RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 MPHOSPH8Q99549 860 aa9.3□□□□□ -0.92
LIMD1-201ENST00000273317 PYM1Q9BRP8 204 aaKnown RBP9.3□□□□□ -0.92
LIMD1-201ENST00000273317 TDO2P48775 406 aa9.3□□□□□ -0.92
LIMD1-201ENST00000273317 SMC1AQ14683 1233 aaKnown RBP9.3□□□□□ -0.92
LIMD1-201ENST00000273317 HMGB1P09429 215 aaKnown RBP9.29□□□□□ -0.92
LIMD1-201ENST00000273317 HMGXB3Q12766 1538 aa9.29□□□□□ -0.92
LIMD1-201ENST00000273317 EHBP1Q8NDI1 1231 aa9.29□□□□□ -0.92
LIMD1-201ENST00000273317 CCDC196A0A1B0GTZ2 297 aa9.29□□□□□ -0.92
LIMD1-201ENST00000273317 STK3Q13188 491 aa9.29□□□□□ -0.92
LIMD1-201ENST00000273317 SRRTQ9BXP5 876 aaKnown RBP9.29□□□□□ -0.92
LIMD1-201ENST00000273317 TROQ12816 1431 aaPredicted RBP9.29□□□□□ -0.92
LIMD1-201ENST00000273317 RTEL1-TNFRSF6BF6WH68 1400 aa9.29□□□□□ -0.92
LIMD1-201ENST00000273317 CFAP100Q494V2 611 aa9.29□□□□□ -0.92
LIMD1-201ENST00000273317 STX1AQ16623 288 aa9.29□□□□□ -0.92
LIMD1-201ENST00000273317 DDX12PQ92771 950 aa9.29□□□□□ -0.92
LIMD1-201ENST00000273317 ALDH1L2Q3SY69 923 aa9.29□□□□□ -0.92
LIMD1-201ENST00000273317 LUZP1Q86V48 1076 aa9.29□□□□□ -0.92
LIMD1-201ENST00000273317 STK11IPQ8N1F8 1099 aa9.29□□□□□ -0.92
LIMD1-201ENST00000273317 MTMR7Q9Y216 660 aa9.28□□□□□ -0.92
LIMD1-201ENST00000273317 SYCE3A1L190 88 aa9.28□□□□□ -0.92
LIMD1-201ENST00000273317 FCHSD2O94868 740 aa9.28□□□□□ -0.92
LIMD1-201ENST00000273317 GIGYF2Q6Y7W6 1299 aaKnown RBP9.28□□□□□ -0.92
LIMD1-201ENST00000273317 NUP133Q8WUM0 1156 aa9.28□□□□□ -0.92
LIMD1-201ENST00000273317 TAOK3Q9H2K8 898 aa9.28□□□□□ -0.92
LIMD1-201ENST00000273317 TICAM2Q86XR7 235 aa9.28□□□□□ -0.92
LIMD1-201ENST00000273317 RPAP2Q8IXW5 612 aaPredicted RBP9.28□□□□□ -0.92
LIMD1-201ENST00000273317 IFT140Q96RY7 1462 aa9.28□□□□□ -0.92
LIMD1-201ENST00000273317 MRC2Q9UBG0 1479 aa9.28□□□□□ -0.92
LIMD1-201ENST00000273317 NF2P35240 595 aa9.28□□□□□ -0.92
LIMD1-201ENST00000273317 ZNF530Q6P9A1 599 aaPredicted RBP9.28□□□□□ -0.92
LIMD1-201ENST00000273317 GPATCH11Q8N954 259 aa9.28□□□□□ -0.92
LIMD1-201ENST00000273317 FAM114A1Q8IWE2 563 aa9.28□□□□□ -0.92
LIMD1-201ENST00000273317 NCAPD3P42695 1498 aa9.28□□□□□ -0.92
LIMD1-201ENST00000273317 ZHX3Q9H4I2 956 aa9.28□□□□□ -0.92
LIMD1-201ENST00000273317 AQRO60306 1485 aaKnown RBP eCLIP9.28□□□□□ -0.922e-6■■■□□ 15.2
LIMD1-201ENST00000273317 CABP4P57796 275 aa9.27□□□□□ -0.92
LIMD1-201ENST00000273317 MAP2K1Q02750 393 aaPredicted RBP9.27□□□□□ -0.92
LIMD1-201ENST00000273317 BBXQ8WY36 941 aaPredicted RBP9.27□□□□□ -0.92
LIMD1-201ENST00000273317 RAB34Q9BZG1 259 aa9.27□□□□□ -0.92
LIMD1-201ENST00000273317 MAP3K1Q13233 1512 aa9.27□□□□□ -0.92
LIMD1-201ENST00000273317 NSD3Q9BZ95 1437 aa9.27□□□□□ -0.93
LIMD1-201ENST00000273317 NSD2O96028 1365 aa9.27□□□□□ -0.93
LIMD1-201ENST00000273317 TSR2Q969E8 191 aaKnown RBP9.27□□□□□ -0.93
LIMD1-201ENST00000273317 KIF20AO95235 890 aa9.27□□□□□ -0.93
LIMD1-201ENST00000273317 SPATA24Q86W54 205 aa9.27□□□□□ -0.93
LIMD1-201ENST00000273317 NAA15Q9BXJ9 866 aaKnown RBP9.27□□□□□ -0.93
LIMD1-201ENST00000273317 NEBLO76041 1014 aa9.27□□□□□ -0.93
LIMD1-201ENST00000273317 CCDC150Q8NCX0 1101 aa9.27□□□□□ -0.93
LIMD1-201ENST00000273317 CDCA7LQ96GN5 454 aa9.27□□□□□ -0.93
LIMD1-201ENST00000273317 AKAP2Q9Y2D5 859 aa9.27□□□□□ -0.93
LIMD1-201ENST00000273317 TOP1P11387 765 aaKnown RBP9.27□□□□□ -0.93
LIMD1-201ENST00000273317 MX1P20591 662 aa9.27□□□□□ -0.93
LIMD1-201ENST00000273317 FAM177A1Q8N128 213 aaPredicted RBP9.27□□□□□ -0.93
LIMD1-201ENST00000273317 POGZQ7Z3K3 1410 aa9.27□□□□□ -0.93
LIMD1-201ENST00000273317 USO1O60763 962 aaKnown RBP9.26□□□□□ -0.93
LIMD1-201ENST00000273317 YEATS4O95619 227 aa9.26□□□□□ -0.93
LIMD1-201ENST00000273317 IFFO1Q0D2I5 559 aa9.26□□□□□ -0.93
LIMD1-201ENST00000273317 CLIP2Q9UDT6 1046 aa9.26□□□□□ -0.93
LIMD1-201ENST00000273317 SRGAP3O43295 1099 aa9.26□□□□□ -0.93
LIMD1-201ENST00000273317 ATP2B2Q01814 1243 aa9.26□□□□□ -0.93
LIMD1-201ENST00000273317 DDX19AQ9NUU7 478 aaKnown RBP9.26□□□□□ -0.93
LIMD1-201ENST00000273317 CTTNBP2Q8WZ74 1663 aa9.26□□□□□ -0.93
LIMD1-201ENST00000273317 GLRX3O76003 335 aaKnown RBP9.26□□□□□ -0.93
LIMD1-201ENST00000273317 EHMT1Q9H9B1 1298 aa9.26□□□□□ -0.93
LIMD1-201ENST00000273317 KIF1BPQ96EK5 621 aa9.26□□□□□ -0.93
LIMD1-201ENST00000273317 ZNF76P36508 570 aa9.26□□□□□ -0.93
LIMD1-201ENST00000273317 PPP4R3AQ6IN85 833 aa9.26□□□□□ -0.93
LIMD1-201ENST00000273317 A0A087WZG4 1122 aa9.26□□□□□ -0.93
LIMD1-201ENST00000273317 DYNC1I1O14576 645 aa9.26□□□□□ -0.93
LIMD1-201ENST00000273317 MATR3P43243 847 aaKnown RBP eCLIP9.26□□□□□ -0.93
LIMD1-201ENST00000273317 SLC52A1Q9NWF4 448 aa9.26□□□□□ -0.93
LIMD1-201ENST00000273317 CAMSAP2Q08AD1 1489 aa9.26□□□□□ -0.93
LIMD1-201ENST00000273317 OSCARQ8IYS5 282 aa9.26□□□□□ -0.93
LIMD1-201ENST00000273317 ANKRD18BA2A2Z9 1011 aa9.25□□□□□ -0.93
LIMD1-201ENST00000273317 TMEM266Q2M3C6 531 aa9.25□□□□□ -0.93
LIMD1-201ENST00000273317 AIDAQ96BJ3 306 aa9.25□□□□□ -0.93
LIMD1-201ENST00000273317 NFE2L2Q16236 605 aa9.25□□□□□ -0.93
LIMD1-201ENST00000273317 HOOK3Q86VS8 718 aa9.25□□□□□ -0.93
LIMD1-201ENST00000273317 PRAM1Q96QH2 718 aa9.25□□□□□ -0.93
LIMD1-201ENST00000273317 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.25□□□□□ -0.93
LIMD1-201ENST00000273317 ANAPC15P60006 121 aa9.25□□□□□ -0.93
LIMD1-201ENST00000273317 SPECC1LQ69YQ0 1117 aa9.25□□□□□ -0.93
LIMD1-201ENST00000273317 CWC27Q6UX04 472 aaKnown RBP9.25□□□□□ -0.93
LIMD1-201ENST00000273317 CEP126Q9P2H0 1117 aa9.25□□□□□ -0.93
LIMD1-201ENST00000273317 CDK19Q9BWU1 502 aa9.25□□□□□ -0.93
LIMD1-201ENST00000273317 RALGAPBQ86X10 1494 aa9.25□□□□□ -0.93
LIMD1-201ENST00000273317 SSBP05455 408 aaKnown RBP eCLIP9.25□□□□□ -0.93
LIMD1-201ENST00000273317 IGHMBP2P38935 993 aaKnown RBP9.25□□□□□ -0.93
LIMD1-201ENST00000273317 SIL1Q9H173 461 aa9.25□□□□□ -0.93
LIMD1-201ENST00000273317 CCDC175P0C221 793 aa9.25□□□□□ -0.93
LIMD1-201ENST00000273317 PPM1EQ8WY54 764 aa9.25□□□□□ -0.93
LIMD1-201ENST00000273317 PRIMPOLQ96LW4 560 aa9.24□□□□□ -0.93
LIMD1-201ENST00000273317 KIF21AQ7Z4S6 1674 aa9.24□□□□□ -0.93
LIMD1-201ENST00000273317 ZNF644Q9H582 1327 aaPredicted RBP9.24□□□□□ -0.93
LIMD1-201ENST00000273317 BCAR3O75815 825 aa9.24□□□□□ -0.93
LIMD1-201ENST00000273317 UVSSAQ2YD98 709 aa9.24□□□□□ -0.93
LIMD1-201ENST00000273317 PAXBP1Q9Y5B6 917 aa9.24□□□□□ -0.93
LIMD1-201ENST00000273317 CCDC171Q6TFL3 1326 aa9.24□□□□□ -0.93
LIMD1-201ENST00000273317 SULT6B1Q6IMI4 303 aa9.24□□□□□ -0.93
LIMD1-201ENST00000273317 SSR1P43307 286 aaKnown RBP9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms