RNA–Protein interactions for RNA: ENST00000263897.9

USE1-201, Transcript of unconventional SNARE in the ER 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USE1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-201ENST00000263897 ITPK1Q13572 414 aa21.68■■□□□ 1.06
USE1-201ENST00000263897 AKAP4Q5JQC9 854 aa21.68■■□□□ 1.06
USE1-201ENST00000263897 NFATC2IPQ8NCF5 419 aa21.68■■□□□ 1.06
USE1-201ENST00000263897 LINC00116Q8NCU8 138 aa21.68■■□□□ 1.06
USE1-201ENST00000263897 C4BP0C0L5 1744 aa21.68■■□□□ 1.06
USE1-201ENST00000263897 COL24A1Q17RW2 1714 aa21.68■■□□□ 1.06
USE1-201ENST00000263897 RBM42Q9BTD8 480 aaKnown RBP21.66■■□□□ 1.06
USE1-201ENST00000263897 COL3A1P02461 1466 aaPredicted RBP21.65■■□□□ 1.06
USE1-201ENST00000263897 U2SURPO15042 1029 aaKnown RBP21.65■■□□□ 1.06
USE1-201ENST00000263897 AMIGO3Q86WK7 504 aa21.65■■□□□ 1.06
USE1-201ENST00000263897 SLC4A9Q96Q91 983 aa21.65■■□□□ 1.06
USE1-201ENST00000263897 MAP3K5Q99683 1374 aa21.64■■□□□ 1.06
USE1-201ENST00000263897 MTHFSDQ2M296 383 aaKnown RBP21.64■■□□□ 1.05
USE1-201ENST00000263897 LGR6Q9HBX8 967 aa21.64■■□□□ 1.05
USE1-201ENST00000263897 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.63■■□□□ 1.05
USE1-201ENST00000263897 SSFA2P28290 1259 aa21.63■■□□□ 1.05
USE1-201ENST00000263897 PPP2R1AP30153 589 aa21.63■■□□□ 1.05
USE1-201ENST00000263897 SMIM5Q71RC9 77 aa21.63■■□□□ 1.05
USE1-201ENST00000263897 CFAP53Q96M91 514 aa21.63■■□□□ 1.05
USE1-201ENST00000263897 UBR3Q6ZT12 1888 aa21.62■■□□□ 1.05
USE1-201ENST00000263897 SCN11AQ9UI33 1791 aa21.62■■□□□ 1.05
USE1-201ENST00000263897 MSL1Q68DK7 614 aa21.62■■□□□ 1.05
USE1-201ENST00000263897 RNMTO43148 476 aaKnown RBP21.61■■□□□ 1.05
USE1-201ENST00000263897 PHF14O94880 888 aa21.61■■□□□ 1.05
USE1-201ENST00000263897 SLC52A2Q9HAB3 445 aa21.61■■□□□ 1.05
USE1-201ENST00000263897 GNPATO15228 680 aa21.6■■□□□ 1.05
USE1-201ENST00000263897 PTCD1O75127 700 aaKnown RBP21.6■■□□□ 1.05
USE1-201ENST00000263897 RC3H1Q5TC82 1133 aaKnown RBP21.6■■□□□ 1.05
USE1-201ENST00000263897 ZNF831Q5JPB2 1677 aa21.6■■□□□ 1.05
USE1-201ENST00000263897 KLHL34Q8N239 644 aa21.59■■□□□ 1.05
USE1-201ENST00000263897 NUDCQ9Y266 331 aa21.58■■□□□ 1.05
USE1-201ENST00000263897 RTCBQ9Y3I0 505 aaKnown RBP21.57■■□□□ 1.04
USE1-201ENST00000263897 TRAPPC3LQ5T215 181 aa21.56■■□□□ 1.04
USE1-201ENST00000263897 CNTNAP4Q9C0A0 1308 aa21.55■■□□□ 1.04
USE1-201ENST00000263897 RPS6KA4O75676 772 aa21.55■■□□□ 1.04
USE1-201ENST00000263897 GAS2L2Q8NHY3 880 aa21.55■■□□□ 1.04
USE1-201ENST00000263897 PHACTR3Q96KR7 559 aa21.54■■□□□ 1.04
USE1-201ENST00000263897 RSPH6AQ9H0K4 717 aa21.54■■□□□ 1.04
USE1-201ENST00000263897 VIRMAQ69YN4 1812 aaKnown RBP21.54■■□□□ 1.04
USE1-201ENST00000263897 GNAT3A8MTJ3 354 aa21.53■■□□□ 1.04
USE1-201ENST00000263897 YY1P25490 414 aa21.53■■□□□ 1.04
USE1-201ENST00000263897 PRKAR2BP31323 418 aa21.53■■□□□ 1.04
USE1-201ENST00000263897 SLC39A6Q13433 755 aa21.53■■□□□ 1.04
USE1-201ENST00000263897 NLGN2Q8NFZ4 835 aa21.53■■□□□ 1.04
USE1-201ENST00000263897 MYH14Q7Z406 1995 aaKnown RBP21.53■■□□□ 1.04
USE1-201ENST00000263897 COL5A3P25940 1745 aaPredicted RBP21.52■■□□□ 1.04
USE1-201ENST00000263897 U2AF1L5P0DN76 240 aaPredicted RBP21.52■■□□□ 1.04
USE1-201ENST00000263897 ADRA2BP18089 450 aa21.52■■□□□ 1.04
USE1-201ENST00000263897 U2AF1Q01081 240 aaKnown RBP eCLIP21.52■■□□□ 1.04
USE1-201ENST00000263897 IL17REQ8NFR9 667 aa21.52■■□□□ 1.04
USE1-201ENST00000263897 ARHGEF1Q92888 912 aaKnown RBP21.52■■□□□ 1.04
USE1-201ENST00000263897 ADAMTS7Q9UKP4 1686 aa21.52■■□□□ 1.04
USE1-201ENST00000263897 MRC1P22897 1456 aa21.52■■□□□ 1.03
USE1-201ENST00000263897 FCHSD2O94868 740 aa21.51■■□□□ 1.03
USE1-201ENST00000263897 CRKLP46109 303 aaKnown RBP21.51■■□□□ 1.03
USE1-201ENST00000263897 GPR162Q16538 588 aa21.51■■□□□ 1.03
USE1-201ENST00000263897 CD2APQ9Y5K6 639 aa21.51■■□□□ 1.03
USE1-201ENST00000263897 DNAJC10Q8IXB1 793 aa21.49■■□□□ 1.03
USE1-201ENST00000263897 NLGN1Q8N2Q7 840 aa21.49■■□□□ 1.03
USE1-201ENST00000263897 RFC4P35249 363 aa21.48■■□□□ 1.03
USE1-201ENST00000263897 TEFQ10587 303 aa21.48■■□□□ 1.03
USE1-201ENST00000263897 INTS5Q6P9B9 1019 aaKnown RBP21.48■■□□□ 1.03
USE1-201ENST00000263897 TJP1Q07157 1748 aa21.46■■□□□ 1.03
USE1-201ENST00000263897 VSIG10Q8N0Z9 540 aa21.46■■□□□ 1.03
USE1-201ENST00000263897 CICQ96RK0 1608 aaPredicted RBP21.46■■□□□ 1.03
USE1-201ENST00000263897 MMP10P09238 476 aa21.45■■□□□ 1.02
USE1-201ENST00000263897 CYP19A1P11511 503 aaPredicted RBP21.45■■□□□ 1.02
USE1-201ENST00000263897 GYS1P13807 737 aa21.45■■□□□ 1.02
USE1-201ENST00000263897 DDX10Q13206 875 aaKnown RBP21.45■■□□□ 1.02
USE1-201ENST00000263897 PELP1Q8IZL8 1130 aaKnown RBP21.45■■□□□ 1.02
USE1-201ENST00000263897 CCDC87Q9NVE4 849 aa21.45■■□□□ 1.02
USE1-201ENST00000263897 TTC5Q8N0Z6 440 aa21.44■■□□□ 1.02
USE1-201ENST00000263897 CEMIPQ8WUJ3 1361 aa21.44■■□□□ 1.02
USE1-201ENST00000263897 KCPQ6ZWJ8 1503 aa21.44■■□□□ 1.02
USE1-201ENST00000263897 ZNF790Q6PG37 636 aa21.43■■□□□ 1.02
USE1-201ENST00000263897 CHD4Q14839 1912 aa21.43■■□□□ 1.02
USE1-201ENST00000263897 RALBP1Q15311 655 aa21.42■■□□□ 1.02
USE1-201ENST00000263897 ZNF496Q96IT1 587 aaPredicted RBP21.41■■□□□ 1.02
USE1-201ENST00000263897 GRIN3BO60391 1043 aa21.4■■□□□ 1.02
USE1-201ENST00000263897 YBX3P16989 372 aaKnown RBP eCLIP21.4■■□□□ 1.025e-7■■□□□ 12.5
USE1-201ENST00000263897 RTF1Q92541 710 aaKnown RBP21.4■■□□□ 1.02
USE1-201ENST00000263897 SRP68Q9UHB9 627 aaKnown RBP21.4■■□□□ 1.02
USE1-201ENST00000263897 SIPA1L3O60292 1781 aaPredicted RBP21.39■■□□□ 1.01
USE1-201ENST00000263897 UBR2Q8IWV8 1755 aa21.39■■□□□ 1.01
USE1-201ENST00000263897 SOS1Q07889 1333 aaPredicted RBP21.39■■□□□ 1.01
USE1-201ENST00000263897 USP42Q9H9J4 1324 aaKnown RBP21.39■■□□□ 1.01
USE1-201ENST00000263897 HTATSF1O43719 755 aaKnown RBP21.39■■□□□ 1.01
USE1-201ENST00000263897 TEX13AQ9BXU3 409 aaPredicted RBP21.39■■□□□ 1.01
USE1-201ENST00000263897 C4AP0C0L4 1744 aa21.38■■□□□ 1.01
USE1-201ENST00000263897 BTBD11A6QL63 1104 aa21.38■■□□□ 1.01
USE1-201ENST00000263897 STARD3NLO95772 234 aa21.38■■□□□ 1.01
USE1-201ENST00000263897 MCM10Q7L590 875 aa21.38■■□□□ 1.01
USE1-201ENST00000263897 ZBTB1Q9Y2K1 713 aa21.38■■□□□ 1.01
USE1-201ENST00000263897 PARP3Q9Y6F1 533 aa21.38■■□□□ 1.01
USE1-201ENST00000263897 ZPR1O75312 459 aa21.37■■□□□ 1.01
USE1-201ENST00000263897 NEFMP07197 916 aa21.37■■□□□ 1.01
USE1-201ENST00000263897 FKBP8Q14318 412 aa21.37■■□□□ 1.01
USE1-201ENST00000263897 FMNL2Q96PY5 1086 aa21.37■■□□□ 1.01
USE1-201ENST00000263897 HEG1Q9ULI3 1381 aa21.36■■□□□ 1.01
USE1-201ENST00000263897 KCNQ3O43525 872 aa21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms