RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 GOLGA6L10A0A0M3HER8 536 aa7.59□□□□□ -1.19
VPS35-201ENST00000299138 GOLGA6L10A6NI86 522 aa7.59□□□□□ -1.19
VPS35-201ENST00000299138 CCDC183Q5T5S1 534 aa7.59□□□□□ -1.2
VPS35-201ENST00000299138 ARHGAP30Q7Z6I6 1101 aaPredicted RBP7.59□□□□□ -1.2
VPS35-201ENST00000299138 ANKRD44Q8N8A2 993 aa7.59□□□□□ -1.2
VPS35-201ENST00000299138 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.59□□□□□ -1.2
VPS35-201ENST00000299138 MAP3K4Q9Y6R4 1608 aa7.59□□□□□ -1.2
VPS35-201ENST00000299138 SPHKAPQ2M3C7 1700 aa7.59□□□□□ -1.2
VPS35-201ENST00000299138 ABCC4O15439 1325 aa7.58□□□□□ -1.2
VPS35-201ENST00000299138 ANKRD1Q15327 319 aa7.58□□□□□ -1.2
VPS35-201ENST00000299138 TTC22Q5TAA0 569 aa7.58□□□□□ -1.2
VPS35-201ENST00000299138 MYO5CQ9NQX4 1742 aa7.58□□□□□ -1.2
VPS35-201ENST00000299138 SRPK2P78362 688 aaKnown RBP7.58□□□□□ -1.2
VPS35-201ENST00000299138 CHD1O14646 1710 aa7.58□□□□□ -1.2
VPS35-201ENST00000299138 PAXBP1Q9Y5B6 917 aa7.58□□□□□ -1.2
VPS35-201ENST00000299138 EFCAB6Q5THR3 1501 aa7.58□□□□□ -1.2
VPS35-201ENST00000299138 GTF2A1P52655 376 aaPredicted RBP7.58□□□□□ -1.2
VPS35-201ENST00000299138 RTL1A6NKG5 1358 aa7.58□□□□□ -1.2
VPS35-201ENST00000299138 RAB11FIP3O75154 756 aa7.57□□□□□ -1.2
VPS35-201ENST00000299138 SEPT11Q9NVA2 429 aaKnown RBP7.57□□□□□ -1.2
VPS35-201ENST00000299138 PNPLA6Q8IY17 1366 aa7.57□□□□□ -1.2
VPS35-201ENST00000299138 CCDC192P0DO97 292 aa7.57□□□□□ -1.2
VPS35-201ENST00000299138 CBX1P83916 185 aa7.57□□□□□ -1.2
VPS35-201ENST00000299138 TAX1BP1Q86VP1 789 aa7.57□□□□□ -1.2
VPS35-201ENST00000299138 TMEM87AQ8NBN3 555 aa7.57□□□□□ -1.2
VPS35-201ENST00000299138 LNPKQ9C0E8 428 aa7.57□□□□□ -1.2
VPS35-201ENST00000299138 ARHGEF10O15013 1369 aa7.57□□□□□ -1.2
VPS35-201ENST00000299138 ZFYVE16Q7Z3T8 1539 aa7.57□□□□□ -1.2
VPS35-201ENST00000299138 MLH3Q9UHC1 1453 aa7.57□□□□□ -1.2
VPS35-201ENST00000299138 GTF2F1P35269 517 aaKnown RBP eCLIP7.57□□□□□ -1.2
VPS35-201ENST00000299138 PDILTQ8N807 584 aa7.57□□□□□ -1.2
VPS35-201ENST00000299138 MYRIPQ8NFW9 859 aa7.57□□□□□ -1.2
VPS35-201ENST00000299138 PIBF1Q8WXW3 757 aa7.57□□□□□ -1.2
VPS35-201ENST00000299138 NOB1Q9ULX3 412 aaKnown RBP7.57□□□□□ -1.2
VPS35-201ENST00000299138 UQCRHLA0A096LP55 91 aa7.57□□□□□ -1.2
VPS35-201ENST00000299138 UQCRHP07919 91 aa7.57□□□□□ -1.2
VPS35-201ENST00000299138 CT47A1Q5JQC4 288 aaPredicted RBP7.57□□□□□ -1.2
VPS35-201ENST00000299138 ZFYVE27Q5T4F4 411 aa7.57□□□□□ -1.2
VPS35-201ENST00000299138 TMEM57Q8N5G2 664 aa7.57□□□□□ -1.2
VPS35-201ENST00000299138 IL17RAQ96F46 866 aa7.57□□□□□ -1.2
VPS35-201ENST00000299138 RAPGEF3O95398 923 aa7.57□□□□□ -1.2
VPS35-201ENST00000299138 ODF2Q5BJF6 829 aa7.57□□□□□ -1.2
VPS35-201ENST00000299138 TBC1D9Q6ZT07 1266 aa7.56□□□□□ -1.2
VPS35-201ENST00000299138 CEP63Q96MT8 703 aa7.56□□□□□ -1.2
VPS35-201ENST00000299138 CCDC171Q6TFL3 1326 aa7.56□□□□□ -1.2
VPS35-201ENST00000299138 TTC21BQ7Z4L5 1316 aa7.56□□□□□ -1.2
VPS35-201ENST00000299138 CTAGE5O15320 804 aa7.56□□□□□ -1.2
VPS35-201ENST00000299138 ZKSCAN1P17029 563 aaPredicted RBP7.56□□□□□ -1.2
VPS35-201ENST00000299138 TWISTNBQ3B726 338 aaPredicted RBP7.56□□□□□ -1.2
VPS35-201ENST00000299138 NOL10Q9BSC4 688 aaKnown RBP7.56□□□□□ -1.2
VPS35-201ENST00000299138 SCAND2PQ9GZW5 306 aaPredicted RBP7.56□□□□□ -1.2
VPS35-201ENST00000299138 ATP7BP35670 1465 aa7.56□□□□□ -1.2
VPS35-201ENST00000299138 PSMA5P28066 241 aa7.56□□□□□ -1.2
VPS35-201ENST00000299138 ATL3Q6DD88 541 aa7.56□□□□□ -1.2
VPS35-201ENST00000299138 MCTP1Q6DN14 999 aa7.56□□□□□ -1.2
VPS35-201ENST00000299138 ADGRB3O60242 1522 aa7.56□□□□□ -1.2
VPS35-201ENST00000299138 MYO6Q9UM54 1294 aa7.56□□□□□ -1.2
VPS35-201ENST00000299138 CFAP74Q9C0B2 1584 aa7.56□□□□□ -1.2
VPS35-201ENST00000299138 SEPT7Q16181 437 aaKnown RBP7.56□□□□□ -1.2
VPS35-201ENST00000299138 ZSCAN23Q3MJ62 389 aa7.56□□□□□ -1.2
VPS35-201ENST00000299138 ERC1Q8IUD2 1116 aa7.56□□□□□ -1.2
VPS35-201ENST00000299138 DDX19AQ9NUU7 478 aaKnown RBP7.56□□□□□ -1.2
VPS35-201ENST00000299138 ADGRB2O60241 1585 aa7.55□□□□□ -1.2
VPS35-201ENST00000299138 ARHGEF40Q8TER5 1519 aa7.55□□□□□ -1.2
VPS35-201ENST00000299138 UBE2HP62256 183 aa7.55□□□□□ -1.2
VPS35-201ENST00000299138 CNKSR2Q8WXI2 1034 aa7.55□□□□□ -1.2
VPS35-201ENST00000299138 RAD50Q92878 1312 aa7.55□□□□□ -1.2
VPS35-201ENST00000299138 CYP2E1P05181 493 aaPredicted RBP7.55□□□□□ -1.2
VPS35-201ENST00000299138 NUTM2DQ5VT03 806 aaPredicted RBP7.55□□□□□ -1.2
VPS35-201ENST00000299138 CDK12Q9NYV4 1490 aaPredicted RBP7.55□□□□□ -1.2
VPS35-201ENST00000299138 CARD14Q9BXL6 1004 aa7.55□□□□□ -1.2
VPS35-201ENST00000299138 STK26Q9P289 416 aa7.55□□□□□ -1.2
VPS35-201ENST00000299138 CUL4AQ13619 759 aa7.54□□□□□ -1.2
VPS35-201ENST00000299138 RGS22Q8NE09 1264 aa7.54□□□□□ -1.2
VPS35-201ENST00000299138 ZFP91Q96JP5 570 aaPredicted RBP7.54□□□□□ -1.2
VPS35-201ENST00000299138 DEPDC5O75140 1603 aa7.54□□□□□ -1.2
VPS35-201ENST00000299138 TUBBP07437 444 aa7.54□□□□□ -1.2
VPS35-201ENST00000299138 GAS2L2Q8NHY3 880 aa7.54□□□□□ -1.2
VPS35-201ENST00000299138 COG3Q96JB2 828 aa7.54□□□□□ -1.2
VPS35-201ENST00000299138 NEO1Q92859 1461 aa7.54□□□□□ -1.2
VPS35-201ENST00000299138 ZBTB7BO15156 539 aaPredicted RBP7.54□□□□□ -1.2
VPS35-201ENST00000299138 BRD1O95696 1058 aa7.54□□□□□ -1.2
VPS35-201ENST00000299138 ANKRD20A12PQ8NF67 263 aa7.54□□□□□ -1.2
VPS35-201ENST00000299138 RTF1Q92541 710 aaKnown RBP7.54□□□□□ -1.2
VPS35-201ENST00000299138 MYO1BO43795 1136 aa7.54□□□□□ -1.2
VPS35-201ENST00000299138 MRPL50Q8N5N7 158 aaKnown RBP7.54□□□□□ -1.2
VPS35-201ENST00000299138 NAT10Q9H0A0 1025 aaKnown RBP7.54□□□□□ -1.2
VPS35-201ENST00000299138 SUDS3Q9H7L9 328 aaPredicted RBP7.54□□□□□ -1.2
VPS35-201ENST00000299138 TOMM22Q9NS69 142 aa7.54□□□□□ -1.2
VPS35-201ENST00000299138 SAFB2Q14151 953 aaKnown RBP eCLIP7.54□□□□□ -1.2
VPS35-201ENST00000299138 SRRTQ9BXP5 876 aaKnown RBP7.54□□□□□ -1.2
VPS35-201ENST00000299138 KRT32Q14532 448 aa7.53□□□□□ -1.2
VPS35-201ENST00000299138 RNF214Q8ND24 703 aa7.53□□□□□ -1.2
VPS35-201ENST00000299138 TM6SF1Q9BZW5 370 aa7.53□□□□□ -1.2
VPS35-201ENST00000299138 TRAK1Q9UPV9 953 aa7.53□□□□□ -1.2
VPS35-201ENST00000299138 MSH6P52701 1360 aa7.53□□□□□ -1.2
VPS35-201ENST00000299138 RLBP1P12271 317 aa7.53□□□□□ -1.2
VPS35-201ENST00000299138 USP26Q9BXU7 913 aa7.53□□□□□ -1.2
VPS35-201ENST00000299138 ABCA9Q8IUA7 1624 aa7.53□□□□□ -1.2
VPS35-201ENST00000299138 UGGT1Q9NYU2 1555 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms