RNA–Protein interactions for RNA: ENST00000315962.8

TRIM55-202, Transcript of tripartite motif containing 55, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM55, Length 2,914 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-202ENST00000315962 OTUD7AQ8TE49 926 aaPredicted RBP9.51□□□□□ -0.89
TRIM55-202ENST00000315962 RRAGDQ9NQL2 400 aaPredicted RBP9.51□□□□□ -0.89
TRIM55-202ENST00000315962 MFAP1P55081 439 aaKnown RBP9.5□□□□□ -0.89
TRIM55-202ENST00000315962 PROSER3Q2NL68 480 aa9.5□□□□□ -0.89
TRIM55-202ENST00000315962 TSHZ3Q63HK5 1081 aa9.5□□□□□ -0.89
TRIM55-202ENST00000315962 ARHGAP45Q92619 1136 aa9.5□□□□□ -0.89
TRIM55-202ENST00000315962 ZNF142P52746 1687 aaPredicted RBP9.5□□□□□ -0.89
TRIM55-202ENST00000315962 HDAC1Q13547 482 aaPredicted RBP9.5□□□□□ -0.89
TRIM55-202ENST00000315962 TOM1L2Q6ZVM7 507 aa9.5□□□□□ -0.89
TRIM55-202ENST00000315962 MYL6BP14649 208 aa9.49□□□□□ -0.89
TRIM55-202ENST00000315962 CCDC30Q5VVM6 783 aa9.49□□□□□ -0.89
TRIM55-202ENST00000315962 CHD1LQ86WJ1 897 aa9.49□□□□□ -0.89
TRIM55-202ENST00000315962 RNMTO43148 476 aaKnown RBP9.49□□□□□ -0.89
TRIM55-202ENST00000315962 EIF4A1P60842 406 aaKnown RBP9.49□□□□□ -0.89
TRIM55-202ENST00000315962 AKAP4Q5JQC9 854 aa9.49□□□□□ -0.89
TRIM55-202ENST00000315962 TBC1D2Q9BYX2 928 aa9.49□□□□□ -0.89
TRIM55-202ENST00000315962 EXOC6BQ9Y2D4 811 aa9.49□□□□□ -0.89
TRIM55-202ENST00000315962 BRPF1P55201 1214 aaPredicted RBP9.49□□□□□ -0.89
TRIM55-202ENST00000315962 SMC5Q8IY18 1101 aa9.49□□□□□ -0.89
TRIM55-202ENST00000315962 JARID2Q92833 1246 aaPredicted RBP9.49□□□□□ -0.89
TRIM55-202ENST00000315962 FOXD4L1Q9NU39 408 aa9.49□□□□□ -0.89
TRIM55-202ENST00000315962 NWD1Q149M9 1564 aa9.49□□□□□ -0.89
TRIM55-202ENST00000315962 PXDNQ92626 1479 aa9.48□□□□□ -0.89
TRIM55-202ENST00000315962 A0A0G2JS52 829 aa9.48□□□□□ -0.89
TRIM55-202ENST00000315962 PI4KAP2A4QPH2 592 aa9.48□□□□□ -0.89
TRIM55-202ENST00000315962 PI4KAP1Q8N8J0 262 aa9.48□□□□□ -0.89
TRIM55-202ENST00000315962 SPATA31A3Q5VYP0 1347 aa9.48□□□□□ -0.89
TRIM55-202ENST00000315962 NUCB1Q02818 461 aa9.48□□□□□ -0.89
TRIM55-202ENST00000315962 NFAT5O94916 1531 aa9.48□□□□□ -0.89
TRIM55-202ENST00000315962 EVA1CP58658 441 aa9.47□□□□□ -0.89
TRIM55-202ENST00000315962 INTS3Q68E01 1043 aaKnown RBP9.47□□□□□ -0.89
TRIM55-202ENST00000315962 LMTK3Q96Q04 1460 aa9.47□□□□□ -0.89
TRIM55-202ENST00000315962 CYP27B1O15528 508 aa9.47□□□□□ -0.89
TRIM55-202ENST00000315962 PIP4K2BP78356 416 aa9.47□□□□□ -0.89
TRIM55-202ENST00000315962 LARP1Q6PKG0 1096 aaKnown RBP9.47□□□□□ -0.89
TRIM55-202ENST00000315962 STRCP1A6NGW2 1772 aa9.47□□□□□ -0.89
TRIM55-202ENST00000315962 PNMA6EA0A0J9YXQ4 647 aa9.46□□□□□ -0.89
TRIM55-202ENST00000315962 NBPF7P0C2Y1 421 aaPredicted RBP9.46□□□□□ -0.89
TRIM55-202ENST00000315962 BECN1Q14457 450 aa9.46□□□□□ -0.89
TRIM55-202ENST00000315962 CEP85Q6P2H3 762 aa9.46□□□□□ -0.89
TRIM55-202ENST00000315962 HTATSF1O43719 755 aaKnown RBP9.46□□□□□ -0.9
TRIM55-202ENST00000315962 PTCD1O75127 700 aaKnown RBP9.46□□□□□ -0.9
TRIM55-202ENST00000315962 TATP17735 454 aaPredicted RBP9.46□□□□□ -0.9
TRIM55-202ENST00000315962 CWF19L2Q2TBE0 894 aaKnown RBP9.46□□□□□ -0.9
TRIM55-202ENST00000315962 AMOTQ4VCS5 1084 aa9.46□□□□□ -0.9
TRIM55-202ENST00000315962 ZNF330Q9Y3S2 320 aaPredicted RBP9.46□□□□□ -0.9
TRIM55-202ENST00000315962 LRRFIP2Q9Y608 721 aaKnown RBP9.46□□□□□ -0.9
TRIM55-202ENST00000315962 RGS12O14924 1447 aa9.46□□□□□ -0.9
TRIM55-202ENST00000315962 RTL1A6NKG5 1358 aa9.45□□□□□ -0.9
TRIM55-202ENST00000315962 RGPD1P0DJD0 1748 aa9.45□□□□□ -0.9
TRIM55-202ENST00000315962 MARF1Q9Y4F3 1742 aaKnown RBP9.45□□□□□ -0.9
TRIM55-202ENST00000315962 ADAMTS2O95450 1211 aa9.45□□□□□ -0.9
TRIM55-202ENST00000315962 AAMPQ13685 434 aa9.45□□□□□ -0.9
TRIM55-202ENST00000315962 LTN1O94822 1766 aa9.45□□□□□ -0.9
TRIM55-202ENST00000315962 KIF24Q5T7B8 1368 aa9.45□□□□□ -0.9
TRIM55-202ENST00000315962 PTPRCP08575 1304 aa9.45□□□□□ -0.9
TRIM55-202ENST00000315962 ZNF496Q96IT1 587 aaPredicted RBP9.45□□□□□ -0.9
TRIM55-202ENST00000315962 UPF2Q9HAU5 1272 aaKnown RBP9.45□□□□□ -0.9
TRIM55-202ENST00000315962 USP16Q9Y5T5 823 aa9.45□□□□□ -0.9
TRIM55-202ENST00000315962 RGPD2P0DJD1 1756 aa9.44□□□□□ -0.9
TRIM55-202ENST00000315962 GIGYF1O75420 1035 aaPredicted RBP9.44□□□□□ -0.9
TRIM55-202ENST00000315962 USP44Q9H0E7 712 aa9.44□□□□□ -0.9
TRIM55-202ENST00000315962 IL1RAPL2Q9NP60 686 aa9.44□□□□□ -0.9
TRIM55-202ENST00000315962 CEMIPQ8WUJ3 1361 aa9.44□□□□□ -0.9
TRIM55-202ENST00000315962 NUTM2BA6NNL0 878 aaPredicted RBP9.44□□□□□ -0.9
TRIM55-202ENST00000315962 NUTM2EB1AL46 878 aaPredicted RBP9.44□□□□□ -0.9
TRIM55-202ENST00000315962 PHKG2P15735 406 aa9.44□□□□□ -0.9
TRIM55-202ENST00000315962 ZNF790Q6PG37 636 aa9.44□□□□□ -0.9
TRIM55-202ENST00000315962 NUTM2AQ8IVF1 878 aaPredicted RBP9.44□□□□□ -0.9
TRIM55-202ENST00000315962 MED1Q15648 1581 aaPredicted RBP9.44□□□□□ -0.9
TRIM55-202ENST00000315962 ANTXR1Q9H6X2 564 aa9.43□□□□□ -0.9
TRIM55-202ENST00000315962 BTG4Q9NY30 223 aa9.43□□□□□ -0.9
TRIM55-202ENST00000315962 MAP3K2Q9Y2U5 619 aa9.43□□□□□ -0.9
TRIM55-202ENST00000315962 XRCC6P12956 609 aaKnown RBP eCLIP9.43□□□□□ -0.9
TRIM55-202ENST00000315962 TBC1D32Q96NH3 1257 aa9.43□□□□□ -0.9
TRIM55-202ENST00000315962 NAP1L5Q96NT1 182 aaPredicted RBP9.43□□□□□ -0.9
TRIM55-202ENST00000315962 MEGF6O75095 1541 aa9.42□□□□□ -0.9
TRIM55-202ENST00000315962 CABP4P57796 275 aa9.42□□□□□ -0.9
TRIM55-202ENST00000315962 ANKRD44Q8N8A2 993 aa9.42□□□□□ -0.9
TRIM55-202ENST00000315962 SYTL4Q96C24 671 aaPredicted RBP9.42□□□□□ -0.9
TRIM55-202ENST00000315962 SPG7Q9UQ90 795 aa9.42□□□□□ -0.9
TRIM55-202ENST00000315962 GNAI2P04899 355 aa9.42□□□□□ -0.9
TRIM55-202ENST00000315962 UBTFL1P0CB47 393 aaPredicted RBP9.42□□□□□ -0.9
TRIM55-202ENST00000315962 CCT4P50991 539 aaKnown RBP9.42□□□□□ -0.9
TRIM55-202ENST00000315962 IFNL2Q8IZJ0 200 aa9.42□□□□□ -0.9
TRIM55-202ENST00000315962 FAM43AQ8N2R8 423 aa9.42□□□□□ -0.9
TRIM55-202ENST00000315962 GCC1Q96CN9 775 aa9.42□□□□□ -0.9
TRIM55-202ENST00000315962 DCTPP1Q9H773 170 aa9.42□□□□□ -0.9
TRIM55-202ENST00000315962 SLC52A2Q9HAB3 445 aa9.42□□□□□ -0.9
TRIM55-202ENST00000315962 TNS3Q68CZ2 1445 aa9.42□□□□□ -0.9
TRIM55-202ENST00000315962 MAP4K4O95819 1239 aaPredicted RBP9.42□□□□□ -0.9
TRIM55-202ENST00000315962 GSPT1P15170 499 aaKnown RBP9.42□□□□□ -0.9
TRIM55-202ENST00000315962 PLEKHM2Q8IWE5 1019 aa9.41□□□□□ -0.9
TRIM55-202ENST00000315962 TTC5Q8N0Z6 440 aa9.41□□□□□ -0.9
TRIM55-202ENST00000315962 SRCIN1Q9C0H9 1055 aa9.41□□□□□ -0.9
TRIM55-202ENST00000315962 EP400Q96L91 3159 aa9.41□□□□□ -0.9
TRIM55-202ENST00000315962 VIRMAQ69YN4 1812 aaKnown RBP9.41□□□□□ -0.9
TRIM55-202ENST00000315962 ATP5J2-PTCD1G3V325 749 aa9.41□□□□□ -0.9
TRIM55-202ENST00000315962 DNAAF4Q8WXU2 420 aa9.41□□□□□ -0.9
TRIM55-202ENST00000315962 CHMP4BQ9H444 224 aaKnown RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms