCQ9Y266 331 aa21.55■■□□□ 1.04
HDDC2-201ENST00000318787 PTGER2P43116 358 aa21.54■■□□□ 1.04
HDDC2-201ENST00000318787 KLHL34Q8N239 644 aa21.54■■□□□ 1.04
HDDC2-201ENST00000318787 NFATC2IPQ8NCF5 419 aa21.54■■□□□ 1.04
HDDC2-201ENST00000318787 U2AF1L5P0DN76 240 aaPredicted RBP21.52■■□□□ 1.04
HDDC2-201ENST00000318787 HMGB2P26583 209 aaKnown RBP21.52■■□□□ 1.04
HDDC2-201ENST00000318787 U2AF1Q01081 240 aaKnown RBP eCLIP21.52■■□□□ 1.04
HDDC2-201ENST00000318787 COL23A1Q86Y22 540 aaPredicted RBP21.52■■□□□ 1.04
HDDC2-201ENST00000318787 LINC00116Q8NCU8 138 aa21.52■■□□□ 1.04
HDDC2-201ENST00000318787 PTCD1O75127 700 aaKnown RBP21.51■■□□□ 1.03
HDDC2-201ENST00000318787 MSL1Q68DK7 614 aa21.51■■□□□ 1.03
HDDC2-201ENST00000318787 SMIM5Q71RC9 77 aa21.51■■□□□ 1.03
HDDC2-201ENST00000318787 LGR6Q9HBX8 967 aa21.51■■□□□ 1.03
HDDC2-201ENST00000318787 POLD1P28340 1107 aa21.5■■□□□ 1.03
HDDC2-201ENST00000318787 PRKAR2BP31323 418 aa21.5■■□□□ 1.03
HDDC2-201ENST00000318787 ITPK1Q13572 414 aa21.5■■□□□ 1.03
HDDC2-201ENST00000318787 SLC16A10Q8TF71 515 aa21.5■■□□□ 1.03
HDDC2-201ENST00000318787 COL5A3P25940 1745 aaPredicted RBP21.5■■□□□ 1.03
HDDC2-201ENST00000318787 RNMTO43148 476 aaKnown RBP21.49■■□□□ 1.03
HDDC2-201ENST00000318787 ARXQ96QS3 562 aa21.49■■□□□ 1.03
HDDC2-201ENST00000318787 GNPATO15228 680 aa21.48■■□□□ 1.03
HDDC2-201ENST00000318787 GAS2L2Q8NHY3 880 aa21.48■■□□□ 1.03
HDDC2-201ENST00000318787 CNKSR2Q8WXI2 1034 aa21.48■■□□□ 1.03
HDDC2-201ENST00000318787 FHDC1Q9C0D6 1143 aaPredicted RBP21.48■■□□□ 1.03
HDDC2-201ENST00000318787 SLC52A2Q9HAB3 445 aa21.48■■□□□ 1.03
HDDC2-201ENST00000318787 ZNF831Q5JPB2 1677 aa21.47■■□□□ 1.03
HDDC2-201ENST00000318787 ZEB1P37275 1124 aaPredicted RBP21.47■■□□□ 1.03
HDDC2-201ENST00000318787 FLAD1Q8NFF5 587 aa21.47■■□□□ 1.03
HDDC2-201ENST00000318787 SGIP1Q9BQI5 828 aa21.47■■□□□ 1.03
HDDC2-201ENST00000318787 MAP3K5Q99683 1374 aa21.46■■□□□ 1.03
HDDC2-201ENST00000318787 TJP1Q07157 1748 aa21.46■■□□□ 1.03
HDDC2-201ENST00000318787 COL24A1Q17RW2 1714 aa21.46■■□□□ 1.03
HDDC2-201ENST00000318787 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.46■■□□□ 1.03
HDDC2-201ENST00000318787 DCAF8L1A6NGE4 600 aa21.46■■□□□ 1.03
HDDC2-201ENST00000318787 AMIGO3Q86WK7 504 aa21.46■■□□□ 1.03
HDDC2-201ENST00000318787 RSPH6AQ9H0K4 717 aa21.46■■□□□ 1.03
HDDC2-201ENST00000318787 ADAMTS7Q9UKP4 1686 aa21.45■■□□□ 1.02
HDDC2-201ENST00000318787 MRC1P22897 1456 aa21.45■■□□□ 1.02
HDDC2-201ENST00000318787 GNAT3A8MTJ3 354 aa21.45■■□□□ 1.02
HDDC2-201ENST00000318787 SLC39A6Q13433 755 aa21.45■■□□□ 1.02
HDDC2-201ENST00000318787 PHACTR3Q96KR7 559 aa21.45■■□□□ 1.02
HDDC2-201ENST00000318787 SLC4A9Q96Q91 983 aa21.45■■□□□ 1.02
HDDC2-201ENST00000318787 TEFQ10587 303 aa21.43■■□□□ 1.02
HDDC2-201ENST00000318787 MYH14Q7Z406 1995 aaKnown RBP21.42■■□□□ 1.02
HDDC2-201ENST00000318787 SYT17Q9BSW7 474 aa21.42■■□□□ 1.02
HDDC2-201ENST00000318787 SIPA1L3O60292 1781 aaPredicted RBP21.41■■□□□ 1.02
HDDC2-201ENST00000318787 NEFMP07197 916 aa21.41■■□□□ 1.02
HDDC2-201ENST00000318787 SSFA2P28290 1259 aa21.41■■□□□ 1.02
HDDC2-201ENST00000318787 RTCBQ9Y3I0 505 aaKnown RBP21.41■■□□□ 1.02
HDDC2-201ENST00000318787 DLG5Q8TDM6 1919 aa21.41■■□□□ 1.02
HDDC2-201ENST00000318787 RALBP1Q15311 655 aa21.4■■□□□ 1.02
HDDC2-201ENST00000318787 C4AP0C0L4 1744 aa21.4■■□□□ 1.02
HDDC2-201ENST00000318787 UBR2Q8IWV8 1755 aa21.39■■□□□ 1.02
HDDC2-201ENST00000318787 FCHSD2O94868 740 aa21.39■■□□□ 1.02
HDDC2-201ENST00000318787 TTC5Q8N0Z6 440 aa21.39■■□□□ 1.02
HDDC2-201ENST00000318787 IL17REQ8NFR9 667 aa21.38■■□□□ 1.01
HDDC2-201ENST00000318787 RTF1Q92541 710 aaKnown RBP21.38■■□□□ 1.01
HDDC2-201ENST00000318787 KCPQ6ZWJ8 1503 aa21.37■■□□□ 1.01
HDDC2-201ENST00000318787 TRAPPC3LQ5T215 181 aa21.37■■□□□ 1.01
HDDC2-201ENST00000318787 CNTNAP4Q9C0A0 1308 aa21.37■■□□□ 1.01
HDDC2-201ENST00000318787 CICQ96RK0 1608 aaPredicted RBP21.37■■□□□ 1.01
HDDC2-201ENST00000318787 CRKLP46109 303 aaKnown RBP21.36■■□□□ 1.01
HDDC2-201ENST00000318787 DNAJC10Q8IXB1 793 aa21.36■■□□□ 1.01
HDDC2-201ENST00000318787 PELP1Q8IZL8 1130 aaKnown RBP21.36■■□□□ 1.01
HDDC2-201ENST00000318787 MCM10Q7L590 875 aa21.36■■□□□ 1.01
HDDC2-201ENST00000318787 RFC4P35249 363 aa21.35■■□□□ 1.01
HDDC2-201ENST00000318787 RC3H1Q5TC82 1133 aaKnown RBP21.35■■□□□ 1.01
HDDC2-201ENST00000318787 MYBBP1AQ9BQG0 1328 aaKnown RBP21.34■■□□□ 1.01
HDDC2-201ENST00000318787 DCTN1Q14203 1278 aa21.34■■□□□ 1.01
HDDC2-201ENST00000318787 MAPK8IP3Q9UPT6 1336 aa21.33■■□□□ 1.01
HDDC2-201ENST00000318787 RPS6KA4O75676 772 aa21.33■■□□□ 1
HDDC2-201ENST00000318787 ARHGEF1Q92888 912 aaKnown RBP21.33■■□□□ 1
HDDC2-201ENST00000318787 UTRNP46939 3433 aa21.33■■□□□ 1
HDDC2-201ENST00000318787 BTBD11A6QL63 1104 aa21.32■■□□□ 1
HDDC2-201ENST00000318787 NLGN2Q8NFZ4 835 aa21.32■■□□□ 1
HDDC2-201ENST00000318787 YY1P25490 414 aa21.31■■□□□ 1
HDDC2-201ENST00000318787 ZNF790Q6PG37 636 aa21.31■■□□□ 1
HDDC2-201ENST00000318787 CCDC87Q9NVE4 849 aa21.31■■□□□ 1
HDDC2-201ENST00000318787 CEMIPQ8WUJ3 1361 aa21.31■■□□□ 1
HDDC2-201ENST00000318787 GPR162Q16538 588 aa21.29■■□□□ 1
HDDC2-201ENST00000318787 ZNF496Q96IT1 587 aaPredicted RBP21.29■■□□□ 1
HDDC2-201ENST00000318787 PNNQ9H307 717 aaKnown RBP21.29■■□□□ 1
HDDC2-201ENST00000318787 MMP10P09238 476 aa21.28■■□□□ 1
HDDC2-201ENST00000318787 CYP19A1P11511 503 aaPredicted RBP21.28■■□□□ 1
HDDC2-201ENST00000318787 INTS5Q6P9B9 1019 aaKnown RBP21.28■■□□□ 1
HDDC2-201ENST00000318787 SRP68Q9UHB9 627 aaKnown RBP21.28■■□□□ 1
HDDC2-201ENST00000318787 KCNQ3O43525 872 aa21.27■■□□□ 1
HDDC2-201ENST00000318787 CANXP27824 592 aaKnown RBP21.27■■□□□ 1
HDDC2-201ENST00000318787 NCBP3Q53F19 620 aaKnown RBP21.27■■□□□ 1
HDDC2-201ENST00000318787 FMNL2Q96PY5 1086 aa21.27■■□□□ 1
HDDC2-201ENST00000318787 ZNF330Q9Y3S2 320 aaPredicted RBP21.27■■□□□ 1
HDDC2-201ENST00000318787 HEG1Q9ULI3 1381 aa21.26■□□□□ 0.99
HDDC2-201ENST00000318787 WDR43Q15061 677 aaKnown RBP eCLIP21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms