RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 PPP6R1Q9UPN7 881 aa5.7□□□□□ -1.5
PTPN13-201ENST00000316707 ZKSCAN1P17029 563 aaPredicted RBP5.7□□□□□ -1.5
PTPN13-201ENST00000316707 CCDC171Q6TFL3 1326 aa5.7□□□□□ -1.5
PTPN13-201ENST00000316707 MINK1Q8N4C8 1332 aaPredicted RBP5.7□□□□□ -1.5
PTPN13-201ENST00000316707 RAB11FIP3O75154 756 aa5.7□□□□□ -1.5
PTPN13-201ENST00000316707 ZNF771Q7L3S4 317 aaPredicted RBP5.7□□□□□ -1.5
PTPN13-201ENST00000316707 ZNF710Q8N1W2 664 aa5.7□□□□□ -1.5
PTPN13-201ENST00000316707 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.7□□□□□ -1.5
PTPN13-201ENST00000316707 ELP1O95163 1332 aa5.7□□□□□ -1.5
PTPN13-201ENST00000316707 KRT222Q8N1A0 295 aa5.7□□□□□ -1.5
PTPN13-201ENST00000316707 NSFL1CQ9UNZ2 370 aaKnown RBP5.7□□□□□ -1.5
PTPN13-201ENST00000316707 ABCA6Q8N139 1617 aa5.7□□□□□ -1.5
PTPN13-201ENST00000316707 TRIM6-TRIM34B2RNG4 842 aa5.7□□□□□ -1.5
PTPN13-201ENST00000316707 SYT1P21579 422 aa5.7□□□□□ -1.5
PTPN13-201ENST00000316707 ATP8B2P98198 1209 aa5.7□□□□□ -1.5
PTPN13-201ENST00000316707 FOXD4L5Q5VV16 416 aaPredicted RBP5.7□□□□□ -1.5
PTPN13-201ENST00000316707 OTUD7AQ8TE49 926 aaPredicted RBP5.7□□□□□ -1.5
PTPN13-201ENST00000316707 FOXD4L4Q8WXT5 416 aaPredicted RBP5.7□□□□□ -1.5
PTPN13-201ENST00000316707 SHROOM2Q13796 1616 aa5.7□□□□□ -1.5
PTPN13-201ENST00000316707 RAD50Q92878 1312 aa5.7□□□□□ -1.5
PTPN13-201ENST00000316707 APBB1O00213 710 aa5.7□□□□□ -1.5
PTPN13-201ENST00000316707 SLFNL1Q499Z3 407 aa5.7□□□□□ -1.5
PTPN13-201ENST00000316707 NUP62CLQ9H1M0 184 aa5.7□□□□□ -1.5
PTPN13-201ENST00000316707 NPM1P06748 294 aaKnown RBP eCLIP5.69□□□□□ -1.5
PTPN13-201ENST00000316707 UPF3BQ9BZI7 483 aaKnown RBP5.69□□□□□ -1.5
PTPN13-201ENST00000316707 CALCOCO1Q9P1Z2 691 aa5.69□□□□□ -1.5
PTPN13-201ENST00000316707 CDC42BPBQ9Y5S2 1711 aa5.69□□□□□ -1.5
PTPN13-201ENST00000316707 SAFB2Q14151 953 aaKnown RBP eCLIP5.69□□□□□ -1.5
PTPN13-201ENST00000316707 C16orf71Q8IYS4 520 aaPredicted RBP5.69□□□□□ -1.5
PTPN13-201ENST00000316707 PRAM1Q96QH2 718 aa5.69□□□□□ -1.5
PTPN13-201ENST00000316707 THUMPD2Q9BTF0 503 aaKnown RBP5.69□□□□□ -1.5
PTPN13-201ENST00000316707 PRDM10Q9NQV6 1147 aa5.69□□□□□ -1.5
PTPN13-201ENST00000316707 RIOK3O14730 519 aaKnown RBP5.69□□□□□ -1.5
PTPN13-201ENST00000316707 FIBPO43427 364 aa5.69□□□□□ -1.5
PTPN13-201ENST00000316707 MEIS3Q99687 375 aa5.69□□□□□ -1.5
PTPN13-201ENST00000316707 SLC4A2P04920 1241 aa5.69□□□□□ -1.5
PTPN13-201ENST00000316707 HMOX1P09601 288 aa5.69□□□□□ -1.5
PTPN13-201ENST00000316707 ATP2B3Q16720 1220 aa5.69□□□□□ -1.5
PTPN13-201ENST00000316707 ARID3AQ99856 593 aa5.69□□□□□ -1.5
PTPN13-201ENST00000316707 RIMS2Q9UQ26 1411 aa5.69□□□□□ -1.5
PTPN13-201ENST00000316707 ZNF397Q8NF99 534 aaPredicted RBP5.69□□□□□ -1.5
PTPN13-201ENST00000316707 CDK19Q9BWU1 502 aa5.69□□□□□ -1.5
PTPN13-201ENST00000316707 STK26Q9P289 416 aa5.69□□□□□ -1.5
PTPN13-201ENST00000316707 CDC42BPGQ6DT37 1551 aa5.69□□□□□ -1.5
PTPN13-201ENST00000316707 ANKRD1Q15327 319 aa5.68□□□□□ -1.5
PTPN13-201ENST00000316707 DRC7Q8IY82 874 aa5.68□□□□□ -1.5
PTPN13-201ENST00000316707 RILPL2Q969X0 211 aa5.68□□□□□ -1.5
PTPN13-201ENST00000316707 FUCA2Q9BTY2 467 aa5.68□□□□□ -1.5
PTPN13-201ENST00000316707 TRIM5Q9C035 493 aa5.68□□□□□ -1.5
PTPN13-201ENST00000316707 DDX41Q9UJV9 622 aaKnown RBP5.68□□□□□ -1.5
PTPN13-201ENST00000316707 RPAP1Q9BWH6 1393 aaPredicted RBP5.68□□□□□ -1.5
PTPN13-201ENST00000316707 PSMA5P28066 241 aa5.68□□□□□ -1.5
PTPN13-201ENST00000316707 TDRD7Q8NHU6 1098 aaKnown RBP5.68□□□□□ -1.5
PTPN13-201ENST00000316707 BABAM1Q9NWV8 329 aa5.68□□□□□ -1.5
PTPN13-201ENST00000316707 DEPDC5O75140 1603 aa5.68□□□□□ -1.5
PTPN13-201ENST00000316707 SALL3Q9BXA9 1300 aa5.68□□□□□ -1.5
PTPN13-201ENST00000316707 SHPRHQ149N8 1683 aa5.68□□□□□ -1.5
PTPN13-201ENST00000316707 SGSM2O43147 1006 aa5.68□□□□□ -1.5
PTPN13-201ENST00000316707 GADD45BO75293 160 aaPredicted RBP5.68□□□□□ -1.5
PTPN13-201ENST00000316707 TNNT1P13805 278 aa5.68□□□□□ -1.5
PTPN13-201ENST00000316707 CNTROBQ8N137 903 aa5.68□□□□□ -1.5
PTPN13-201ENST00000316707 MRFAP1L1Q96HT8 127 aa5.68□□□□□ -1.5
PTPN13-201ENST00000316707 CYP46A1Q9Y6A2 500 aa5.68□□□□□ -1.5
PTPN13-201ENST00000316707 TULP4Q9NRJ4 1543 aa5.68□□□□□ -1.5
PTPN13-201ENST00000316707 ARHGEF10O15013 1369 aa5.68□□□□□ -1.5
PTPN13-201ENST00000316707 HIP1O00291 1037 aa5.68□□□□□ -1.5
PTPN13-201ENST00000316707 CTAGE5O15320 804 aa5.68□□□□□ -1.5
PTPN13-201ENST00000316707 ERO1AQ96HE7 468 aa5.68□□□□□ -1.5
PTPN13-201ENST00000316707 CDK12Q9NYV4 1490 aaPredicted RBP5.68□□□□□ -1.5
PTPN13-201ENST00000316707 SMARCA5O60264 1052 aaPredicted RBP5.67□□□□□ -1.5
PTPN13-201ENST00000316707 SIRT1Q96EB6 747 aa5.67□□□□□ -1.5
PTPN13-201ENST00000316707 ARGLU1Q9NWB6 273 aaPredicted RBP5.67□□□□□ -1.5
PTPN13-201ENST00000316707 EMILIN1Q9Y6C2 1016 aa5.67□□□□□ -1.5
PTPN13-201ENST00000316707 ATP7BP35670 1465 aa5.67□□□□□ -1.5
PTPN13-201ENST00000316707 MLH3Q9UHC1 1453 aa5.67□□□□□ -1.5
PTPN13-201ENST00000316707 YTHDC2Q9H6S0 1430 aaKnown RBP5.67□□□□□ -1.5
PTPN13-201ENST00000316707 IDI1Q13907 227 aa5.67□□□□□ -1.5
PTPN13-201ENST00000316707 CCDC186Q7Z3E2 898 aa5.67□□□□□ -1.5
PTPN13-201ENST00000316707 GDPD2Q9HCC8 539 aa5.67□□□□□ -1.5
PTPN13-201ENST00000316707 CEP152O94986 1710 aa5.67□□□□□ -1.5
PTPN13-201ENST00000316707 CCP110O43303 1012 aa5.67□□□□□ -1.5
PTPN13-201ENST00000316707 BMS1Q14692 1282 aaKnown RBP5.67□□□□□ -1.5
PTPN13-201ENST00000316707 VPS53Q5VIR6 699 aa5.67□□□□□ -1.5
PTPN13-201ENST00000316707 CCDC30Q5VVM6 783 aa5.67□□□□□ -1.5
PTPN13-201ENST00000316707 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.67□□□□□ -1.5
PTPN13-201ENST00000316707 MORC2Q9Y6X9 1032 aaPredicted RBP5.67□□□□□ -1.5
PTPN13-201ENST00000316707 EDC4Q6P2E9 1401 aaKnown RBP5.67□□□□□ -1.5
PTPN13-201ENST00000316707 GOLGA6L19H0YKK7 550 aa5.67□□□□□ -1.5
PTPN13-201ENST00000316707 GLRX3O76003 335 aaKnown RBP5.67□□□□□ -1.5
PTPN13-201ENST00000316707 GSDMDP57764 484 aa5.67□□□□□ -1.5
PTPN13-201ENST00000316707 FGD1P98174 961 aa5.67□□□□□ -1.5
PTPN13-201ENST00000316707 ZNF830Q96NB3 372 aaPredicted RBP5.67□□□□□ -1.5
PTPN13-201ENST00000316707 CTNNA3Q9UI47 895 aa5.67□□□□□ -1.5
PTPN13-201ENST00000316707 PALD1Q9ULE6 856 aa5.67□□□□□ -1.5
PTPN13-201ENST00000316707 CNPY2Q9Y2B0 182 aa5.67□□□□□ -1.5
PTPN13-201ENST00000316707 INO80Q9ULG1 1556 aaPredicted RBP5.67□□□□□ -1.5
PTPN13-201ENST00000316707 MYO5CQ9NQX4 1742 aa5.67□□□□□ -1.5
PTPN13-201ENST00000316707 SLC20A2Q08357 652 aa5.67□□□□□ -1.5
PTPN13-201ENST00000316707 NOL8Q76FK4 1167 aaKnown RBP5.67□□□□□ -1.5
PTPN13-201ENST00000316707 KIF18AQ8NI77 898 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms