RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 KIF24Q5T7B8 1368 aa14.29□□□□□ -0.12
CUX1-202ENST00000292538 DCTPP1Q9H773 170 aa14.28□□□□□ -0.12
CUX1-202ENST00000292538 LRRFIP2Q9Y608 721 aaKnown RBP14.28□□□□□ -0.12
CUX1-202ENST00000292538 RTL1A6NKG5 1358 aa14.28□□□□□ -0.12
CUX1-202ENST00000292538 PI4KAP2A4QPH2 592 aa14.28□□□□□ -0.12
CUX1-202ENST00000292538 PIP4K2AP48426 406 aaPredicted RBP14.28□□□□□ -0.12
CUX1-202ENST00000292538 AMOTQ4VCS5 1084 aa14.28□□□□□ -0.12
CUX1-202ENST00000292538 RPAP2Q8IXW5 612 aaPredicted RBP14.28□□□□□ -0.12
CUX1-202ENST00000292538 PI4KAP1Q8N8J0 262 aa14.28□□□□□ -0.12
CUX1-202ENST00000292538 ZNF335Q9H4Z2 1342 aaPredicted RBP14.27□□□□□ -0.12
CUX1-202ENST00000292538 RGS12O14924 1447 aa14.27□□□□□ -0.12
CUX1-202ENST00000292538 HMMRO75330 724 aa14.27□□□□□ -0.13
CUX1-202ENST00000292538 ERBB3P21860 1342 aa14.27□□□□□ -0.13
CUX1-202ENST00000292538 NPHP3Q7Z494 1330 aa14.27□□□□□ -0.13
CUX1-202ENST00000292538 PNMA6EA0A0J9YXQ4 647 aa14.26□□□□□ -0.13
CUX1-202ENST00000292538 UBTFL1P0CB47 393 aaPredicted RBP14.26□□□□□ -0.13
CUX1-202ENST00000292538 PLEKHM2Q8IWE5 1019 aa14.26□□□□□ -0.13
CUX1-202ENST00000292538 NFATC2IPQ8NCF5 419 aa14.26□□□□□ -0.13
CUX1-202ENST00000292538 STRN4Q9NRL3 753 aa14.26□□□□□ -0.13
CUX1-202ENST00000292538 MYL6BP14649 208 aa14.26□□□□□ -0.13
CUX1-202ENST00000292538 TATP17735 454 aaPredicted RBP14.25□□□□□ -0.13
CUX1-202ENST00000292538 PROSER3Q2NL68 480 aa14.25□□□□□ -0.13
CUX1-202ENST00000292538 TBC1D9Q6ZT07 1266 aa14.25□□□□□ -0.13
CUX1-202ENST00000292538 RGPD1P0DJD0 1748 aa14.25□□□□□ -0.13
CUX1-202ENST00000292538 BMP2KLQ5H9B9 411 aa14.25□□□□□ -0.13
CUX1-202ENST00000292538 TBC1D2Q9BYX2 928 aa14.25□□□□□ -0.13
CUX1-202ENST00000292538 RTN4Q9NQC3 1192 aaKnown RBP14.25□□□□□ -0.13
CUX1-202ENST00000292538 PRDM11Q9NQV5 511 aa14.25□□□□□ -0.13
CUX1-202ENST00000292538 NWD1Q149M9 1564 aa14.25□□□□□ -0.13
CUX1-202ENST00000292538 GSPT1P15170 499 aaKnown RBP14.25□□□□□ -0.13
CUX1-202ENST00000292538 DEKP35659 375 aaKnown RBP14.25□□□□□ -0.13
CUX1-202ENST00000292538 FOXD4L1Q9NU39 408 aa14.25□□□□□ -0.13
CUX1-202ENST00000292538 NFKBIBQ15653 356 aa14.24□□□□□ -0.13
CUX1-202ENST00000292538 IL1RAPL2Q9NP60 686 aa14.24□□□□□ -0.13
CUX1-202ENST00000292538 GNAI3P08754 354 aa14.24□□□□□ -0.13
CUX1-202ENST00000292538 SRCIN1Q9C0H9 1055 aa14.24□□□□□ -0.13
CUX1-202ENST00000292538 TOM1L2Q6ZVM7 507 aa14.23□□□□□ -0.13
CUX1-202ENST00000292538 BRINP3Q76B58 766 aa14.23□□□□□ -0.13
CUX1-202ENST00000292538 USP44Q9H0E7 712 aa14.23□□□□□ -0.13
CUX1-202ENST00000292538 KDM4FA0A1W2PPD8 638 aa14.23□□□□□ -0.13
CUX1-202ENST00000292538 NFAT5O94916 1531 aa14.23□□□□□ -0.13
CUX1-202ENST00000292538 NBPF7P0C2Y1 421 aaPredicted RBP14.23□□□□□ -0.13
CUX1-202ENST00000292538 ZNF142P52746 1687 aaPredicted RBP14.23□□□□□ -0.13
CUX1-202ENST00000292538 FRAT2O75474 233 aaPredicted RBP14.22□□□□□ -0.13
CUX1-202ENST00000292538 SLAIN2Q9P270 581 aa14.22□□□□□ -0.13
CUX1-202ENST00000292538 DDX54Q8TDD1 881 aaKnown RBP14.22□□□□□ -0.13
CUX1-202ENST00000292538 PXDNQ92626 1479 aa14.22□□□□□ -0.13
CUX1-202ENST00000292538 DNAAF4Q8WXU2 420 aa14.21□□□□□ -0.13
CUX1-202ENST00000292538 MAP3K2Q9Y2U5 619 aa14.21□□□□□ -0.13
CUX1-202ENST00000292538 MST1RQ04912 1400 aa14.21□□□□□ -0.13
CUX1-202ENST00000292538 CEMIPQ8WUJ3 1361 aa14.21□□□□□ -0.13
CUX1-202ENST00000292538 SURF6O75683 361 aaKnown RBP14.21□□□□□ -0.13
CUX1-202ENST00000292538 CWF19L2Q2TBE0 894 aaKnown RBP14.21□□□□□ -0.13
CUX1-202ENST00000292538 RILPL2Q969X0 211 aa14.21□□□□□ -0.13
CUX1-202ENST00000292538 RBM42Q9BTD8 480 aaKnown RBP14.21□□□□□ -0.13
CUX1-202ENST00000292538 C9orf78Q9NZ63 289 aaPredicted RBP14.21□□□□□ -0.13
CUX1-202ENST00000292538 TRIM6-TRIM34B2RNG4 842 aa14.21□□□□□ -0.14
CUX1-202ENST00000292538 GIGYF1O75420 1035 aaPredicted RBP14.21□□□□□ -0.14
CUX1-202ENST00000292538 SPG7Q9UQ90 795 aa14.21□□□□□ -0.14
CUX1-202ENST00000292538 ATP10DQ9P241 1426 aa14.2□□□□□ -0.14
CUX1-202ENST00000292538 SRGAP3O43295 1099 aa14.2□□□□□ -0.14
CUX1-202ENST00000292538 OS9Q13438 667 aaPredicted RBP14.2□□□□□ -0.14
CUX1-202ENST00000292538 JARID2Q92833 1246 aaPredicted RBP14.2□□□□□ -0.14
CUX1-202ENST00000292538 DBF4Q9UBU7 674 aaPredicted RBP14.2□□□□□ -0.14
CUX1-202ENST00000292538 CDC45O75419 566 aa14.2□□□□□ -0.14
CUX1-202ENST00000292538 MAP4K4O95819 1239 aaPredicted RBP14.2□□□□□ -0.14
CUX1-202ENST00000292538 HSP90AA1P07900 732 aaKnown RBP14.2□□□□□ -0.14
CUX1-202ENST00000292538 SDSP20132 328 aa14.2□□□□□ -0.14
CUX1-202ENST00000292538 EVA1CP58658 441 aa14.2□□□□□ -0.14
CUX1-202ENST00000292538 TTC22Q5TAA0 569 aa14.2□□□□□ -0.14
CUX1-202ENST00000292538 PPP1R42Q7Z4L9 355 aa14.2□□□□□ -0.14
CUX1-202ENST00000292538 LTN1O94822 1766 aa14.19□□□□□ -0.14
CUX1-202ENST00000292538 NUTM1Q86Y26 1132 aa14.19□□□□□ -0.14
CUX1-202ENST00000292538 TTC5Q8N0Z6 440 aa14.19□□□□□ -0.14
CUX1-202ENST00000292538 LRRCC1Q9C099 1032 aa14.19□□□□□ -0.14
CUX1-202ENST00000292538 HSCBQ8IWL3 235 aa14.19□□□□□ -0.14
CUX1-202ENST00000292538 BABAM1Q9NWV8 329 aa14.19□□□□□ -0.14
CUX1-202ENST00000292538 ZNF790Q6PG37 636 aa14.18□□□□□ -0.14
CUX1-202ENST00000292538 SPATA31A3Q5VYP0 1347 aa14.18□□□□□ -0.14
CUX1-202ENST00000292538 PHKG2P15735 406 aa14.18□□□□□ -0.14
CUX1-202ENST00000292538 CABP4P57796 275 aa14.18□□□□□ -0.14
CUX1-202ENST00000292538 ATP8B2P98198 1209 aa14.18□□□□□ -0.14
CUX1-202ENST00000292538 ZNF330Q9Y3S2 320 aaPredicted RBP14.18□□□□□ -0.14
CUX1-202ENST00000292538 A0A0G2JS52 829 aa14.18□□□□□ -0.14
CUX1-202ENST00000292538 RIC3Q7Z5B4 369 aa14.18□□□□□ -0.14
CUX1-202ENST00000292538 IFNL2Q8IZJ0 200 aa14.18□□□□□ -0.14
CUX1-202ENST00000292538 ARXQ96QS3 562 aa14.18□□□□□ -0.14
CUX1-202ENST00000292538 CYP27B1O15528 508 aa14.17□□□□□ -0.14
CUX1-202ENST00000292538 ZNF496Q96IT1 587 aaPredicted RBP14.17□□□□□ -0.14
CUX1-202ENST00000292538 MARF1Q9Y4F3 1742 aaKnown RBP14.17□□□□□ -0.14
CUX1-202ENST00000292538 SLC52A2Q9HAB3 445 aa14.17□□□□□ -0.14
CUX1-202ENST00000292538 PTCD1O75127 700 aaKnown RBP14.16□□□□□ -0.14
CUX1-202ENST00000292538 HSP90AB1P08238 724 aaKnown RBP14.16□□□□□ -0.14
CUX1-202ENST00000292538 BEND3Q5T5X7 828 aa14.16□□□□□ -0.14
CUX1-202ENST00000292538 USP16Q9Y5T5 823 aa14.16□□□□□ -0.14
CUX1-202ENST00000292538 PDE1AP54750 535 aa14.16□□□□□ -0.14
CUX1-202ENST00000292538 CASC1Q6TDU7 716 aa14.16□□□□□ -0.14
CUX1-202ENST00000292538 RGPD2P0DJD1 1756 aa14.15□□□□□ -0.14
CUX1-202ENST00000292538 PA2G4Q9UQ80 394 aaKnown RBP14.14□□□□□ -0.15
CUX1-202ENST00000292538 COPS6Q7L5N1 327 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms