RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 CT47B1P0C2W7 299 aaPredicted RBP9.74□□□□□ -0.85
VPS41-202ENST00000310301 AIMP1Q12904 312 aaKnown RBP9.74□□□□□ -0.85
VPS41-202ENST00000310301 SPATA31A6Q5VVP1 1343 aa9.74□□□□□ -0.85
VPS41-202ENST00000310301 MBD5Q9P267 1494 aa9.74□□□□□ -0.85
VPS41-202ENST00000310301 BRD4O60885 1362 aaPredicted RBP9.74□□□□□ -0.85
VPS41-202ENST00000310301 BTBD11A6QL63 1104 aa9.74□□□□□ -0.85
VPS41-202ENST00000310301 RBM6P78332 1123 aaKnown RBP9.74□□□□□ -0.85
VPS41-202ENST00000310301 FAM196AQ6ZSG2 479 aa9.74□□□□□ -0.85
VPS41-202ENST00000310301 FLAD1Q8NFF5 587 aa9.74□□□□□ -0.85
VPS41-202ENST00000310301 CDC45O75419 566 aa9.74□□□□□ -0.85
VPS41-202ENST00000310301 SDF4Q9BRK5 362 aa9.74□□□□□ -0.85
VPS41-202ENST00000310301 ARHGAP31Q2M1Z3 1444 aa9.73□□□□□ -0.85
VPS41-202ENST00000310301 NSD3Q9BZ95 1437 aa9.73□□□□□ -0.85
VPS41-202ENST00000310301 FAM177BA6PVY3 158 aa9.73□□□□□ -0.85
VPS41-202ENST00000310301 FCHSD2O94868 740 aa9.73□□□□□ -0.85
VPS41-202ENST00000310301 IFIT2P09913 472 aaKnown RBP9.73□□□□□ -0.85
VPS41-202ENST00000310301 FAM98CQ17RN3 349 aaKnown RBP9.73□□□□□ -0.85
VPS41-202ENST00000310301 DHX37Q8IY37 1157 aaKnown RBP9.73□□□□□ -0.85
VPS41-202ENST00000310301 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.73□□□□□ -0.85
VPS41-202ENST00000310301 PIK3C2GO75747 1445 aa9.73□□□□□ -0.85
VPS41-202ENST00000310301 KIF7Q2M1P5 1343 aa9.72□□□□□ -0.85
VPS41-202ENST00000310301 CCDC7Q96M83 1385 aa9.72□□□□□ -0.85
VPS41-202ENST00000310301 USP8P40818 1118 aa9.72□□□□□ -0.85
VPS41-202ENST00000310301 PANK1Q8TE04 598 aa9.72□□□□□ -0.85
VPS41-202ENST00000310301 PTCD1O75127 700 aaKnown RBP9.72□□□□□ -0.85
VPS41-202ENST00000310301 KDM5CP41229 1560 aa9.72□□□□□ -0.85
VPS41-202ENST00000310301 KDM4FA0A1W2PPD8 638 aa9.72□□□□□ -0.85
VPS41-202ENST00000310301 ST5P78524 1137 aa9.72□□□□□ -0.85
VPS41-202ENST00000310301 AEBP1Q8IUX7 1158 aa9.72□□□□□ -0.85
VPS41-202ENST00000310301 PDCL2Q8N4E4 241 aa9.72□□□□□ -0.85
VPS41-202ENST00000310301 FMNL2Q96PY5 1086 aa9.72□□□□□ -0.85
VPS41-202ENST00000310301 AGLP35573 1532 aa9.72□□□□□ -0.85
VPS41-202ENST00000310301 PARP3Q9Y6F1 533 aa9.72□□□□□ -0.85
VPS41-202ENST00000310301 CBX1P83916 185 aa9.71□□□□□ -0.85
VPS41-202ENST00000310301 NFXL1Q6ZNB6 911 aa9.71□□□□□ -0.85
VPS41-202ENST00000310301 GNL3LQ9NVN8 582 aaKnown RBP9.71□□□□□ -0.85
VPS41-202ENST00000310301 HSP90AB2PQ58FF8 381 aa9.71□□□□□ -0.85
VPS41-202ENST00000310301 BICDL1Q6ZP65 573 aa9.71□□□□□ -0.85
VPS41-202ENST00000310301 CT47A1Q5JQC4 288 aaPredicted RBP9.71□□□□□ -0.86
VPS41-202ENST00000310301 UBE2Q2Q8WVN8 375 aa9.71□□□□□ -0.86
VPS41-202ENST00000310301 MYO6Q9UM54 1294 aa9.71□□□□□ -0.86
VPS41-202ENST00000310301 HSP90AB4PQ58FF6 505 aa9.71□□□□□ -0.86
VPS41-202ENST00000310301 KRT27Q7Z3Y8 459 aa9.71□□□□□ -0.86
VPS41-202ENST00000310301 NECTIN2Q92692 538 aa9.71□□□□□ -0.86
VPS41-202ENST00000310301 RPGRQ92834 1020 aaKnown RBP9.71□□□□□ -0.86
VPS41-202ENST00000310301 RTCBQ9Y3I0 505 aaKnown RBP9.7□□□□□ -0.86
VPS41-202ENST00000310301 ARHGEF40Q8TER5 1519 aa9.7□□□□□ -0.86
VPS41-202ENST00000310301 EIF3JO75822 258 aaKnown RBP9.7□□□□□ -0.86
VPS41-202ENST00000310301 TRDNQ13061 729 aa9.7□□□□□ -0.86
VPS41-202ENST00000310301 HDGFL1Q5TGJ6 251 aa9.7□□□□□ -0.86
VPS41-202ENST00000310301 PCDH11XQ9BZA7 1347 aa9.7□□□□□ -0.86
VPS41-202ENST00000310301 PCDH11YQ9BZA8 1340 aa9.7□□□□□ -0.86
VPS41-202ENST00000310301 ACSBG1Q96GR2 724 aa9.7□□□□□ -0.86
VPS41-202ENST00000310301 SMARCE1Q969G3 411 aa9.7□□□□□ -0.86
VPS41-202ENST00000310301 G3BP1Q13283 466 aaKnown RBP eCLIP9.69□□□□□ -0.86
VPS41-202ENST00000310301 SAFBQ15424 915 aaKnown RBP eCLIP9.69□□□□□ -0.86
VPS41-202ENST00000310301 KINO60870 393 aaKnown RBP9.69□□□□□ -0.86
VPS41-202ENST00000310301 UNC5CLQ8IV45 518 aa9.69□□□□□ -0.86
VPS41-202ENST00000310301 OFD1O75665 1012 aa9.69□□□□□ -0.86
VPS41-202ENST00000310301 BACH2Q9BYV9 841 aa9.69□□□□□ -0.86
VPS41-202ENST00000310301 CENPHQ9H3R5 247 aa9.69□□□□□ -0.86
VPS41-202ENST00000310301 FIBPO43427 364 aa9.69□□□□□ -0.86
VPS41-202ENST00000310301 ERLIN1O75477 346 aa9.69□□□□□ -0.86
VPS41-202ENST00000310301 HSPA1LP34931 641 aa9.69□□□□□ -0.86
VPS41-202ENST00000310301 GOLGA6L7A0A1B0GV03 622 aa9.69□□□□□ -0.86
VPS41-202ENST00000310301 GOLGA6L10A6NI86 522 aa9.69□□□□□ -0.86
VPS41-202ENST00000310301 ATP6V1AP38606 617 aa9.69□□□□□ -0.86
VPS41-202ENST00000310301 AAMPQ13685 434 aa9.69□□□□□ -0.86
VPS41-202ENST00000310301 GIMAP7Q8NHV1 300 aa9.69□□□□□ -0.86
VPS41-202ENST00000310301 ANKRD36BQ8N2N9 1353 aa9.68□□□□□ -0.86
VPS41-202ENST00000310301 ODF2Q5BJF6 829 aa9.68□□□□□ -0.86
VPS41-202ENST00000310301 MPHOSPH8Q99549 860 aa9.68□□□□□ -0.86
VPS41-202ENST00000310301 CCDC192P0DO97 292 aa9.68□□□□□ -0.86
VPS41-202ENST00000310301 ZRSR2Q15696 482 aaKnown RBP9.68□□□□□ -0.86
VPS41-202ENST00000310301 CCAR1Q8IX12 1150 aaKnown RBP9.68□□□□□ -0.86
VPS41-202ENST00000310301 TMOD2Q9NZR1 351 aa9.68□□□□□ -0.86
VPS41-202ENST00000310301 AFF2P51816 1311 aa9.68□□□□□ -0.86
VPS41-202ENST00000310301 PPP2R1AP30153 589 aa9.68□□□□□ -0.86
VPS41-202ENST00000310301 EPS15P42566 896 aa9.68□□□□□ -0.86
VPS41-202ENST00000310301 NEK4P51957 841 aa9.68□□□□□ -0.86
VPS41-202ENST00000310301 IP6K1Q92551 441 aa9.68□□□□□ -0.86
VPS41-202ENST00000310301 BRPF1P55201 1214 aaPredicted RBP9.67□□□□□ -0.86
VPS41-202ENST00000310301 FILIP1LQ4L180 1135 aa9.67□□□□□ -0.86
VPS41-202ENST00000310301 ZSCAN30Q86W11 494 aa9.67□□□□□ -0.86
VPS41-202ENST00000310301 FAM177A1Q8N128 213 aaPredicted RBP9.67□□□□□ -0.86
VPS41-202ENST00000310301 FAM193AP78312 1265 aa9.67□□□□□ -0.86
VPS41-202ENST00000310301 CCNL1Q9UK58 526 aaPredicted RBP9.67□□□□□ -0.86
VPS41-202ENST00000310301 PLEKHG3A1L390 1219 aa9.67□□□□□ -0.86
VPS41-202ENST00000310301 USHBP1Q8N6Y0 703 aa9.67□□□□□ -0.86
VPS41-202ENST00000310301 ZMYND15Q9H091 742 aa9.67□□□□□ -0.86
VPS41-202ENST00000310301 ABCC3O15438 1527 aa9.67□□□□□ -0.86
VPS41-202ENST00000310301 FLT4P35916 1363 aa9.67□□□□□ -0.86
VPS41-202ENST00000310301 EIF2AK4Q9P2K8 1649 aaKnown RBP9.67□□□□□ -0.86
VPS41-202ENST00000310301 IGHMBP2P38935 993 aaKnown RBP9.67□□□□□ -0.86
VPS41-202ENST00000310301 RABEP1Q15276 862 aa9.67□□□□□ -0.86
VPS41-202ENST00000310301 PDZRN3Q9UPQ7 1066 aa9.67□□□□□ -0.86
VPS41-202ENST00000310301 ERICH2A1L162 156 aa9.67□□□□□ -0.86
VPS41-202ENST00000310301 TAF7Q15545 349 aaPredicted RBP9.67□□□□□ -0.86
VPS41-202ENST00000310301 PPP1R42Q7Z4L9 355 aa9.67□□□□□ -0.86
VPS41-202ENST00000310301 PDCL3Q9H2J4 239 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms