RNA–Protein interactions for RNA: ENST00000258733.8

GPNMB-201, Transcript of glycoprotein nmb, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene GPNMB, Length 2,862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-201ENST00000258733 UTP6Q9NYH9 597 aaKnown RBP9.19□□□□□ -0.94
GPNMB-201ENST00000258733 MAP3K1Q13233 1512 aa9.19□□□□□ -0.94
GPNMB-201ENST00000258733 RAPGEF2Q9Y4G8 1499 aa9.18□□□□□ -0.94
GPNMB-201ENST00000258733 FOSBP53539 338 aa9.18□□□□□ -0.94
GPNMB-201ENST00000258733 INF2Q27J81 1249 aa9.18□□□□□ -0.94
GPNMB-201ENST00000258733 SLC5A9Q2M3M2 681 aa9.18□□□□□ -0.94
GPNMB-201ENST00000258733 HHATQ5VTY9 493 aa9.18□□□□□ -0.94
GPNMB-201ENST00000258733 SMCR8Q8TEV9 937 aaPredicted RBP9.18□□□□□ -0.94
GPNMB-201ENST00000258733 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.18□□□□□ -0.94
GPNMB-201ENST00000258733 CCDC39Q9UFE4 941 aa9.18□□□□□ -0.94
GPNMB-201ENST00000258733 RABL2BQ9UNT1 228 aa9.18□□□□□ -0.94
GPNMB-201ENST00000258733 CRACR2AQ9BSW2 395 aa9.18□□□□□ -0.94
GPNMB-201ENST00000258733 TMOD4Q9NZQ9 345 aa9.18□□□□□ -0.94
GPNMB-201ENST00000258733 TPX2Q9ULW0 747 aaKnown RBP9.18□□□□□ -0.94
GPNMB-201ENST00000258733 SHTN1A0MZ66 631 aa9.18□□□□□ -0.94
GPNMB-201ENST00000258733 U2SURPO15042 1029 aaKnown RBP9.18□□□□□ -0.94
GPNMB-201ENST00000258733 C21orf2O43822 256 aa9.18□□□□□ -0.94
GPNMB-201ENST00000258733 MAGEA9P43362 315 aa9.18□□□□□ -0.94
GPNMB-201ENST00000258733 MMS22LQ6ZRQ5 1243 aa9.18□□□□□ -0.94
GPNMB-201ENST00000258733 EFCAB13Q8IY85 973 aa9.18□□□□□ -0.94
GPNMB-201ENST00000258733 TXLNBQ8N3L3 684 aa9.18□□□□□ -0.94
GPNMB-201ENST00000258733 KIF18AQ8NI77 898 aa9.18□□□□□ -0.94
GPNMB-201ENST00000258733 TAF4BQ92750 862 aa9.18□□□□□ -0.94
GPNMB-201ENST00000258733 SPATA32Q96LK8 384 aa9.18□□□□□ -0.94
GPNMB-201ENST00000258733 TACO1Q9BSH4 297 aaKnown RBP9.18□□□□□ -0.94
GPNMB-201ENST00000258733 PDZRN3Q9UPQ7 1066 aa9.18□□□□□ -0.94
GPNMB-201ENST00000258733 CTIFO43310 598 aaKnown RBP9.17□□□□□ -0.94
GPNMB-201ENST00000258733 C8orf34Q49A92 452 aa9.17□□□□□ -0.94
GPNMB-201ENST00000258733 UBA5Q9GZZ9 404 aa9.17□□□□□ -0.94
GPNMB-201ENST00000258733 TRPC1P48995 793 aa9.17□□□□□ -0.94
GPNMB-201ENST00000258733 MECOMQ03112 1051 aa9.17□□□□□ -0.94
GPNMB-201ENST00000258733 GPT2Q8TD30 523 aa9.17□□□□□ -0.94
GPNMB-201ENST00000258733 ZNF483Q8TF39 744 aaPredicted RBP9.17□□□□□ -0.94
GPNMB-201ENST00000258733 MAGEC2Q9UBF1 373 aaPredicted RBP9.17□□□□□ -0.94
GPNMB-201ENST00000258733 RRP15Q9Y3B9 282 aaKnown RBP9.17□□□□□ -0.94
GPNMB-201ENST00000258733 LMTK3Q96Q04 1460 aa9.17□□□□□ -0.94
GPNMB-201ENST00000258733 RABEP1Q15276 862 aa9.16□□□□□ -0.94
GPNMB-201ENST00000258733 RBBP5Q15291 538 aaKnown RBP9.16□□□□□ -0.94
GPNMB-201ENST00000258733 CCDC191Q8NCU4 936 aa9.16□□□□□ -0.94
GPNMB-201ENST00000258733 PLEKHG2Q9H7P9 1386 aa9.16□□□□□ -0.94
GPNMB-201ENST00000258733 KIF13AQ9H1H9 1805 aa9.16□□□□□ -0.94
GPNMB-201ENST00000258733 CUX1P39880 1505 aa9.16□□□□□ -0.94
GPNMB-201ENST00000258733 CREB3O43889 395 aa9.16□□□□□ -0.94
GPNMB-201ENST00000258733 AP1G2O75843 785 aa9.16□□□□□ -0.94
GPNMB-201ENST00000258733 XBP1P17861 261 aa9.16□□□□□ -0.94
GPNMB-201ENST00000258733 SLC7A5Q01650 507 aa9.16□□□□□ -0.94
GPNMB-201ENST00000258733 IRF5Q13568 498 aa9.16□□□□□ -0.94
GPNMB-201ENST00000258733 CCDC186Q7Z3E2 898 aa9.16□□□□□ -0.94
GPNMB-201ENST00000258733 RBM12BQ8IXT5 1001 aaKnown RBP9.16□□□□□ -0.94
GPNMB-201ENST00000258733 RNF214Q8ND24 703 aa9.16□□□□□ -0.94
GPNMB-201ENST00000258733 BICD1Q96G01 975 aa9.16□□□□□ -0.94
GPNMB-201ENST00000258733 PLEKHG4BQ96PX9 1271 aa9.16□□□□□ -0.94
GPNMB-201ENST00000258733 SPATS2LQ9NUQ6 558 aaKnown RBP9.16□□□□□ -0.94
GPNMB-201ENST00000258733 NUDCQ9Y266 331 aa9.16□□□□□ -0.94
GPNMB-201ENST00000258733 EIF4G3O43432 1585 aaKnown RBP9.15□□□□□ -0.94
GPNMB-201ENST00000258733 ABL2P42684 1182 aa9.15□□□□□ -0.94
GPNMB-201ENST00000258733 FAM163AQ96GL9 167 aaPredicted RBP9.15□□□□□ -0.94
GPNMB-201ENST00000258733 WDR97A6NE52 1622 aa9.15□□□□□ -0.94
GPNMB-201ENST00000258733 TIMM44O43615 452 aa9.15□□□□□ -0.94
GPNMB-201ENST00000258733 AKNAD1Q5T1N1 836 aa9.15□□□□□ -0.94
GPNMB-201ENST00000258733 CCDC70Q6NSX1 233 aa9.15□□□□□ -0.94
GPNMB-201ENST00000258733 CCDC85AQ96PX6 553 aaPredicted RBP9.15□□□□□ -0.94
GPNMB-201ENST00000258733 RETREG1Q9H6L5 497 aa9.15□□□□□ -0.94
GPNMB-201ENST00000258733 DIAPH3Q9NSV4 1193 aa9.15□□□□□ -0.94
GPNMB-201ENST00000258733 CFTRP13569 1480 aa9.15□□□□□ -0.95
GPNMB-201ENST00000258733 RRBP1Q9P2E9 1410 aaKnown RBP9.15□□□□□ -0.95
GPNMB-201ENST00000258733 KDM4FA0A1W2PPD8 638 aa9.14□□□□□ -0.95
GPNMB-201ENST00000258733 KIF5CO60282 957 aa9.14□□□□□ -0.95
GPNMB-201ENST00000258733 GRIK3Q13003 919 aa9.14□□□□□ -0.95
GPNMB-201ENST00000258733 SYCP1Q15431 976 aa9.14□□□□□ -0.95
GPNMB-201ENST00000258733 TRIM42Q8IWZ5 723 aa9.14□□□□□ -0.95
GPNMB-201ENST00000258733 LMCD1Q9NZU5 365 aa9.14□□□□□ -0.95
GPNMB-201ENST00000258733 CCDC175P0C221 793 aa9.14□□□□□ -0.95
GPNMB-201ENST00000258733 SKOR2Q2VWA4 1001 aaPredicted RBP9.14□□□□□ -0.95
GPNMB-201ENST00000258733 HSCBQ8IWL3 235 aa9.14□□□□□ -0.95
GPNMB-201ENST00000258733 STAG2Q8N3U4 1231 aa9.14□□□□□ -0.95
GPNMB-201ENST00000258733 KCNB2Q92953 911 aa9.14□□□□□ -0.95
GPNMB-201ENST00000258733 TEKT1Q969V4 418 aa9.14□□□□□ -0.95
GPNMB-201ENST00000258733 PHF23Q9BUL5 403 aaPredicted RBP9.14□□□□□ -0.95
GPNMB-201ENST00000258733 TRAIPQ9BWF2 469 aa9.14□□□□□ -0.95
GPNMB-201ENST00000258733 ZC3H4Q9UPT8 1303 aaKnown RBP9.14□□□□□ -0.95
GPNMB-201ENST00000258733 SNUPNO95149 360 aaKnown RBP9.14□□□□□ -0.95
GPNMB-201ENST00000258733 ZNF394Q53GI3 561 aa9.14□□□□□ -0.95
GPNMB-201ENST00000258733 LEKR1Q6ZMV7 388 aa9.14□□□□□ -0.95
GPNMB-201ENST00000258733 TEX11Q8IYF3 940 aa9.14□□□□□ -0.95
GPNMB-201ENST00000258733 NEK9Q8TD19 979 aa9.14□□□□□ -0.95
GPNMB-201ENST00000258733 FAM53CQ9NYF3 392 aa9.14□□□□□ -0.95
GPNMB-201ENST00000258733 ANKRD62A6NC57 917 aa9.13□□□□□ -0.95
GPNMB-201ENST00000258733 HTATSF1O43719 755 aaKnown RBP9.13□□□□□ -0.95
GPNMB-201ENST00000258733 FMNL1O95466 1100 aaPredicted RBP9.13□□□□□ -0.95
GPNMB-201ENST00000258733 LMNB1P20700 586 aa9.13□□□□□ -0.95
GPNMB-201ENST00000258733 EIF5P55010 431 aaKnown RBP9.13□□□□□ -0.95
GPNMB-201ENST00000258733 NCBP1Q09161 790 aaKnown RBP9.13□□□□□ -0.95
GPNMB-201ENST00000258733 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.13□□□□□ -0.95
GPNMB-201ENST00000258733 AGBL1Q96MI9 1066 aa9.13□□□□□ -0.95
GPNMB-201ENST00000258733 POLR3CQ9BUI4 534 aaPredicted RBP9.13□□□□□ -0.95
GPNMB-201ENST00000258733 TRIM6Q9C030 488 aaPredicted RBP9.13□□□□□ -0.95
GPNMB-201ENST00000258733 AKAP2Q9Y2D5 859 aa9.13□□□□□ -0.95
GPNMB-201ENST00000258733 IBTKQ9P2D0 1353 aaPredicted RBP9.13□□□□□ -0.95
GPNMB-201ENST00000258733 SOS1Q07889 1333 aaPredicted RBP9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms