RNA–Protein interactions for RNA: ENST00000304494.9

CDKN2A-201, Transcript of cyclin dependent kinase inhibitor 2A, humanhuman

TSL 1 (best) BASIC

Gene CDKN2A, Length 1,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN2A-201ENST00000304494 COL23A1Q86Y22 540 aaPredicted RBP35.51■■■■□ 3.28
CDKN2A-201ENST00000304494 ARXQ96QS3 562 aa35.51■■■■□ 3.28
CDKN2A-201ENST00000304494 POLD1P28340 1107 aa35.5■■■■□ 3.27
CDKN2A-201ENST00000304494 MTHFSDQ2M296 383 aaKnown RBP35.49■■■■□ 3.27
CDKN2A-201ENST00000304494 NFATC2IPQ8NCF5 419 aa35.49■■■■□ 3.27
CDKN2A-201ENST00000304494 NUDCQ9Y266 331 aa35.49■■■■□ 3.27
CDKN2A-201ENST00000304494 LINC00116Q8NCU8 138 aa35.48■■■■□ 3.27
CDKN2A-201ENST00000304494 SCN11AQ9UI33 1791 aa35.47■■■■□ 3.27
CDKN2A-201ENST00000304494 RBM42Q9BTD8 480 aaKnown RBP35.47■■■■□ 3.27
CDKN2A-201ENST00000304494 ITPK1Q13572 414 aa35.46■■■■□ 3.27
CDKN2A-201ENST00000304494 ZNF831Q5JPB2 1677 aa35.46■■■■□ 3.27
CDKN2A-201ENST00000304494 COL24A1Q17RW2 1714 aa35.46■■■■□ 3.27
CDKN2A-201ENST00000304494 FHDC1Q9C0D6 1143 aaPredicted RBP35.45■■■■□ 3.27
CDKN2A-201ENST00000304494 DCAF8L1A6NGE4 600 aa35.43■■■■□ 3.26
CDKN2A-201ENST00000304494 SLC52A2Q9HAB3 445 aa35.43■■■■□ 3.26
CDKN2A-201ENST00000304494 RNMTO43148 476 aaKnown RBP35.42■■■■□ 3.26
CDKN2A-201ENST00000304494 SSFA2P28290 1259 aa35.42■■■■□ 3.26
CDKN2A-201ENST00000304494 GAS2L2Q8NHY3 880 aa35.42■■■■□ 3.26
CDKN2A-201ENST00000304494 LGR6Q9HBX8 967 aa35.42■■■■□ 3.26
CDKN2A-201ENST00000304494 SYT17Q9BSW7 474 aa35.41■■■■□ 3.26
CDKN2A-201ENST00000304494 MRC1P22897 1456 aa35.41■■■■□ 3.26
CDKN2A-201ENST00000304494 UBR3Q6ZT12 1888 aa35.4■■■■□ 3.26
CDKN2A-201ENST00000304494 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP35.4■■■■□ 3.26
CDKN2A-201ENST00000304494 PHF14O94880 888 aa35.4■■■■□ 3.26
CDKN2A-201ENST00000304494 MAP3K5Q99683 1374 aa35.39■■■■□ 3.26
CDKN2A-201ENST00000304494 GNPATO15228 680 aa35.39■■■■□ 3.26
CDKN2A-201ENST00000304494 SLC4A9Q96Q91 983 aa35.39■■■■□ 3.26
CDKN2A-201ENST00000304494 ADAMTS7Q9UKP4 1686 aa35.37■■■■□ 3.25
CDKN2A-201ENST00000304494 PTCD1O75127 700 aaKnown RBP35.37■■■■□ 3.25
CDKN2A-201ENST00000304494 U2AF1L5P0DN76 240 aaPredicted RBP35.37■■■■□ 3.25
CDKN2A-201ENST00000304494 U2AF1Q01081 240 aaKnown RBP eCLIP35.37■■■■□ 3.25
CDKN2A-201ENST00000304494 AMIGO3Q86WK7 504 aa35.37■■■■□ 3.25
CDKN2A-201ENST00000304494 RSPH6AQ9H0K4 717 aa35.37■■■■□ 3.25
CDKN2A-201ENST00000304494 PRKAR2BP31323 418 aa35.36■■■■□ 3.25
CDKN2A-201ENST00000304494 GNAT3A8MTJ3 354 aa35.34■■■■□ 3.25
CDKN2A-201ENST00000304494 RC3H1Q5TC82 1133 aaKnown RBP35.34■■■■□ 3.25
CDKN2A-201ENST00000304494 MSL1Q68DK7 614 aa35.34■■■■□ 3.25
CDKN2A-201ENST00000304494 CNTNAP4Q9C0A0 1308 aa35.33■■■■□ 3.25
CDKN2A-201ENST00000304494 COL5A3P25940 1745 aaPredicted RBP35.32■■■■□ 3.25
CDKN2A-201ENST00000304494 FCHSD2O94868 740 aa35.32■■■■□ 3.24
CDKN2A-201ENST00000304494 RTCBQ9Y3I0 505 aaKnown RBP35.32■■■■□ 3.24
CDKN2A-201ENST00000304494 VIRMAQ69YN4 1812 aaKnown RBP35.32■■■■□ 3.24
CDKN2A-201ENST00000304494 DDX10Q13206 875 aaKnown RBP35.31■■■■□ 3.24
CDKN2A-201ENST00000304494 SMIM5Q71RC9 77 aa35.3■■■■□ 3.24
CDKN2A-201ENST00000304494 KLHL34Q8N239 644 aa35.29■■■■□ 3.24
CDKN2A-201ENST00000304494 PHACTR3Q96KR7 559 aa35.29■■■■□ 3.24
CDKN2A-201ENST00000304494 CICQ96RK0 1608 aaPredicted RBP35.28■■■■□ 3.24
CDKN2A-201ENST00000304494 ADRA2BP18089 450 aa35.27■■■■□ 3.24
CDKN2A-201ENST00000304494 ZEB1P37275 1124 aaPredicted RBP35.27■■■■□ 3.24
CDKN2A-201ENST00000304494 RALBP1Q15311 655 aa35.27■■■■□ 3.24
CDKN2A-201ENST00000304494 TRAPPC3LQ5T215 181 aa35.27■■■■□ 3.24
CDKN2A-201ENST00000304494 TEFQ10587 303 aa35.26■■■■□ 3.24
CDKN2A-201ENST00000304494 RPS6KA4O75676 772 aa35.25■■■■□ 3.23
CDKN2A-201ENST00000304494 SLC39A6Q13433 755 aa35.25■■■■□ 3.23
CDKN2A-201ENST00000304494 IL17REQ8NFR9 667 aa35.25■■■■□ 3.23
CDKN2A-201ENST00000304494 TJP1Q07157 1748 aa35.23■■■■□ 3.23
CDKN2A-201ENST00000304494 CRKLP46109 303 aaKnown RBP35.23■■■■□ 3.23
CDKN2A-201ENST00000304494 TTC5Q8N0Z6 440 aa35.21■■■■□ 3.23
CDKN2A-201ENST00000304494 CEMIPQ8WUJ3 1361 aa35.21■■■■□ 3.23
CDKN2A-201ENST00000304494 KCPQ6ZWJ8 1503 aa35.21■■■■□ 3.23
CDKN2A-201ENST00000304494 VSIG10Q8N0Z9 540 aa35.2■■■■□ 3.23
CDKN2A-201ENST00000304494 NEFMP07197 916 aa35.19■■■■□ 3.22
CDKN2A-201ENST00000304494 ARHGEF1Q92888 912 aaKnown RBP35.19■■■■□ 3.22
CDKN2A-201ENST00000304494 RFC4P35249 363 aa35.18■■■■□ 3.22
CDKN2A-201ENST00000304494 DNAJC10Q8IXB1 793 aa35.18■■■■□ 3.22
CDKN2A-201ENST00000304494 RTF1Q92541 710 aaKnown RBP35.18■■■■□ 3.22
CDKN2A-201ENST00000304494 CD2APQ9Y5K6 639 aa35.16■■■■□ 3.22
CDKN2A-201ENST00000304494 MYH14Q7Z406 1995 aaKnown RBP35.16■■■■□ 3.22
CDKN2A-201ENST00000304494 UBR2Q8IWV8 1755 aa35.15■■■■□ 3.22
CDKN2A-201ENST00000304494 NLGN1Q8N2Q7 840 aa35.15■■■■□ 3.22
CDKN2A-201ENST00000304494 INTS5Q6P9B9 1019 aaKnown RBP35.14■■■■□ 3.22
CDKN2A-201ENST00000304494 ZNF790Q6PG37 636 aa35.14■■■■□ 3.22
CDKN2A-201ENST00000304494 NLGN2Q8NFZ4 835 aa35.14■■■■□ 3.22
CDKN2A-201ENST00000304494 PNNQ9H307 717 aaKnown RBP35.14■■■■□ 3.22
CDKN2A-201ENST00000304494 CCDC87Q9NVE4 849 aa35.14■■■■□ 3.22
CDKN2A-201ENST00000304494 SIPA1L3O60292 1781 aaPredicted RBP35.14■■■■□ 3.22
CDKN2A-201ENST00000304494 HTATSF1O43719 755 aaKnown RBP35.13■■■■□ 3.21
CDKN2A-201ENST00000304494 CYP19A1P11511 503 aaPredicted RBP35.13■■■■□ 3.21
CDKN2A-201ENST00000304494 MYBBP1AQ9BQG0 1328 aaKnown RBP35.12■■■■□ 3.21
CDKN2A-201ENST00000304494 GPR162Q16538 588 aa35.11■■■■□ 3.21
CDKN2A-201ENST00000304494 C4AP0C0L4 1744 aa35.09■■■■□ 3.21
CDKN2A-201ENST00000304494 BTBD11A6QL63 1104 aa35.09■■■■□ 3.21
CDKN2A-201ENST00000304494 MMP10P09238 476 aa35.09■■■■□ 3.21
CDKN2A-201ENST00000304494 GYS1P13807 737 aa35.09■■■■□ 3.21
CDKN2A-201ENST00000304494 YY1P25490 414 aa35.09■■■■□ 3.21
CDKN2A-201ENST00000304494 UTRNP46939 3433 aa35.09■■■■□ 3.21
CDKN2A-201ENST00000304494 MCM10Q7L590 875 aa35.08■■■■□ 3.21
CDKN2A-201ENST00000304494 STARD3NLO95772 234 aa35.07■■■■□ 3.2
CDKN2A-201ENST00000304494 ZNF496Q96IT1 587 aaPredicted RBP35.07■■■■□ 3.2
CDKN2A-201ENST00000304494 FMNL2Q96PY5 1086 aa35.07■■■■□ 3.2
CDKN2A-201ENST00000304494 PLEKHF1Q96S99 279 aa35.07■■■■□ 3.2
CDKN2A-201ENST00000304494 TEX13AQ9BXU3 409 aaPredicted RBP35.07■■■■□ 3.2
CDKN2A-201ENST00000304494 HEG1Q9ULI3 1381 aa35.07■■■■□ 3.2
CDKN2A-201ENST00000304494 SOS1Q07889 1333 aaPredicted RBP35.06■■■■□ 3.2
CDKN2A-201ENST00000304494 USP42Q9H9J4 1324 aaKnown RBP35.06■■■■□ 3.2
CDKN2A-201ENST00000304494 PELP1Q8IZL8 1130 aaKnown RBP35.05■■■■□ 3.2
CDKN2A-201ENST00000304494 MAPK8IP3Q9UPT6 1336 aa35.05■■■■□ 3.2
CDKN2A-201ENST00000304494 ZBTB1Q9Y2K1 713 aa35.02■■■■□ 3.2
CDKN2A-201ENST00000304494 ZPR1O75312 459 aa35.01■■■■□ 3.2
CDKN2A-201ENST00000304494 DCTN1Q14203 1278 aa35.01■■■■□ 3.2
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms