RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 DACH1Q9UI36 760 aa13.54□□□□□ -0.24
VPS39-201ENST00000318006 BRPF1P55201 1214 aaPredicted RBP13.54□□□□□ -0.24
VPS39-201ENST00000318006 GIMAP7Q8NHV1 300 aa13.54□□□□□ -0.24
VPS39-201ENST00000318006 XRCC6P12956 609 aaKnown RBP eCLIP13.53□□□□□ -0.24
VPS39-201ENST00000318006 XBP1P17861 261 aa13.53□□□□□ -0.24
VPS39-201ENST00000318006 CCDC158Q5M9N0 1113 aa13.53□□□□□ -0.24
VPS39-201ENST00000318006 UPF3BQ9BZI7 483 aaKnown RBP13.53□□□□□ -0.24
VPS39-201ENST00000318006 SYCP2Q9BX26 1530 aa13.53□□□□□ -0.24
VPS39-201ENST00000318006 RAD21O60216 631 aa13.53□□□□□ -0.24
VPS39-201ENST00000318006 SSFA2P28290 1259 aa13.53□□□□□ -0.24
VPS39-201ENST00000318006 BRMS1Q9HCU9 246 aa13.53□□□□□ -0.24
VPS39-201ENST00000318006 ZNHIT6Q9NWK9 470 aaKnown RBP13.53□□□□□ -0.24
VPS39-201ENST00000318006 CFAP45Q9UL16 551 aa13.53□□□□□ -0.24
VPS39-201ENST00000318006 TNNT1P13805 278 aa13.52□□□□□ -0.24
VPS39-201ENST00000318006 IL1RAPL2Q9NP60 686 aa13.52□□□□□ -0.24
VPS39-201ENST00000318006 PRAG1Q86YV5 1406 aa13.52□□□□□ -0.24
VPS39-201ENST00000318006 CNNM1Q9NRU3 951 aa13.52□□□□□ -0.24
VPS39-201ENST00000318006 CEP170Q5SW79 1584 aa13.52□□□□□ -0.25
VPS39-201ENST00000318006 PRM3Q9NNZ6 103 aa13.52□□□□□ -0.25
VPS39-201ENST00000318006 PHF8Q9UPP1 1060 aa13.52□□□□□ -0.25
VPS39-201ENST00000318006 TIGD1Q96MW7 591 aa13.52□□□□□ -0.25
VPS39-201ENST00000318006 MAGEC2Q9UBF1 373 aaPredicted RBP13.52□□□□□ -0.25
VPS39-201ENST00000318006 USP25Q9UHP3 1055 aa13.52□□□□□ -0.25
VPS39-201ENST00000318006 SART3Q15020 963 aaKnown RBP13.51□□□□□ -0.25
VPS39-201ENST00000318006 TAF7Q15545 349 aaPredicted RBP13.51□□□□□ -0.25
VPS39-201ENST00000318006 KLHL40Q2TBA0 621 aa13.51□□□□□ -0.25
VPS39-201ENST00000318006 AACSQ86V21 672 aa13.51□□□□□ -0.25
VPS39-201ENST00000318006 SMTNL1A8MU46 457 aa13.51□□□□□ -0.25
VPS39-201ENST00000318006 SFPQP23246 707 aaKnown RBP eCLIP13.51□□□□□ -0.25
VPS39-201ENST00000318006 IQCEQ6IPM2 695 aa13.51□□□□□ -0.25
VPS39-201ENST00000318006 TRERF1Q96PN7 1200 aa13.51□□□□□ -0.25
VPS39-201ENST00000318006 EXOC6BQ9Y2D4 811 aa13.51□□□□□ -0.25
VPS39-201ENST00000318006 FYB1O15117 783 aa13.51□□□□□ -0.25
VPS39-201ENST00000318006 CEBPAP49715 358 aaPredicted RBP13.51□□□□□ -0.25
VPS39-201ENST00000318006 TTC39AQ5SRH9 613 aa13.51□□□□□ -0.25
VPS39-201ENST00000318006 ASXL2Q76L83 1435 aa13.51□□□□□ -0.25
VPS39-201ENST00000318006 ANKRD36BQ8N2N9 1353 aa13.51□□□□□ -0.25
VPS39-201ENST00000318006 MAP4K4O95819 1239 aaPredicted RBP13.51□□□□□ -0.25
VPS39-201ENST00000318006 CCDC181Q5TID7 509 aa13.51□□□□□ -0.25
VPS39-201ENST00000318006 ERLIN2O94905 339 aa13.5□□□□□ -0.25
VPS39-201ENST00000318006 CT47A1Q5JQC4 288 aaPredicted RBP13.5□□□□□ -0.25
VPS39-201ENST00000318006 SPDYE4A6NLX3 237 aa13.5□□□□□ -0.25
VPS39-201ENST00000318006 GTF2F1P35269 517 aaKnown RBP eCLIP13.5□□□□□ -0.25
VPS39-201ENST00000318006 MAGI3Q5TCQ9 1506 aa13.5□□□□□ -0.25
VPS39-201ENST00000318006 TRIM27P14373 513 aa13.5□□□□□ -0.25
VPS39-201ENST00000318006 EPS15P42566 896 aa13.5□□□□□ -0.25
VPS39-201ENST00000318006 FAM193AP78312 1265 aa13.5□□□□□ -0.25
VPS39-201ENST00000318006 CENPHQ9H3R5 247 aa13.5□□□□□ -0.25
VPS39-201ENST00000318006 A2MP01023 1474 aa13.5□□□□□ -0.25
VPS39-201ENST00000318006 SHTN1A0MZ66 631 aa13.49□□□□□ -0.25
VPS39-201ENST00000318006 CCDC57Q2TAC2 916 aa13.49□□□□□ -0.25
VPS39-201ENST00000318006 FAM107BQ9H098 131 aa13.49□□□□□ -0.25
VPS39-201ENST00000318006 ZSCAN12O43309 604 aa13.49□□□□□ -0.25
VPS39-201ENST00000318006 NEMFO60524 1076 aa13.49□□□□□ -0.25
VPS39-201ENST00000318006 AMOTQ4VCS5 1084 aa13.49□□□□□ -0.25
VPS39-201ENST00000318006 BBXQ8WY36 941 aaPredicted RBP13.49□□□□□ -0.25
VPS39-201ENST00000318006 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.49□□□□□ -0.252e-6■■■■□ 22.8
VPS39-201ENST00000318006 PDRG1Q9NUG6 133 aa13.49□□□□□ -0.25
VPS39-201ENST00000318006 HSP90AB2PQ58FF8 381 aa13.49□□□□□ -0.25
VPS39-201ENST00000318006 C16orf45Q96MC5 204 aaPredicted RBP13.49□□□□□ -0.25
VPS39-201ENST00000318006 CRACR2AQ9BSW2 395 aa13.49□□□□□ -0.25
VPS39-201ENST00000318006 TRAPPC8Q9Y2L5 1435 aa13.49□□□□□ -0.25
VPS39-201ENST00000318006 POLR3GO15318 223 aaPredicted RBP13.48□□□□□ -0.25
VPS39-201ENST00000318006 STK3Q13188 491 aa13.48□□□□□ -0.25
VPS39-201ENST00000318006 TTC21BQ7Z4L5 1316 aa13.48□□□□□ -0.25
VPS39-201ENST00000318006 ZRSR2Q15696 482 aaKnown RBP13.48□□□□□ -0.25
VPS39-201ENST00000318006 UVSSAQ2YD98 709 aa13.48□□□□□ -0.25
VPS39-201ENST00000318006 ATP2B1P20020 1258 aa13.48□□□□□ -0.25
VPS39-201ENST00000318006 TBC1D32Q96NH3 1257 aa13.48□□□□□ -0.25
VPS39-201ENST00000318006 LUC7LQ9NQ29 371 aaKnown RBP13.48□□□□□ -0.25
VPS39-201ENST00000318006 BAG4O95429 457 aaKnown RBP13.48□□□□□ -0.25
VPS39-201ENST00000318006 BMS1Q14692 1282 aaKnown RBP13.48□□□□□ -0.25
VPS39-201ENST00000318006 BLOC1S2Q6QNY1 142 aa13.48□□□□□ -0.25
VPS39-201ENST00000318006 TXLNBQ8N3L3 684 aa13.48□□□□□ -0.25
VPS39-201ENST00000318006 KIF1BPQ96EK5 621 aa13.48□□□□□ -0.25
VPS39-201ENST00000318006 IL16Q14005 1332 aa13.47□□□□□ -0.25
VPS39-201ENST00000318006 URI1O94763 535 aaPredicted RBP13.47□□□□□ -0.25
VPS39-201ENST00000318006 USHBP1Q8N6Y0 703 aa13.47□□□□□ -0.25
VPS39-201ENST00000318006 GTPBP4Q9BZE4 634 aaKnown RBP13.47□□□□□ -0.25
VPS39-201ENST00000318006 FOXO3O43524 673 aa13.47□□□□□ -0.25
VPS39-201ENST00000318006 ARHGAP29Q52LW3 1261 aa13.47□□□□□ -0.25
VPS39-201ENST00000318006 CEP126Q9P2H0 1117 aa13.47□□□□□ -0.25
VPS39-201ENST00000318006 CLIP2Q9UDT6 1046 aa13.47□□□□□ -0.25
VPS39-201ENST00000318006 CWC27Q6UX04 472 aaKnown RBP13.47□□□□□ -0.25
VPS39-201ENST00000318006 PANK2Q9BZ23 570 aa13.47□□□□□ -0.25
VPS39-201ENST00000318006 ZNF518AQ6AHZ1 1483 aa13.47□□□□□ -0.25
VPS39-201ENST00000318006 PARD3Q8TEW0 1356 aa13.47□□□□□ -0.25
VPS39-201ENST00000318006 PLEKHH1Q9ULM0 1364 aa13.47□□□□□ -0.25
VPS39-201ENST00000318006 ADCY5O95622 1261 aa13.47□□□□□ -0.25
VPS39-201ENST00000318006 TXLNAP40222 546 aa13.47□□□□□ -0.25
VPS39-201ENST00000318006 ASXL1Q8IXJ9 1541 aa13.47□□□□□ -0.25
VPS39-201ENST00000318006 MX1P20591 662 aa13.46□□□□□ -0.25
VPS39-201ENST00000318006 CAMK4Q16566 473 aa13.46□□□□□ -0.25
VPS39-201ENST00000318006 KRT222Q8N1A0 295 aa13.46□□□□□ -0.25
VPS39-201ENST00000318006 INCENPQ9NQS7 918 aa13.46□□□□□ -0.25
VPS39-201ENST00000318006 WDR7Q9Y4E6 1490 aa13.46□□□□□ -0.25
VPS39-201ENST00000318006 GNL3LQ9NVN8 582 aaKnown RBP13.46□□□□□ -0.25
VPS39-201ENST00000318006 SHANK2Q9UPX8 1470 aa13.46□□□□□ -0.25
VPS39-201ENST00000318006 RAB11FIP3O75154 756 aa13.46□□□□□ -0.26
VPS39-201ENST00000318006 NUTM1Q86Y26 1132 aa13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms