RNA–Protein interactions for RNA: ENST00000260653.4

SIX3-201, Transcript of SIX homeobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX3, Length 2,523 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3-201ENST00000260653 EIF4A1P60842 406 aaKnown RBP28.39■■■□□ 2.14
SIX3-201ENST00000260653 NECTIN2Q92692 538 aa28.39■■■□□ 2.14
SIX3-201ENST00000260653 COL22A1Q8NFW1 1626 aaPredicted RBP28.39■■■□□ 2.13
SIX3-201ENST00000260653 SCN11AQ9UI33 1791 aa28.39■■■□□ 2.13
SIX3-201ENST00000260653 LARP1Q6PKG0 1096 aaKnown RBP28.38■■■□□ 2.13
SIX3-201ENST00000260653 SOS1Q07889 1333 aaPredicted RBP28.38■■■□□ 2.13
SIX3-201ENST00000260653 CYP27B1O15528 508 aa28.37■■■□□ 2.13
SIX3-201ENST00000260653 G2E3Q7L622 706 aa28.37■■■□□ 2.13
SIX3-201ENST00000260653 IFNL2Q8IZJ0 200 aa28.37■■■□□ 2.13
SIX3-201ENST00000260653 PTPRCP08575 1304 aa28.37■■■□□ 2.13
SIX3-201ENST00000260653 PARP4Q9UKK3 1724 aaKnown RBP28.37■■■□□ 2.13
SIX3-201ENST00000260653 CCDC30Q5VVM6 783 aa28.37■■■□□ 2.13
SIX3-201ENST00000260653 STK31Q9BXU1 1019 aa28.37■■■□□ 2.13
SIX3-201ENST00000260653 PHLPP1O60346 1717 aa28.36■■■□□ 2.13
SIX3-201ENST00000260653 EVA1CP58658 441 aa28.36■■■□□ 2.13
SIX3-201ENST00000260653 CARD10Q9BWT7 1032 aa28.36■■■□□ 2.13
SIX3-201ENST00000260653 ZBTB7BO15156 539 aaPredicted RBP28.35■■■□□ 2.13
SIX3-201ENST00000260653 COL16A1Q07092 1604 aaPredicted RBP28.35■■■□□ 2.13
SIX3-201ENST00000260653 RBM19Q9Y4C8 960 aaKnown RBP28.34■■■□□ 2.13
SIX3-201ENST00000260653 PIP4K2BP78356 416 aa28.34■■■□□ 2.13
SIX3-201ENST00000260653 BTG4Q9NY30 223 aa28.34■■■□□ 2.13
SIX3-201ENST00000260653 HDGFL1Q5TGJ6 251 aa28.33■■■□□ 2.13
SIX3-201ENST00000260653 RWDD1Q9H446 243 aaPredicted RBP28.33■■■□□ 2.13
SIX3-201ENST00000260653 CACNA1FO60840 1977 aa28.32■■■□□ 2.12
SIX3-201ENST00000260653 TOM1O60784 492 aa28.32■■■□□ 2.12
SIX3-201ENST00000260653 COL14A1Q05707 1796 aaKnown RBP28.31■■■□□ 2.12
SIX3-201ENST00000260653 SLC52A2Q9HAB3 445 aa28.31■■■□□ 2.12
SIX3-201ENST00000260653 INTS3Q68E01 1043 aaKnown RBP28.31■■■□□ 2.12
SIX3-201ENST00000260653 HOXB7P09629 217 aa28.3■■■□□ 2.12
SIX3-201ENST00000260653 IL2RBP14784 551 aa28.3■■■□□ 2.12
SIX3-201ENST00000260653 DCAF5Q96JK2 942 aa28.3■■■□□ 2.12
SIX3-201ENST00000260653 EIF2S2P20042 333 aaKnown RBP28.29■■■□□ 2.12
SIX3-201ENST00000260653 FLIIQ13045 1269 aa28.29■■■□□ 2.12
SIX3-201ENST00000260653 ZCRB1Q8TBF4 217 aaKnown RBP28.29■■■□□ 2.12
SIX3-201ENST00000260653 NFATC2IPQ8NCF5 419 aa28.28■■■□□ 2.12
SIX3-201ENST00000260653 CHMP4BQ9H444 224 aaKnown RBP28.28■■■□□ 2.12
SIX3-201ENST00000260653 USP35Q9P2H5 1018 aa28.28■■■□□ 2.12
SIX3-201ENST00000260653 C1orf115Q9H7X2 142 aa28.28■■■□□ 2.12
SIX3-201ENST00000260653 F6X3S4 739 aa28.27■■■□□ 2.12
SIX3-201ENST00000260653 MRC1P22897 1456 aa28.27■■■□□ 2.12
SIX3-201ENST00000260653 PCDH11XQ9BZA7 1347 aa28.27■■■□□ 2.12
SIX3-201ENST00000260653 PCDH11YQ9BZA8 1340 aa28.27■■■□□ 2.12
SIX3-201ENST00000260653 HDAC1Q13547 482 aaPredicted RBP28.27■■■□□ 2.12
SIX3-201ENST00000260653 HEG1Q9ULI3 1381 aa28.26■■■□□ 2.11
SIX3-201ENST00000260653 RGS3P49796 1198 aa28.26■■■□□ 2.11
SIX3-201ENST00000260653 HSP90AB1P08238 724 aaKnown RBP28.26■■■□□ 2.11
SIX3-201ENST00000260653 SLC39A6Q13433 755 aa28.26■■■□□ 2.11
SIX3-201ENST00000260653 FKBP5Q13451 457 aaPredicted RBP28.25■■■□□ 2.11
SIX3-201ENST00000260653 SHANK3Q9BYB0 1731 aa28.25■■■□□ 2.11
SIX3-201ENST00000260653 GIGYF1O75420 1035 aaPredicted RBP28.24■■■□□ 2.11
SIX3-201ENST00000260653 ZNF790Q6PG37 636 aa28.24■■■□□ 2.11
SIX3-201ENST00000260653 SLC4A10Q6U841 1118 aa28.23■■■□□ 2.11
SIX3-201ENST00000260653 CHPF2Q9P2E5 772 aa28.23■■■□□ 2.11
SIX3-201ENST00000260653 PRAMEF22A3QJZ6 481 aa28.22■■■□□ 2.11
SIX3-201ENST00000260653 UBAP1LF5GYI3 381 aa28.22■■■□□ 2.11
SIX3-201ENST00000260653 PHAXQ9H814 394 aaKnown RBP28.22■■■□□ 2.11
SIX3-201ENST00000260653 ADAMTS2O95450 1211 aa28.21■■■□□ 2.11
SIX3-201ENST00000260653 PDZRN3Q9UPQ7 1066 aa28.2■■■□□ 2.1
SIX3-201ENST00000260653 DDX54Q8TDD1 881 aaKnown RBP28.19■■■□□ 2.1
SIX3-201ENST00000260653 CABP4P57796 275 aa28.19■■■□□ 2.1
SIX3-201ENST00000260653 CHMP4AQ9BY43 222 aa28.19■■■□□ 2.1
SIX3-201ENST00000260653 PLCH1Q4KWH8 1693 aa28.18■■■□□ 2.1
SIX3-201ENST00000260653 ANXA1P04083 346 aa28.18■■■□□ 2.1
SIX3-201ENST00000260653 DAXXQ9UER7 740 aaPredicted RBP28.18■■■□□ 2.1
SIX3-201ENST00000260653 CCT4P50991 539 aaKnown RBP28.18■■■□□ 2.1
SIX3-201ENST00000260653 MEIS3Q99687 375 aa28.17■■■□□ 2.1
SIX3-201ENST00000260653 C5P01031 1676 aa28.16■■■□□ 2.1
SIX3-201ENST00000260653 SIRT2Q8IXJ6 389 aa28.16■■■□□ 2.1
SIX3-201ENST00000260653 SMC5Q8IY18 1101 aa28.16■■■□□ 2.1
SIX3-201ENST00000260653 NUTM2BA6NNL0 878 aaPredicted RBP28.15■■■□□ 2.1
SIX3-201ENST00000260653 NUTM2EB1AL46 878 aaPredicted RBP28.15■■■□□ 2.1
SIX3-201ENST00000260653 PDE4AP27815 886 aa28.15■■■□□ 2.1
SIX3-201ENST00000260653 NKX1-1Q15270 411 aaPredicted RBP28.15■■■□□ 2.1
SIX3-201ENST00000260653 NUTM2AQ8IVF1 878 aaPredicted RBP28.15■■■□□ 2.1
SIX3-201ENST00000260653 ZNF496Q96IT1 587 aaPredicted RBP28.15■■■□□ 2.1
SIX3-201ENST00000260653 DBF4Q9UBU7 674 aaPredicted RBP28.15■■■□□ 2.1
SIX3-201ENST00000260653 PROSER3Q2NL68 480 aa28.14■■■□□ 2.09
SIX3-201ENST00000260653 TTC5Q8N0Z6 440 aa28.14■■■□□ 2.09
SIX3-201ENST00000260653 DISP2A7MBM2 1401 aa28.13■■■□□ 2.09
SIX3-201ENST00000260653 N4BP2Q86UW6 1770 aaPredicted RBP28.13■■■□□ 2.09
SIX3-201ENST00000260653 PXDNLA1KZ92 1463 aa28.12■■■□□ 2.09
SIX3-201ENST00000260653 ATP10DQ9P241 1426 aa28.12■■■□□ 2.09
SIX3-201ENST00000260653 ERVV-2B6SEH9 535 aa28.11■■■□□ 2.09
SIX3-201ENST00000260653 BACH2Q9BYV9 841 aa28.11■■■□□ 2.09
SIX3-201ENST00000260653 NRAPQ86VF7 1730 aa28.1■■■□□ 2.09
SIX3-201ENST00000260653 TOGARAM1Q9Y4F4 1720 aa28.09■■■□□ 2.09
SIX3-201ENST00000260653 AEBP2Q6ZN18 517 aaPredicted RBP28.09■■■□□ 2.09
SIX3-201ENST00000260653 FMNL2Q96PY5 1086 aa28.09■■■□□ 2.09
SIX3-201ENST00000260653 GLI3P10071 1580 aa28.08■■■□□ 2.09
SIX3-201ENST00000260653 PI4KAP2A4QPH2 592 aa28.08■■■□□ 2.08
SIX3-201ENST00000260653 PI4KAP1Q8N8J0 262 aa28.08■■■□□ 2.08
SIX3-201ENST00000260653 WNK3Q9BYP7 1800 aa28.07■■■□□ 2.08
SIX3-201ENST00000260653 CEP85Q6P2H3 762 aa28.07■■■□□ 2.08
SIX3-201ENST00000260653 ADCY9O60503 1353 aa28.06■■■□□ 2.08
SIX3-201ENST00000260653 SNRPA1P09661 255 aaKnown RBP28.06■■■□□ 2.08
SIX3-201ENST00000260653 PDIA6Q15084 440 aa28.06■■■□□ 2.08
SIX3-201ENST00000260653 ANKRD44Q8N8A2 993 aa28.06■■■□□ 2.08
SIX3-201ENST00000260653 DDX21Q9NR30 783 aaKnown RBP eCLIP28.06■■■□□ 2.08
SIX3-201ENST00000260653 HYPKQ9NX55 129 aa28.05■■■□□ 2.08
SIX3-201ENST00000260653 DNAAF4Q8WXU2 420 aa28.05■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms