RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 MCM3P25205 808 aa20.3■□□□□ 0.84
SYNPO-201ENST00000307662 NFE2L2Q16236 605 aa20.3■□□□□ 0.84
SYNPO-201ENST00000307662 UVSSAQ2YD98 709 aa20.3■□□□□ 0.84
SYNPO-201ENST00000307662 NUTM1Q86Y26 1132 aa20.3■□□□□ 0.84
SYNPO-201ENST00000307662 EXOC6BQ9Y2D4 811 aa20.3■□□□□ 0.84
SYNPO-201ENST00000307662 ABCC5O15440 1437 aa20.29■□□□□ 0.84
SYNPO-201ENST00000307662 PTPN23Q9H3S7 1636 aa20.29■□□□□ 0.84
SYNPO-201ENST00000307662 POLR3GO15318 223 aaPredicted RBP20.29■□□□□ 0.84
SYNPO-201ENST00000307662 CTAGE5O15320 804 aa20.29■□□□□ 0.84
SYNPO-201ENST00000307662 JAKMIP3Q5VZ66 844 aa20.29■□□□□ 0.84
SYNPO-201ENST00000307662 EIF5P55010 431 aaKnown RBP20.29■□□□□ 0.84
SYNPO-201ENST00000307662 CNNM1Q9NRU3 951 aa20.29■□□□□ 0.84
SYNPO-201ENST00000307662 NUP133Q8WUM0 1156 aa20.28■□□□□ 0.84
SYNPO-201ENST00000307662 RTEL1-TNFRSF6BF6WH68 1400 aa20.28■□□□□ 0.84
SYNPO-201ENST00000307662 SSH1Q8WYL5 1049 aa20.28■□□□□ 0.84
SYNPO-201ENST00000307662 WASF1Q92558 559 aa20.28■□□□□ 0.84
SYNPO-201ENST00000307662 CUL7Q14999 1698 aa20.28■□□□□ 0.84
SYNPO-201ENST00000307662 TAF4BQ92750 862 aa20.28■□□□□ 0.84
SYNPO-201ENST00000307662 MAGI1Q96QZ7 1491 aaPredicted RBP20.28■□□□□ 0.84
SYNPO-201ENST00000307662 TOP1P11387 765 aaKnown RBP20.28■□□□□ 0.84
SYNPO-201ENST00000307662 SAMD1Q6SPF0 538 aaPredicted RBP20.28■□□□□ 0.84
SYNPO-201ENST00000307662 KIF6Q6ZMV9 814 aa20.28■□□□□ 0.84
SYNPO-201ENST00000307662 PRPF40BQ6NWY9 871 aaKnown RBP20.27■□□□□ 0.84
SYNPO-201ENST00000307662 CAMSAP2Q08AD1 1489 aa20.27■□□□□ 0.84
SYNPO-201ENST00000307662 ANKRD18AQ8IVF6 992 aa20.27■□□□□ 0.84
SYNPO-201ENST00000307662 SMARCA5O60264 1052 aaPredicted RBP20.27■□□□□ 0.84
SYNPO-201ENST00000307662 GSDMDP57764 484 aa20.27■□□□□ 0.83
SYNPO-201ENST00000307662 CCDC57Q2TAC2 916 aa20.27■□□□□ 0.83
SYNPO-201ENST00000307662 KIF4BQ2VIQ3 1234 aa20.27■□□□□ 0.83
SYNPO-201ENST00000307662 DDX19AQ9NUU7 478 aaKnown RBP20.27■□□□□ 0.83
SYNPO-201ENST00000307662 C11orf95C9JLR9 678 aaPredicted RBP20.26■□□□□ 0.83
SYNPO-201ENST00000307662 GTF2F1P35269 517 aaKnown RBP eCLIP20.26■□□□□ 0.83
SYNPO-201ENST00000307662 FAM107BQ9H098 131 aa20.26■□□□□ 0.83
SYNPO-201ENST00000307662 RAB11FIP3O75154 756 aa20.26■□□□□ 0.83
SYNPO-201ENST00000307662 IKQ13123 557 aaPredicted RBP20.26■□□□□ 0.83
SYNPO-201ENST00000307662 TRMT1Q9NXH9 659 aaKnown RBP20.26■□□□□ 0.83
SYNPO-201ENST00000307662 DHX29Q7Z478 1369 aaKnown RBP20.26■□□□□ 0.83
SYNPO-201ENST00000307662 GLRX3O76003 335 aaKnown RBP20.26■□□□□ 0.83
SYNPO-201ENST00000307662 DHX37Q8IY37 1157 aaKnown RBP20.26■□□□□ 0.83
SYNPO-201ENST00000307662 KIF1BPQ96EK5 621 aa20.26■□□□□ 0.83
SYNPO-201ENST00000307662 CEP131Q9UPN4 1083 aa20.26■□□□□ 0.83
SYNPO-201ENST00000307662 SPDYE4A6NLX3 237 aa20.26■□□□□ 0.83
SYNPO-201ENST00000307662 ZSCAN23Q3MJ62 389 aa20.26■□□□□ 0.83
SYNPO-201ENST00000307662 ARHGEF11O15085 1522 aa20.25■□□□□ 0.83
SYNPO-201ENST00000307662 NSD3Q9BZ95 1437 aa20.25■□□□□ 0.83
SYNPO-201ENST00000307662 LIMCH1Q9UPQ0 1083 aa20.25■□□□□ 0.83
SYNPO-201ENST00000307662 CKAP2LQ8IYA6 745 aa20.25■□□□□ 0.83
SYNPO-201ENST00000307662 ZNF397Q8NF99 534 aaPredicted RBP20.25■□□□□ 0.83
SYNPO-201ENST00000307662 TRERF1Q96PN7 1200 aa20.25■□□□□ 0.83
SYNPO-201ENST00000307662 XRCC6P12956 609 aaKnown RBP eCLIP20.25■□□□□ 0.83
SYNPO-201ENST00000307662 ESCO1Q5FWF5 840 aa20.25■□□□□ 0.83
SYNPO-201ENST00000307662 IMMTQ16891 758 aaKnown RBP20.24■□□□□ 0.83
SYNPO-201ENST00000307662 FKBP4Q02790 459 aaKnown RBP eCLIP20.24■□□□□ 0.83
SYNPO-201ENST00000307662 BMS1Q14692 1282 aaKnown RBP20.24■□□□□ 0.83
SYNPO-201ENST00000307662 GNL3LQ9NVN8 582 aaKnown RBP20.24■□□□□ 0.83
SYNPO-201ENST00000307662 PAXBP1Q9Y5B6 917 aa20.24■□□□□ 0.83
SYNPO-201ENST00000307662 POTEB2H3BUK9 544 aa20.24■□□□□ 0.83
SYNPO-201ENST00000307662 ABCC11Q96J66 1382 aa20.24■□□□□ 0.83
SYNPO-201ENST00000307662 ANKRD62A6NC57 917 aa20.23■□□□□ 0.83
SYNPO-201ENST00000307662 DUSP27Q5VZP5 1158 aa20.23■□□□□ 0.83
SYNPO-201ENST00000307662 BMP2KLQ5H9B9 411 aa20.23■□□□□ 0.83
SYNPO-201ENST00000307662 RBM27Q9P2N5 1060 aaKnown RBP20.23■□□□□ 0.83
SYNPO-201ENST00000307662 ZHX3Q9H4I2 956 aa20.23■□□□□ 0.83
SYNPO-201ENST00000307662 LRSAM1Q6UWE0 723 aa20.23■□□□□ 0.83
SYNPO-201ENST00000307662 THEMISQ8N1K5 641 aaPredicted RBP20.23■□□□□ 0.83
SYNPO-201ENST00000307662 SPA17Q15506 151 aa20.22■□□□□ 0.83
SYNPO-201ENST00000307662 TBC1D9Q6ZT07 1266 aa20.22■□□□□ 0.83
SYNPO-201ENST00000307662 RAPGEF3O95398 923 aa20.22■□□□□ 0.83
SYNPO-201ENST00000307662 SOGA3Q5TF21 947 aa20.21■□□□□ 0.83
SYNPO-201ENST00000307662 GDPD2Q9HCC8 539 aa20.21■□□□□ 0.83
SYNPO-201ENST00000307662 CEP135Q66GS9 1140 aa20.21■□□□□ 0.83
SYNPO-201ENST00000307662 UBAC1Q9BSL1 405 aa20.21■□□□□ 0.83
SYNPO-201ENST00000307662 MICALCLQ6ZW33 695 aa20.21■□□□□ 0.83
SYNPO-201ENST00000307662 BMP2KQ9NSY1 1161 aaPredicted RBP20.21■□□□□ 0.83
SYNPO-201ENST00000307662 SNW1Q13573 536 aaKnown RBP20.2■□□□□ 0.82
SYNPO-201ENST00000307662 NCOA1Q15788 1441 aa20.2■□□□□ 0.82
SYNPO-201ENST00000307662 STX1AQ16623 288 aa20.2■□□□□ 0.82
SYNPO-201ENST00000307662 TIGD1Q96MW7 591 aa20.2■□□□□ 0.82
SYNPO-201ENST00000307662 U3KPZ7 1027 aaPredicted RBP20.2■□□□□ 0.82
SYNPO-201ENST00000307662 IGHDP01880 384 aa20.19■□□□□ 0.82
SYNPO-201ENST00000307662 LAMC3Q9Y6N6 1575 aa20.19■□□□□ 0.82
SYNPO-201ENST00000307662 UBE2HP62256 183 aa20.19■□□□□ 0.82
SYNPO-201ENST00000307662 STX6O43752 255 aa20.19■□□□□ 0.82
SYNPO-201ENST00000307662 ZNF530Q6P9A1 599 aaPredicted RBP20.19■□□□□ 0.82
SYNPO-201ENST00000307662 KRT222Q8N1A0 295 aa20.18■□□□□ 0.82
SYNPO-201ENST00000307662 GOLGA6L9A6NEM1 432 aa20.18■□□□□ 0.82
SYNPO-201ENST00000307662 FAM177BA6PVY3 158 aa20.18■□□□□ 0.82
SYNPO-201ENST00000307662 TMC6Q7Z403 805 aa20.18■□□□□ 0.82
SYNPO-201ENST00000307662 SMARCC1Q92922 1105 aaPredicted RBP20.18■□□□□ 0.82
SYNPO-201ENST00000307662 CAVIN2O95810 425 aa20.18■□□□□ 0.82
SYNPO-201ENST00000307662 EZRP15311 586 aaKnown RBP20.18■□□□□ 0.82
SYNPO-201ENST00000307662 SEPT11Q9NVA2 429 aaKnown RBP20.18■□□□□ 0.82
SYNPO-201ENST00000307662 TRIM27P14373 513 aa20.17■□□□□ 0.82
SYNPO-201ENST00000307662 CEP126Q9P2H0 1117 aa20.17■□□□□ 0.82
SYNPO-201ENST00000307662 TATP17735 454 aaPredicted RBP20.17■□□□□ 0.82
SYNPO-201ENST00000307662 SLC26A8Q96RN1 970 aa20.17■□□□□ 0.82
SYNPO-201ENST00000307662 PLB1Q6P1J6 1458 aa20.17■□□□□ 0.82
SYNPO-201ENST00000307662 MYL6BP14649 208 aa20.17■□□□□ 0.82
SYNPO-201ENST00000307662 TDO2P48775 406 aa20.17■□□□□ 0.82
SYNPO-201ENST00000307662 BICRAQ9NZM4 1560 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms