RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 EIF4A2Q14240 407 aaKnown RBP20.35■□□□□ 0.85
CCDC88B-201ENST00000301897 ATG3Q9NT62 314 aa20.35■□□□□ 0.85
CCDC88B-201ENST00000301897 RTCBQ9Y3I0 505 aaKnown RBP20.35■□□□□ 0.85
CCDC88B-201ENST00000301897 ADRA2BP18089 450 aa20.34■□□□□ 0.85
CCDC88B-201ENST00000301897 SMIM5Q71RC9 77 aa20.34■□□□□ 0.85
CCDC88B-201ENST00000301897 NLGN1Q8N2Q7 840 aa20.34■□□□□ 0.85
CCDC88B-201ENST00000301897 DCAF5Q96JK2 942 aa20.34■□□□□ 0.85
CCDC88B-201ENST00000301897 CLSPNQ9HAW4 1339 aa20.33■□□□□ 0.85
CCDC88B-201ENST00000301897 KIF13BQ9NQT8 1826 aa20.33■□□□□ 0.85
CCDC88B-201ENST00000301897 MMP10P09238 476 aa20.33■□□□□ 0.85
CCDC88B-201ENST00000301897 TRAPPC3LQ5T215 181 aa20.33■□□□□ 0.85
CCDC88B-201ENST00000301897 RC3H1Q5TC82 1133 aaKnown RBP20.33■□□□□ 0.85
CCDC88B-201ENST00000301897 KDRP35968 1356 aa20.33■□□□□ 0.84
CCDC88B-201ENST00000301897 CICQ96RK0 1608 aaPredicted RBP20.32■□□□□ 0.84
CCDC88B-201ENST00000301897 HSPA6P17066 643 aa20.32■□□□□ 0.84
CCDC88B-201ENST00000301897 TGFB2P61812 414 aa20.32■□□□□ 0.84
CCDC88B-201ENST00000301897 TNNT2P45379 298 aaPredicted RBP20.31■□□□□ 0.84
CCDC88B-201ENST00000301897 AMOTQ4VCS5 1084 aa20.31■□□□□ 0.84
CCDC88B-201ENST00000301897 PLEKHO1Q53GL0 409 aaPredicted RBP20.31■□□□□ 0.84
CCDC88B-201ENST00000301897 ZNF526Q8TF50 670 aaPredicted RBP20.31■□□□□ 0.84
CCDC88B-201ENST00000301897 POLR3GLQ9BT43 218 aa20.3■□□□□ 0.84
CCDC88B-201ENST00000301897 RBM42Q9BTD8 480 aaKnown RBP20.3■□□□□ 0.84
CCDC88B-201ENST00000301897 CNTNAP4Q9C0A0 1308 aa20.29■□□□□ 0.84
CCDC88B-201ENST00000301897 WWC3Q9ULE0 1092 aa20.29■□□□□ 0.84
CCDC88B-201ENST00000301897 PXDNLA1KZ92 1463 aa20.29■□□□□ 0.84
CCDC88B-201ENST00000301897 IFFO2Q5TF58 517 aa20.28■□□□□ 0.84
CCDC88B-201ENST00000301897 CCDC87Q9NVE4 849 aa20.28■□□□□ 0.84
CCDC88B-201ENST00000301897 COL5A3P25940 1745 aaPredicted RBP20.27■□□□□ 0.84
CCDC88B-201ENST00000301897 RPS6KA4O75676 772 aa20.27■□□□□ 0.84
CCDC88B-201ENST00000301897 RFC4P35249 363 aa20.27■□□□□ 0.84
CCDC88B-201ENST00000301897 CABP4P57796 275 aa20.27■□□□□ 0.84
CCDC88B-201ENST00000301897 ZNF530Q6P9A1 599 aaPredicted RBP20.27■□□□□ 0.84
CCDC88B-201ENST00000301897 C10orf71Q711Q0 1435 aa20.27■□□□□ 0.83
CCDC88B-201ENST00000301897 ARHGEF1Q92888 912 aaKnown RBP20.26■□□□□ 0.83
CCDC88B-201ENST00000301897 C1orf141Q5JVX7 400 aa20.25■□□□□ 0.83
CCDC88B-201ENST00000301897 SLC4A9Q96Q91 983 aa20.25■□□□□ 0.83
CCDC88B-201ENST00000301897 PARP3Q9Y6F1 533 aa20.25■□□□□ 0.83
CCDC88B-201ENST00000301897 N4BP2Q86UW6 1770 aaPredicted RBP20.25■□□□□ 0.83
CCDC88B-201ENST00000301897 C4AP0C0L4 1744 aa20.24■□□□□ 0.83
CCDC88B-201ENST00000301897 KIAA1551Q9HCM1 1747 aa20.24■□□□□ 0.83
CCDC88B-201ENST00000301897 GYS1P13807 737 aa20.24■□□□□ 0.83
CCDC88B-201ENST00000301897 EIF4G2P78344 907 aaKnown RBP eCLIP20.24■□□□□ 0.83
CCDC88B-201ENST00000301897 BCS1LQ9Y276 419 aa20.24■□□□□ 0.83
CCDC88B-201ENST00000301897 KIF3CO14782 793 aa20.23■□□□□ 0.83
CCDC88B-201ENST00000301897 KDM6AO15550 1401 aaPredicted RBP20.23■□□□□ 0.83
CCDC88B-201ENST00000301897 MTHFSP49914 203 aa20.23■□□□□ 0.83
CCDC88B-201ENST00000301897 PANK3Q9H999 370 aa20.23■□□□□ 0.83
CCDC88B-201ENST00000301897 A0A0G2JLW4 131 aa20.22■□□□□ 0.83
CCDC88B-201ENST00000301897 MYH14Q7Z406 1995 aaKnown RBP20.22■□□□□ 0.83
CCDC88B-201ENST00000301897 MORC1Q86VD1 984 aa20.21■□□□□ 0.83
CCDC88B-201ENST00000301897 FCHSD2O94868 740 aa20.2■□□□□ 0.82
CCDC88B-201ENST00000301897 ARHGAP27Q6ZUM4 889 aa20.2■□□□□ 0.82
CCDC88B-201ENST00000301897 BRCA1P38398 1863 aaKnown RBP20.2■□□□□ 0.82
CCDC88B-201ENST00000301897 PTCD1O75127 700 aaKnown RBP20.19■□□□□ 0.82
CCDC88B-201ENST00000301897 DPEP1P16444 411 aa20.19■□□□□ 0.82
CCDC88B-201ENST00000301897 CRKLP46109 303 aaKnown RBP20.19■□□□□ 0.82
CCDC88B-201ENST00000301897 APLP1P51693 650 aa20.19■□□□□ 0.82
CCDC88B-201ENST00000301897 ARFGEF1Q9Y6D6 1849 aa20.18■□□□□ 0.82
CCDC88B-201ENST00000301897 TOMM70O94826 608 aa20.18■□□□□ 0.82
CCDC88B-201ENST00000301897 HSPA5P11021 654 aaKnown RBP20.17■□□□□ 0.82
CCDC88B-201ENST00000301897 NFATC2IPQ8NCF5 419 aa20.17■□□□□ 0.82
CCDC88B-201ENST00000301897 PIM2Q9P1W9 311 aa20.17■□□□□ 0.82
CCDC88B-201ENST00000301897 KNSTRNQ9Y448 316 aa20.17■□□□□ 0.82
CCDC88B-201ENST00000301897 SULT6B1Q6IMI4 303 aa20.16■□□□□ 0.82
CCDC88B-201ENST00000301897 AEBP1Q8IUX7 1158 aa20.16■□□□□ 0.82
CCDC88B-201ENST00000301897 USP42Q9H9J4 1324 aaKnown RBP20.16■□□□□ 0.82
CCDC88B-201ENST00000301897 SCN11AQ9UI33 1791 aa20.16■□□□□ 0.82
CCDC88B-201ENST00000301897 DALRD3Q5D0E6 543 aaKnown RBP20.14■□□□□ 0.81
CCDC88B-201ENST00000301897 TJP1Q07157 1748 aa20.13■□□□□ 0.81
CCDC88B-201ENST00000301897 KCNA3P22001 575 aa20.13■□□□□ 0.81
CCDC88B-201ENST00000301897 AKAP4Q5JQC9 854 aa20.13■□□□□ 0.81
CCDC88B-201ENST00000301897 PCGF6Q9BYE7 350 aa20.13■□□□□ 0.81
CCDC88B-201ENST00000301897 ZPR1O75312 459 aa20.12■□□□□ 0.81
CCDC88B-201ENST00000301897 IL13P35225 146 aa20.12■□□□□ 0.81
CCDC88B-201ENST00000301897 FKBP8Q14318 412 aa20.12■□□□□ 0.81
CCDC88B-201ENST00000301897 C9orf131Q5VYM1 1079 aa20.12■□□□□ 0.81
CCDC88B-201ENST00000301897 SRP68Q9UHB9 627 aaKnown RBP20.12■□□□□ 0.81
CCDC88B-201ENST00000301897 C16orf71Q8IYS4 520 aaPredicted RBP20.11■□□□□ 0.81
CCDC88B-201ENST00000301897 RBM46Q8TBY0 533 aaKnown RBP20.11■□□□□ 0.81
CCDC88B-201ENST00000301897 KDM2BQ8NHM5 1336 aa20.1■□□□□ 0.81
CCDC88B-201ENST00000301897 INTS5Q6P9B9 1019 aaKnown RBP20.1■□□□□ 0.81
CCDC88B-201ENST00000301897 SLC52A2Q9HAB3 445 aa20.1■□□□□ 0.81
CCDC88B-201ENST00000301897 NMRK2Q9NPI5 230 aa20.1■□□□□ 0.81
CCDC88B-201ENST00000301897 DDR1Q08345 913 aa20.09■□□□□ 0.81
CCDC88B-201ENST00000301897 POLRMTO00411 1230 aaKnown RBP20.08■□□□□ 0.81
CCDC88B-201ENST00000301897 TM4SF1P30408 202 aa20.08■□□□□ 0.81
CCDC88B-201ENST00000301897 ADAMTS7Q9UKP4 1686 aa20.07■□□□□ 0.8
CCDC88B-201ENST00000301897 MRC1P22897 1456 aa20.07■□□□□ 0.8
CCDC88B-201ENST00000301897 FSTL1Q12841 308 aa20.07■□□□□ 0.8
CCDC88B-201ENST00000301897 RNF181Q9P0P0 153 aa20.07■□□□□ 0.8
CCDC88B-201ENST00000301897 SOS1Q07889 1333 aaPredicted RBP20.06■□□□□ 0.8
CCDC88B-201ENST00000301897 DNAJC10Q8IXB1 793 aa20.06■□□□□ 0.8
CCDC88B-201ENST00000301897 ZC3H4Q9UPT8 1303 aaKnown RBP20.05■□□□□ 0.8
CCDC88B-201ENST00000301897 RNMTO43148 476 aaKnown RBP20.05■□□□□ 0.8
CCDC88B-201ENST00000301897 CYP19A1P11511 503 aaPredicted RBP20.05■□□□□ 0.8
CCDC88B-201ENST00000301897 USPL1Q5W0Q7 1092 aa20.05■□□□□ 0.8
CCDC88B-201ENST00000301897 VSIG10Q8N0Z9 540 aa20.05■□□□□ 0.8
CCDC88B-201ENST00000301897 DNAJC5GQ8N7S2 189 aa20.05■□□□□ 0.8
CCDC88B-201ENST00000301897 SBF1O95248 1867 aa20.05■□□□□ 0.8
CCDC88B-201ENST00000301897 CHRNA5P30532 468 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 211.2 ms