RNA–Protein interactions for RNA: ENST00000312481.11

COL6A5-202, Transcript of collagen type VI alpha 5 chain, humanhuman

TSL 1 (best)

Gene COL6A5, Length 9,226 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5-202ENST00000312481 FRMPD1Q5SYB0 1578 aa10.36□□□□□ -0.75
COL6A5-202ENST00000312481 IQCDQ96DY2 449 aa10.35□□□□□ -0.75
COL6A5-202ENST00000312481 NOL7Q9UMY1 257 aaKnown RBP10.35□□□□□ -0.75
COL6A5-202ENST00000312481 ITSN1Q15811 1721 aa10.35□□□□□ -0.75
COL6A5-202ENST00000312481 RBM27Q9P2N5 1060 aaKnown RBP10.35□□□□□ -0.75
COL6A5-202ENST00000312481 ZBTB7CA1YPR0 619 aa10.35□□□□□ -0.75
COL6A5-202ENST00000312481 NT5C2P49902 561 aa10.35□□□□□ -0.75
COL6A5-202ENST00000312481 CAMSAP1Q5T5Y3 1602 aa10.35□□□□□ -0.75
COL6A5-202ENST00000312481 HMGB1P1B2RPK0 211 aaPredicted RBP10.35□□□□□ -0.75
COL6A5-202ENST00000312481 NEK4P51957 841 aa10.35□□□□□ -0.75
COL6A5-202ENST00000312481 PDZRN3Q9UPQ7 1066 aa10.35□□□□□ -0.75
COL6A5-202ENST00000312481 RRP12Q5JTH9 1297 aaKnown RBP10.35□□□□□ -0.75
COL6A5-202ENST00000312481 ZNF397Q8NF99 534 aaPredicted RBP10.35□□□□□ -0.75
COL6A5-202ENST00000312481 NUP62CLQ9H1M0 184 aa10.35□□□□□ -0.75
COL6A5-202ENST00000312481 AKAP2Q9Y2D5 859 aa10.35□□□□□ -0.75
COL6A5-202ENST00000312481 PODXL2Q9NZ53 605 aa10.34□□□□□ -0.75
COL6A5-202ENST00000312481 CCDC61Q9Y6R9 512 aa10.34□□□□□ -0.75
COL6A5-202ENST00000312481 PPFIBP1Q86W92 1011 aa10.34□□□□□ -0.75
COL6A5-202ENST00000312481 THEMISQ8N1K5 641 aaPredicted RBP10.34□□□□□ -0.75
COL6A5-202ENST00000312481 SFPQP23246 707 aaKnown RBP eCLIP10.34□□□□□ -0.75
COL6A5-202ENST00000312481 ABCA9Q8IUA7 1624 aa10.34□□□□□ -0.75
COL6A5-202ENST00000312481 YEATS2Q9ULM3 1422 aa10.34□□□□□ -0.75
COL6A5-202ENST00000312481 KIF20BQ96Q89 1820 aa10.34□□□□□ -0.75
COL6A5-202ENST00000312481 BLOC1S2Q6QNY1 142 aa10.34□□□□□ -0.75
COL6A5-202ENST00000312481 LNPKQ9C0E8 428 aa10.34□□□□□ -0.75
COL6A5-202ENST00000312481 DENND4BO75064 1496 aaPredicted RBP10.33□□□□□ -0.76
COL6A5-202ENST00000312481 EPS15P42566 896 aa10.33□□□□□ -0.76
COL6A5-202ENST00000312481 RARSP54136 660 aaKnown RBP10.33□□□□□ -0.76
COL6A5-202ENST00000312481 HOOK3Q86VS8 718 aa10.33□□□□□ -0.76
COL6A5-202ENST00000312481 SPRYD3Q8NCJ5 442 aa10.33□□□□□ -0.76
COL6A5-202ENST00000312481 TRHP20396 242 aaPredicted RBP10.33□□□□□ -0.76
COL6A5-202ENST00000312481 LRRC27Q9C0I9 530 aa10.33□□□□□ -0.76
COL6A5-202ENST00000312481 PPP1R2P41236 205 aa10.33□□□□□ -0.76
COL6A5-202ENST00000312481 CCDC178Q5BJE1 867 aa10.33□□□□□ -0.76
COL6A5-202ENST00000312481 RAPGEF4Q8WZA2 1011 aa10.33□□□□□ -0.76
COL6A5-202ENST00000312481 VSIG10Q8N0Z9 540 aa10.33□□□□□ -0.76
COL6A5-202ENST00000312481 CTAGE1Q96RT6 745 aa10.33□□□□□ -0.76
COL6A5-202ENST00000312481 RAD50Q92878 1312 aa10.33□□□□□ -0.76
COL6A5-202ENST00000312481 VPS37CA5D8V6 355 aaPredicted RBP10.33□□□□□ -0.76
COL6A5-202ENST00000312481 CSB-PGBD3P0DP91 1061 aa10.33□□□□□ -0.76
COL6A5-202ENST00000312481 RAB34Q9BZG1 259 aa10.33□□□□□ -0.76
COL6A5-202ENST00000312481 TMPOP42166 694 aaKnown RBP10.32□□□□□ -0.76
COL6A5-202ENST00000312481 TRAF1Q13077 416 aa10.32□□□□□ -0.76
COL6A5-202ENST00000312481 QRICH2Q9H0J4 1663 aa10.32□□□□□ -0.76
COL6A5-202ENST00000312481 CLUL1Q15846 466 aa10.32□□□□□ -0.76
COL6A5-202ENST00000312481 UHRF1BP1LA0JNW5 1464 aa10.32□□□□□ -0.76
COL6A5-202ENST00000312481 A2MP01023 1474 aa10.32□□□□□ -0.76
COL6A5-202ENST00000312481 VPS36Q86VN1 386 aa10.32□□□□□ -0.76
COL6A5-202ENST00000312481 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.32□□□□□ -0.76
COL6A5-202ENST00000312481 CCDC148Q8NFR7 591 aa10.32□□□□□ -0.76
COL6A5-202ENST00000312481 MYH10P35580 1976 aa10.32□□□□□ -0.76
COL6A5-202ENST00000312481 DESP17661 470 aa10.32□□□□□ -0.76
COL6A5-202ENST00000312481 PIK3R4Q99570 1358 aa10.32□□□□□ -0.76
COL6A5-202ENST00000312481 PAXIP1Q6ZW49 1069 aaPredicted RBP10.32□□□□□ -0.76
COL6A5-202ENST00000312481 HYPKQ9NX55 129 aa10.32□□□□□ -0.76
COL6A5-202ENST00000312481 CERS3Q8IU89 383 aa10.31□□□□□ -0.76
COL6A5-202ENST00000312481 CNPY4Q8N129 248 aa10.31□□□□□ -0.76
COL6A5-202ENST00000312481 STX1AQ16623 288 aa10.31□□□□□ -0.76
COL6A5-202ENST00000312481 TTC41PQ6P2S7 1318 aa10.31□□□□□ -0.76
COL6A5-202ENST00000312481 NAA15Q9BXJ9 866 aaKnown RBP10.31□□□□□ -0.76
COL6A5-202ENST00000312481 NEO1Q92859 1461 aa10.31□□□□□ -0.76
COL6A5-202ENST00000312481 RNF17Q9BXT8 1623 aaKnown RBP10.31□□□□□ -0.76
COL6A5-202ENST00000312481 GBP2P32456 591 aaPredicted RBP10.31□□□□□ -0.76
COL6A5-202ENST00000312481 CCDC57Q2TAC2 916 aa10.31□□□□□ -0.76
COL6A5-202ENST00000312481 CCDC158Q5M9N0 1113 aa10.31□□□□□ -0.76
COL6A5-202ENST00000312481 CEP128Q6ZU80 1094 aa10.31□□□□□ -0.76
COL6A5-202ENST00000312481 SMC5Q8IY18 1101 aa10.31□□□□□ -0.76
COL6A5-202ENST00000312481 LIMCH1Q9UPQ0 1083 aa10.31□□□□□ -0.76
COL6A5-202ENST00000312481 CHMP3Q9Y3E7 222 aa10.31□□□□□ -0.76
COL6A5-202ENST00000312481 MARCH6O60337 910 aa10.31□□□□□ -0.76
COL6A5-202ENST00000312481 PAK3O75914 559 aaPredicted RBP10.31□□□□□ -0.76
COL6A5-202ENST00000312481 FAM114A1Q8IWE2 563 aa10.31□□□□□ -0.76
COL6A5-202ENST00000312481 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.31□□□□□ -0.76
COL6A5-202ENST00000312481 HSP90AB3PQ58FF7 597 aa10.31□□□□□ -0.76
COL6A5-202ENST00000312481 DUSP27Q5VZP5 1158 aa10.31□□□□□ -0.76
COL6A5-202ENST00000312481 PPP1R12BO60237 982 aaPredicted RBP10.3□□□□□ -0.76
COL6A5-202ENST00000312481 STK38Q15208 465 aa10.3□□□□□ -0.76
COL6A5-202ENST00000312481 PANK1Q8TE04 598 aa10.3□□□□□ -0.76
COL6A5-202ENST00000312481 UBXN4Q92575 508 aa10.3□□□□□ -0.76
COL6A5-202ENST00000312481 H0YHG0 523 aa10.3□□□□□ -0.76
COL6A5-202ENST00000312481 SH3BGRP55822 239 aaPredicted RBP10.3□□□□□ -0.76
COL6A5-202ENST00000312481 PZPP20742 1482 aa10.3□□□□□ -0.76
COL6A5-202ENST00000312481 SPAG1Q07617 926 aa10.3□□□□□ -0.76
COL6A5-202ENST00000312481 RNF41Q9H4P4 317 aaPredicted RBP10.3□□□□□ -0.76
COL6A5-202ENST00000312481 ABCA8O94911 1581 aa10.3□□□□□ -0.76
COL6A5-202ENST00000312481 CHD1O14646 1710 aa10.3□□□□□ -0.76
COL6A5-202ENST00000312481 HOXB7P09629 217 aa10.3□□□□□ -0.76
COL6A5-202ENST00000312481 SPATA32Q96LK8 384 aa10.3□□□□□ -0.76
COL6A5-202ENST00000312481 TMCO3Q6UWJ1 677 aa10.3□□□□□ -0.76
COL6A5-202ENST00000312481 ZFYP08048 801 aaPredicted RBP10.3□□□□□ -0.76
COL6A5-202ENST00000312481 FMNL2Q96PY5 1086 aa10.3□□□□□ -0.76
COL6A5-202ENST00000312481 IQSEC3Q9UPP2 1182 aaPredicted RBP10.3□□□□□ -0.76
COL6A5-202ENST00000312481 MSH6P52701 1360 aa10.3□□□□□ -0.76
COL6A5-202ENST00000312481 TRIM21P19474 475 aaKnown RBP10.29□□□□□ -0.76
COL6A5-202ENST00000312481 LARP1BQ659C4 914 aaKnown RBP10.29□□□□□ -0.76
COL6A5-202ENST00000312481 TTF1Q15361 905 aaPredicted RBP10.29□□□□□ -0.76
COL6A5-202ENST00000312481 PTPN14Q15678 1187 aa10.29□□□□□ -0.76
COL6A5-202ENST00000312481 IFI16Q16666 785 aaKnown RBP10.29□□□□□ -0.76
COL6A5-202ENST00000312481 MAP3K4Q9Y6R4 1608 aa10.29□□□□□ -0.76
COL6A5-202ENST00000312481 TPRNQ4KMQ1 711 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms