RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 RPAINQ86UA6 219 aa13.63□□□□□ -0.23
SHROOM3-201ENST00000296043 ANO10Q9NW15 660 aa13.63□□□□□ -0.23
SHROOM3-201ENST00000296043 VGFO15240 615 aaPredicted RBP13.63□□□□□ -0.23
SHROOM3-201ENST00000296043 HCLS1P14317 486 aaPredicted RBP13.63□□□□□ -0.23
SHROOM3-201ENST00000296043 CCDC96Q2M329 555 aa13.63□□□□□ -0.23
SHROOM3-201ENST00000296043 PCK1P35558 622 aa13.63□□□□□ -0.23
SHROOM3-201ENST00000296043 ANKRD1Q15327 319 aa13.63□□□□□ -0.23
SHROOM3-201ENST00000296043 FRMD3A2A2Y4 597 aa13.63□□□□□ -0.23
SHROOM3-201ENST00000296043 ALS2CR12Q96Q35 445 aa13.63□□□□□ -0.23
SHROOM3-201ENST00000296043 BRD2P25440 801 aaKnown RBP13.63□□□□□ -0.23
SHROOM3-201ENST00000296043 CCDC83Q8IWF9 413 aa13.63□□□□□ -0.23
SHROOM3-201ENST00000296043 PAFAH1B1P43034 410 aa13.63□□□□□ -0.23
SHROOM3-201ENST00000296043 U2AF2P26368 475 aaKnown RBP eCLIP13.62□□□□□ -0.23
SHROOM3-201ENST00000296043 ANKRD30AQ9BXX3 1397 aa13.62□□□□□ -0.23
SHROOM3-201ENST00000296043 BIN1O00499 593 aa13.62□□□□□ -0.23
SHROOM3-201ENST00000296043 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.62□□□□□ -0.23
SHROOM3-201ENST00000296043 TMCO4Q5TGY1 634 aa13.62□□□□□ -0.23
SHROOM3-201ENST00000296043 NOL3O60936 208 aaKnown RBP13.62□□□□□ -0.23
SHROOM3-201ENST00000296043 TTC12Q9H892 705 aaPredicted RBP13.62□□□□□ -0.23
SHROOM3-201ENST00000296043 DNAI1Q9UI46 699 aa13.62□□□□□ -0.23
SHROOM3-201ENST00000296043 TPX2Q9ULW0 747 aaKnown RBP13.62□□□□□ -0.23
SHROOM3-201ENST00000296043 GOLGA1Q92805 767 aa13.62□□□□□ -0.23
SHROOM3-201ENST00000296043 JADE2Q9NQC1 790 aa13.62□□□□□ -0.23
SHROOM3-201ENST00000296043 DDX23Q9BUQ8 820 aaKnown RBP13.61□□□□□ -0.23
SHROOM3-201ENST00000296043 MACROD2A1Z1Q3 448 aa13.61□□□□□ -0.23
SHROOM3-201ENST00000296043 CHD1LQ86WJ1 897 aa13.61□□□□□ -0.23
SHROOM3-201ENST00000296043 PPP6R1Q9UPN7 881 aa13.61□□□□□ -0.23
SHROOM3-201ENST00000296043 FEZ1Q99689 392 aa13.61□□□□□ -0.23
SHROOM3-201ENST00000296043 BAG4O95429 457 aaKnown RBP13.61□□□□□ -0.23
SHROOM3-201ENST00000296043 AP1ARQ63HQ0 302 aa13.61□□□□□ -0.23
SHROOM3-201ENST00000296043 ZKSCAN5Q9Y2L8 839 aa13.61□□□□□ -0.23
SHROOM3-201ENST00000296043 CCDC150Q8NCX0 1101 aa13.6□□□□□ -0.23
SHROOM3-201ENST00000296043 USO1O60763 962 aaKnown RBP13.6□□□□□ -0.23
SHROOM3-201ENST00000296043 SKILP12757 684 aa13.6□□□□□ -0.23
SHROOM3-201ENST00000296043 RFC1P35251 1148 aaPredicted RBP13.6□□□□□ -0.23
SHROOM3-201ENST00000296043 WDR63Q8IWG1 891 aa13.6□□□□□ -0.23
SHROOM3-201ENST00000296043 RABEP2Q9H5N1 569 aa13.6□□□□□ -0.23
SHROOM3-201ENST00000296043 SURF6O75683 361 aaKnown RBP13.6□□□□□ -0.23
SHROOM3-201ENST00000296043 FEZ2Q9UHY8 353 aaPredicted RBP13.6□□□□□ -0.23
SHROOM3-201ENST00000296043 LACTBP83111 547 aaPredicted RBP13.6□□□□□ -0.23
SHROOM3-201ENST00000296043 GOLGA6L9A6NEM1 432 aa13.6□□□□□ -0.23
SHROOM3-201ENST00000296043 CEP128Q6ZU80 1094 aa13.6□□□□□ -0.23
SHROOM3-201ENST00000296043 CEP120Q8N960 986 aa13.6□□□□□ -0.23
SHROOM3-201ENST00000296043 HOOK3Q86VS8 718 aa13.59□□□□□ -0.23
SHROOM3-201ENST00000296043 TRAK1Q9UPV9 953 aa13.59□□□□□ -0.23
SHROOM3-201ENST00000296043 FAM76AQ8TAV0 307 aa13.59□□□□□ -0.23
SHROOM3-201ENST00000296043 A0A1W2PRG0 241 aa13.59□□□□□ -0.23
SHROOM3-201ENST00000296043 DIXDC1Q155Q3 683 aa13.59□□□□□ -0.23
SHROOM3-201ENST00000296043 SLU7O95391 586 aaKnown RBP13.59□□□□□ -0.23
SHROOM3-201ENST00000296043 TCHPQ9BT92 498 aa13.59□□□□□ -0.23
SHROOM3-201ENST00000296043 HIP1O00291 1037 aa13.59□□□□□ -0.23
SHROOM3-201ENST00000296043 C1orf141Q5JVX7 400 aa13.59□□□□□ -0.23
SHROOM3-201ENST00000296043 ISM2Q6H9L7 571 aa13.59□□□□□ -0.23
SHROOM3-201ENST00000296043 SELENOSQ9BQE4 189 aa13.59□□□□□ -0.23
SHROOM3-201ENST00000296043 TSPYL4Q9UJ04 414 aa13.59□□□□□ -0.23
SHROOM3-201ENST00000296043 WASHC2AQ641Q2 1341 aa13.59□□□□□ -0.23
SHROOM3-201ENST00000296043 HMOX1P09601 288 aa13.59□□□□□ -0.23
SHROOM3-201ENST00000296043 NAA15Q9BXJ9 866 aaKnown RBP13.59□□□□□ -0.23
SHROOM3-201ENST00000296043 SIL1Q9H173 461 aa13.59□□□□□ -0.23
SHROOM3-201ENST00000296043 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.59□□□□□ -0.23
SHROOM3-201ENST00000296043 RPUSD2Q8IZ73 545 aaKnown RBP13.59□□□□□ -0.23
SHROOM3-201ENST00000296043 PPP1R12CQ9BZL4 782 aa13.59□□□□□ -0.23
SHROOM3-201ENST00000296043 INPP5BP32019 993 aa13.58□□□□□ -0.23
SHROOM3-201ENST00000296043 ANAPC15P60006 121 aa13.58□□□□□ -0.23
SHROOM3-201ENST00000296043 CAPZA3Q96KX2 299 aa13.58□□□□□ -0.23
SHROOM3-201ENST00000296043 OPA1O60313 960 aa13.58□□□□□ -0.24
SHROOM3-201ENST00000296043 FSD2A1L4K1 749 aa13.58□□□□□ -0.24
SHROOM3-201ENST00000296043 KRI1Q8N9T8 703 aaKnown RBP13.58□□□□□ -0.24
SHROOM3-201ENST00000296043 GCC1Q96CN9 775 aa13.58□□□□□ -0.24
SHROOM3-201ENST00000296043 PEX19P40855 299 aa13.58□□□□□ -0.24
SHROOM3-201ENST00000296043 YEATS4O95619 227 aa13.58□□□□□ -0.24
SHROOM3-201ENST00000296043 FMNL3Q8IVF7 1028 aa13.58□□□□□ -0.24
SHROOM3-201ENST00000296043 PRPF4BQ13523 1007 aaKnown RBP13.58□□□□□ -0.24
SHROOM3-201ENST00000296043 NBPF8Q3BBV2 869 aa13.58□□□□□ -0.24
SHROOM3-201ENST00000296043 LMNTD2Q8IXW0 634 aa13.58□□□□□ -0.24
SHROOM3-201ENST00000296043 RHOXF2BP0C7M4 288 aa13.57□□□□□ -0.24
SHROOM3-201ENST00000296043 TRIM22Q8IYM9 498 aa13.57□□□□□ -0.24
SHROOM3-201ENST00000296043 TSR2Q969E8 191 aaKnown RBP13.57□□□□□ -0.24
SHROOM3-201ENST00000296043 RHOXF2Q9BQY4 288 aa13.57□□□□□ -0.24
SHROOM3-201ENST00000296043 FLIIQ13045 1269 aa13.57□□□□□ -0.24
SHROOM3-201ENST00000296043 PDE3AQ14432 1141 aa13.57□□□□□ -0.24
SHROOM3-201ENST00000296043 DDX46Q7L014 1031 aaKnown RBP13.57□□□□□ -0.24
SHROOM3-201ENST00000296043 ANKRD18BA2A2Z9 1011 aa13.57□□□□□ -0.24
SHROOM3-201ENST00000296043 GABPB1Q06547 395 aaPredicted RBP13.57□□□□□ -0.24
SHROOM3-201ENST00000296043 FSIP1Q8NA03 581 aa13.57□□□□□ -0.24
SHROOM3-201ENST00000296043 ZBTB16Q05516 673 aa13.57□□□□□ -0.24
SHROOM3-201ENST00000296043 GIMAP6Q6P9H5 292 aa13.57□□□□□ -0.24
SHROOM3-201ENST00000296043 RAB3IL1Q8TBN0 382 aa13.57□□□□□ -0.24
SHROOM3-201ENST00000296043 ZSCAN31Q96LW9 406 aaPredicted RBP13.57□□□□□ -0.24
SHROOM3-201ENST00000296043 PPP1R14CQ8TAE6 165 aa13.57□□□□□ -0.24
SHROOM3-201ENST00000296043 PIK3R5Q8WYR1 880 aa13.56□□□□□ -0.24
SHROOM3-201ENST00000296043 DIAPH1O60610 1272 aaKnown RBP13.56□□□□□ -0.24
SHROOM3-201ENST00000296043 BLOC1S2Q6QNY1 142 aa13.56□□□□□ -0.24
SHROOM3-201ENST00000296043 C17orf53Q8N3J3 647 aaPredicted RBP13.56□□□□□ -0.24
SHROOM3-201ENST00000296043 AFAP1L1Q8TED9 768 aa13.56□□□□□ -0.24
SHROOM3-201ENST00000296043 MLECQ14165 292 aa13.56□□□□□ -0.24
SHROOM3-201ENST00000296043 CWC27Q6UX04 472 aaKnown RBP13.56□□□□□ -0.24
SHROOM3-201ENST00000296043 MORC4Q8TE76 937 aa13.56□□□□□ -0.24
SHROOM3-201ENST00000296043 PIBF1Q8WXW3 757 aa13.56□□□□□ -0.24
SHROOM3-201ENST00000296043 WHAMMP3Q1A5X7 153 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms