RNA–Protein interactions for RNA: ENST00000276573.11

TRIM55-201, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,960 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-201ENST00000276573 KCNQ3O43525 872 aa12.05□□□□□ -0.48
TRIM55-201ENST00000276573 HOXB7P09629 217 aa12.05□□□□□ -0.48
TRIM55-201ENST00000276573 TATP17735 454 aaPredicted RBP12.05□□□□□ -0.48
TRIM55-201ENST00000276573 FLIIQ13045 1269 aa12.05□□□□□ -0.48
TRIM55-201ENST00000276573 ANKRD44Q8N8A2 993 aa12.05□□□□□ -0.48
TRIM55-201ENST00000276573 CHMP4AQ9BY43 222 aa12.05□□□□□ -0.48
TRIM55-201ENST00000276573 NOP58Q9Y2X3 529 aaKnown RBP12.05□□□□□ -0.48
TRIM55-201ENST00000276573 OVOS2A0A0G2JMS6 1433 aa12.04□□□□□ -0.48
TRIM55-201ENST00000276573 CSB-PGBD3P0DP91 1061 aa12.04□□□□□ -0.48
TRIM55-201ENST00000276573 HDGFL1Q5TGJ6 251 aa12.04□□□□□ -0.48
TRIM55-201ENST00000276573 RPAP2Q8IXW5 612 aaPredicted RBP12.04□□□□□ -0.48
TRIM55-201ENST00000276573 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.04□□□□□ -0.48
TRIM55-201ENST00000276573 ANKRD45Q5TZF3 282 aa12.03□□□□□ -0.48
TRIM55-201ENST00000276573 SLC4A10Q6U841 1118 aa12.03□□□□□ -0.48
TRIM55-201ENST00000276573 ERICH6Q7L0X2 663 aa12.03□□□□□ -0.48
TRIM55-201ENST00000276573 MEIS3Q99687 375 aa12.03□□□□□ -0.48
TRIM55-201ENST00000276573 ANP32EQ9BTT0 268 aa12.03□□□□□ -0.48
TRIM55-201ENST00000276573 SPG7Q9UQ90 795 aa12.03□□□□□ -0.48
TRIM55-201ENST00000276573 ABCC6O95255 1503 aa12.03□□□□□ -0.48
TRIM55-201ENST00000276573 SEC24BO95487 1268 aa12.03□□□□□ -0.48
TRIM55-201ENST00000276573 FKBP5Q13451 457 aaPredicted RBP12.03□□□□□ -0.48
TRIM55-201ENST00000276573 LNPKQ9C0E8 428 aa12.03□□□□□ -0.48
TRIM55-201ENST00000276573 DCTPP1Q9H773 170 aa12.03□□□□□ -0.48
TRIM55-201ENST00000276573 CRYBG1Q9Y4K1 1723 aa12.02□□□□□ -0.48
TRIM55-201ENST00000276573 DDRGK1Q96HY6 314 aa12.02□□□□□ -0.49
TRIM55-201ENST00000276573 KDM3BQ7LBC6 1761 aa12.02□□□□□ -0.49
TRIM55-201ENST00000276573 CACNA1FO60840 1977 aa12.02□□□□□ -0.49
TRIM55-201ENST00000276573 EIF2S2P20042 333 aaKnown RBP12.01□□□□□ -0.49
TRIM55-201ENST00000276573 CEP85Q6P2H3 762 aa12.01□□□□□ -0.49
TRIM55-201ENST00000276573 PHKG2P15735 406 aa12.01□□□□□ -0.49
TRIM55-201ENST00000276573 PHAXQ9H814 394 aaKnown RBP12.01□□□□□ -0.49
TRIM55-201ENST00000276573 FAM208AQ9UK61 1670 aaKnown RBP12.01□□□□□ -0.49
TRIM55-201ENST00000276573 PLEKHG2Q9H7P9 1386 aa12□□□□□ -0.49
TRIM55-201ENST00000276573 HEG1Q9ULI3 1381 aa12□□□□□ -0.49
TRIM55-201ENST00000276573 IFNL2Q8IZJ0 200 aa12□□□□□ -0.49
TRIM55-201ENST00000276573 ATP10DQ9P241 1426 aa12□□□□□ -0.49
TRIM55-201ENST00000276573 VIRMAQ69YN4 1812 aaKnown RBP12□□□□□ -0.49
TRIM55-201ENST00000276573 ADAMTS7Q9UKP4 1686 aa12□□□□□ -0.49
TRIM55-201ENST00000276573 GIGYF1O75420 1035 aaPredicted RBP11.99□□□□□ -0.49
TRIM55-201ENST00000276573 PRDM11Q9NQV5 511 aa11.99□□□□□ -0.49
TRIM55-201ENST00000276573 GNAI3P08754 354 aa11.99□□□□□ -0.49
TRIM55-201ENST00000276573 CHPF2Q9P2E5 772 aa11.99□□□□□ -0.49
TRIM55-201ENST00000276573 MEGF6O75095 1541 aa11.99□□□□□ -0.49
TRIM55-201ENST00000276573 GNAI2P04899 355 aa11.98□□□□□ -0.49
TRIM55-201ENST00000276573 SLC52A2Q9HAB3 445 aa11.98□□□□□ -0.49
TRIM55-201ENST00000276573 WDR17Q8IZU2 1322 aa11.97□□□□□ -0.49
TRIM55-201ENST00000276573 CYP27B1O15528 508 aa11.97□□□□□ -0.49
TRIM55-201ENST00000276573 HMMRO75330 724 aa11.97□□□□□ -0.49
TRIM55-201ENST00000276573 NFATC2IPQ8NCF5 419 aa11.97□□□□□ -0.49
TRIM55-201ENST00000276573 DCAF5Q96JK2 942 aa11.97□□□□□ -0.49
TRIM55-201ENST00000276573 DBF4Q9UBU7 674 aaPredicted RBP11.97□□□□□ -0.49
TRIM55-201ENST00000276573 SIPA1L3O60292 1781 aaPredicted RBP11.97□□□□□ -0.49
TRIM55-201ENST00000276573 KDM6AO15550 1401 aaPredicted RBP11.97□□□□□ -0.49
TRIM55-201ENST00000276573 HSP90AB1P08238 724 aaKnown RBP11.96□□□□□ -0.49
TRIM55-201ENST00000276573 ZNF790Q6PG37 636 aa11.96□□□□□ -0.49
TRIM55-201ENST00000276573 USP44Q9H0E7 712 aa11.96□□□□□ -0.49
TRIM55-201ENST00000276573 PXDNLA1KZ92 1463 aa11.96□□□□□ -0.5
TRIM55-201ENST00000276573 ATP8B2P98198 1209 aa11.96□□□□□ -0.5
TRIM55-201ENST00000276573 BMP2KLQ5H9B9 411 aa11.96□□□□□ -0.5
TRIM55-201ENST00000276573 TOM1L2Q6ZVM7 507 aa11.96□□□□□ -0.5
TRIM55-201ENST00000276573 UPF2Q9HAU5 1272 aaKnown RBP11.96□□□□□ -0.5
TRIM55-201ENST00000276573 SCN11AQ9UI33 1791 aa11.95□□□□□ -0.5
TRIM55-201ENST00000276573 PRAMEF22A3QJZ6 481 aa11.95□□□□□ -0.5
TRIM55-201ENST00000276573 ANXA1P04083 346 aa11.95□□□□□ -0.5
TRIM55-201ENST00000276573 SLC39A6Q13433 755 aa11.95□□□□□ -0.5
TRIM55-201ENST00000276573 DNAAF4Q8WXU2 420 aa11.95□□□□□ -0.5
TRIM55-201ENST00000276573 SRCIN1Q9C0H9 1055 aa11.95□□□□□ -0.5
TRIM55-201ENST00000276573 PI4KAP2A4QPH2 592 aa11.94□□□□□ -0.5
TRIM55-201ENST00000276573 PLEKHM2Q8IWE5 1019 aa11.94□□□□□ -0.5
TRIM55-201ENST00000276573 PI4KAP1Q8N8J0 262 aa11.94□□□□□ -0.5
TRIM55-201ENST00000276573 CARD10Q9BWT7 1032 aa11.94□□□□□ -0.5
TRIM55-201ENST00000276573 NHSL1Q5SYE7 1610 aa11.94□□□□□ -0.5
TRIM55-201ENST00000276573 BEND3Q5T5X7 828 aa11.94□□□□□ -0.5
TRIM55-201ENST00000276573 C16orf71Q8IYS4 520 aaPredicted RBP11.94□□□□□ -0.5
TRIM55-201ENST00000276573 ZCRB1Q8TBF4 217 aaKnown RBP11.94□□□□□ -0.5
TRIM55-201ENST00000276573 TBC1D32Q96NH3 1257 aa11.94□□□□□ -0.5
TRIM55-201ENST00000276573 HYPKQ9NX55 129 aa11.94□□□□□ -0.5
TRIM55-201ENST00000276573 COL5A2P05997 1499 aaPredicted RBP11.93□□□□□ -0.5
TRIM55-201ENST00000276573 PROSER3Q2NL68 480 aa11.93□□□□□ -0.5
TRIM55-201ENST00000276573 DDX21Q9NR30 783 aaKnown RBP eCLIP11.93□□□□□ -0.5
TRIM55-201ENST00000276573 PKD1L3Q7Z443 1732 aa11.93□□□□□ -0.5
TRIM55-201ENST00000276573 UBTFL1P0CB47 393 aaPredicted RBP11.92□□□□□ -0.5
TRIM55-201ENST00000276573 CABP4P57796 275 aa11.92□□□□□ -0.5
TRIM55-201ENST00000276573 EVA1CP58658 441 aa11.92□□□□□ -0.5
TRIM55-201ENST00000276573 LRRFIP2Q9Y608 721 aaKnown RBP11.92□□□□□ -0.5
TRIM55-201ENST00000276573 N4BP2Q86UW6 1770 aaPredicted RBP11.92□□□□□ -0.5
TRIM55-201ENST00000276573 ADCY9O60503 1353 aa11.92□□□□□ -0.5
TRIM55-201ENST00000276573 SMARCA5O60264 1052 aaPredicted RBP11.92□□□□□ -0.5
TRIM55-201ENST00000276573 KSR2Q6VAB6 950 aa11.92□□□□□ -0.5
TRIM55-201ENST00000276573 ZNF496Q96IT1 587 aaPredicted RBP11.92□□□□□ -0.5
TRIM55-201ENST00000276573 PNMA6EA0A0J9YXQ4 647 aa11.91□□□□□ -0.5
TRIM55-201ENST00000276573 IL2RBP14784 551 aa11.91□□□□□ -0.5
TRIM55-201ENST00000276573 PDIA6Q15084 440 aa11.91□□□□□ -0.5
TRIM55-201ENST00000276573 LARP1Q6PKG0 1096 aaKnown RBP11.91□□□□□ -0.5
TRIM55-201ENST00000276573 STRN4Q9NRL3 753 aa11.91□□□□□ -0.5
TRIM55-201ENST00000276573 DAXXQ9UER7 740 aaPredicted RBP11.91□□□□□ -0.5
TRIM55-201ENST00000276573 ABCA3Q99758 1704 aa11.91□□□□□ -0.5
TRIM55-201ENST00000276573 APBB1O00213 710 aa11.9□□□□□ -0.5
TRIM55-201ENST00000276573 ALDH1L1O75891 902 aa11.9□□□□□ -0.5
TRIM55-201ENST00000276573 SLC4A3P48751 1232 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms