RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 PDCL3Q9H2J4 239 aa10.26□□□□□ -0.77
PTCD3-201ENST00000254630 SLC5A1P13866 664 aa10.25□□□□□ -0.77
PTCD3-201ENST00000254630 ALDH1L2Q3SY69 923 aa10.25□□□□□ -0.77
PTCD3-201ENST00000254630 RPGRQ92834 1020 aaKnown RBP10.25□□□□□ -0.77
PTCD3-201ENST00000254630 ZNF287Q9HBT7 754 aa10.25□□□□□ -0.77
PTCD3-201ENST00000254630 AMOTL2Q9Y2J4 779 aa10.25□□□□□ -0.77
PTCD3-201ENST00000254630 ERLIN2O94905 339 aa10.25□□□□□ -0.77
PTCD3-201ENST00000254630 KIF1BPQ96EK5 621 aa10.25□□□□□ -0.77
PTCD3-201ENST00000254630 WASLO00401 505 aaPredicted RBP10.25□□□□□ -0.77
PTCD3-201ENST00000254630 ADAMTS2O95450 1211 aa10.25□□□□□ -0.77
PTCD3-201ENST00000254630 NOM1Q5C9Z4 860 aaKnown RBP10.25□□□□□ -0.77
PTCD3-201ENST00000254630 LUC7LQ9NQ29 371 aaKnown RBP10.25□□□□□ -0.77
PTCD3-201ENST00000254630 PHF8Q9UPP1 1060 aa10.25□□□□□ -0.77
PTCD3-201ENST00000254630 SMARCA5O60264 1052 aaPredicted RBP10.24□□□□□ -0.77
PTCD3-201ENST00000254630 DCTN1Q14203 1278 aa10.24□□□□□ -0.77
PTCD3-201ENST00000254630 HSP90AB3PQ58FF7 597 aa10.24□□□□□ -0.77
PTCD3-201ENST00000254630 EIF2AK4Q9P2K8 1649 aaKnown RBP10.24□□□□□ -0.77
PTCD3-201ENST00000254630 PAF1Q8N7H5 531 aa10.24□□□□□ -0.77
PTCD3-201ENST00000254630 SEPT11Q9NVA2 429 aaKnown RBP10.24□□□□□ -0.77
PTCD3-201ENST00000254630 NSD2O96028 1365 aa10.24□□□□□ -0.77
PTCD3-201ENST00000254630 CFAP45Q9UL16 551 aa10.24□□□□□ -0.77
PTCD3-201ENST00000254630 PPP6R1Q9UPN7 881 aa10.24□□□□□ -0.77
PTCD3-201ENST00000254630 DUOX2Q9NRD8 1548 aa10.24□□□□□ -0.77
PTCD3-201ENST00000254630 IFIT1P09914 478 aaKnown RBP10.24□□□□□ -0.77
PTCD3-201ENST00000254630 DZIP1Q86YF9 867 aaKnown RBP10.24□□□□□ -0.77
PTCD3-201ENST00000254630 CRACR2BQ8N4Y2 399 aaPredicted RBP10.24□□□□□ -0.77
PTCD3-201ENST00000254630 MX1P20591 662 aa10.24□□□□□ -0.77
PTCD3-201ENST00000254630 PTCD1O75127 700 aaKnown RBP10.23□□□□□ -0.77
PTCD3-201ENST00000254630 SSBP05455 408 aaKnown RBP eCLIP10.23□□□□□ -0.778e-30■■■□□ 15.2
PTCD3-201ENST00000254630 TNIP1Q15025 636 aa10.23□□□□□ -0.77
PTCD3-201ENST00000254630 BMP2KQ9NSY1 1161 aaPredicted RBP10.23□□□□□ -0.77
PTCD3-201ENST00000254630 CCDC181Q5TID7 509 aa10.23□□□□□ -0.77
PTCD3-201ENST00000254630 MPRIPQ6WCQ1 1025 aa10.23□□□□□ -0.77
PTCD3-201ENST00000254630 THUMPD2Q9BTF0 503 aaKnown RBP10.23□□□□□ -0.77
PTCD3-201ENST00000254630 ABCF2Q9UG63 623 aa10.23□□□□□ -0.77
PTCD3-201ENST00000254630 HYPKQ9NX55 129 aa10.23□□□□□ -0.77
PTCD3-201ENST00000254630 KDM5BQ9UGL1 1544 aa10.23□□□□□ -0.77
PTCD3-201ENST00000254630 DHX29Q7Z478 1369 aaKnown RBP10.23□□□□□ -0.77
PTCD3-201ENST00000254630 TTC21BQ7Z4L5 1316 aa10.23□□□□□ -0.77
PTCD3-201ENST00000254630 ANKRD18BA2A2Z9 1011 aa10.22□□□□□ -0.77
PTCD3-201ENST00000254630 KRT28Q7Z3Y7 464 aa10.22□□□□□ -0.77
PTCD3-201ENST00000254630 TEX14Q8IWB6 1497 aa10.22□□□□□ -0.77
PTCD3-201ENST00000254630 ADGRF5Q8IZF2 1346 aa10.22□□□□□ -0.77
PTCD3-201ENST00000254630 FBXO31Q5XUX0 539 aaPredicted RBP10.22□□□□□ -0.77
PTCD3-201ENST00000254630 IFIT5Q13325 482 aaKnown RBP10.22□□□□□ -0.77
PTCD3-201ENST00000254630 EXOC6BQ9Y2D4 811 aa10.22□□□□□ -0.77
PTCD3-201ENST00000254630 U3KPZ7 1027 aaPredicted RBP10.22□□□□□ -0.77
PTCD3-201ENST00000254630 NUP62CLQ9H1M0 184 aa10.21□□□□□ -0.77
PTCD3-201ENST00000254630 MKNK2Q9HBH9 465 aa10.21□□□□□ -0.77
PTCD3-201ENST00000254630 TRMT112Q9UI30 125 aaKnown RBP10.21□□□□□ -0.77
PTCD3-201ENST00000254630 MINDY4BA8MYZ0 360 aa10.21□□□□□ -0.77
PTCD3-201ENST00000254630 SMTNL1A8MU46 457 aa10.21□□□□□ -0.78
PTCD3-201ENST00000254630 DESP17661 470 aa10.21□□□□□ -0.78
PTCD3-201ENST00000254630 EMILIN1Q9Y6C2 1016 aa10.21□□□□□ -0.78
PTCD3-201ENST00000254630 PTPRCP08575 1304 aa10.21□□□□□ -0.78
PTCD3-201ENST00000254630 PRPF40BQ6NWY9 871 aaKnown RBP10.21□□□□□ -0.78
PTCD3-201ENST00000254630 TNRQ92752 1358 aa10.21□□□□□ -0.78
PTCD3-201ENST00000254630 SLF2Q8IX21 1173 aa10.21□□□□□ -0.78
PTCD3-201ENST00000254630 DDX11Q96FC9 970 aa10.21□□□□□ -0.78
PTCD3-201ENST00000254630 GLRX3O76003 335 aaKnown RBP10.2□□□□□ -0.78
PTCD3-201ENST00000254630 MAP3K12Q12852 859 aa10.2□□□□□ -0.78
PTCD3-201ENST00000254630 PLEKHH1Q9ULM0 1364 aa10.2□□□□□ -0.78
PTCD3-201ENST00000254630 BACH2Q9BYV9 841 aa10.2□□□□□ -0.78
PTCD3-201ENST00000254630 BOLA2Q9H3K6 86 aa10.2□□□□□ -0.78
PTCD3-201ENST00000254630 EHMT1Q9H9B1 1298 aa10.2□□□□□ -0.78
PTCD3-201ENST00000254630 TRIM21P19474 475 aaKnown RBP10.2□□□□□ -0.78
PTCD3-201ENST00000254630 CCDC184Q52MB2 194 aa10.2□□□□□ -0.78
PTCD3-201ENST00000254630 MAP3K2Q9Y2U5 619 aa10.2□□□□□ -0.78
PTCD3-201ENST00000254630 DNAAF4Q8WXU2 420 aa10.2□□□□□ -0.78
PTCD3-201ENST00000254630 CUL5Q93034 780 aa10.2□□□□□ -0.78
PTCD3-201ENST00000254630 NAPBQ9H115 298 aa10.2□□□□□ -0.78
PTCD3-201ENST00000254630 SYCP2Q9BX26 1530 aa10.2□□□□□ -0.78
PTCD3-201ENST00000254630 CCDC96Q2M329 555 aa10.19□□□□□ -0.78
PTCD3-201ENST00000254630 CCDC83Q8IWF9 413 aa10.19□□□□□ -0.78
PTCD3-201ENST00000254630 LRRFIP2Q9Y608 721 aaKnown RBP10.19□□□□□ -0.78
PTCD3-201ENST00000254630 ANKRD36BQ8N2N9 1353 aa10.19□□□□□ -0.78
PTCD3-201ENST00000254630 GOLGA6L10A6NI86 522 aa10.19□□□□□ -0.78
PTCD3-201ENST00000254630 SSRP1Q08945 709 aaKnown RBP10.19□□□□□ -0.78
PTCD3-201ENST00000254630 ANKRD18AQ8IVF6 992 aa10.19□□□□□ -0.78
PTCD3-201ENST00000254630 CWC15Q9P013 229 aaKnown RBP10.19□□□□□ -0.78
PTCD3-201ENST00000254630 ZNF608Q9ULD9 1512 aaPredicted RBP10.19□□□□□ -0.78
PTCD3-201ENST00000254630 PPP4R3AQ6IN85 833 aa10.19□□□□□ -0.78
PTCD3-201ENST00000254630 CFAP43Q8NDM7 1665 aa10.19□□□□□ -0.78
PTCD3-201ENST00000254630 EXOC5O00471 708 aa10.19□□□□□ -0.78
PTCD3-201ENST00000254630 TSG101Q99816 390 aa10.19□□□□□ -0.78
PTCD3-201ENST00000254630 CEBPAP49715 358 aaPredicted RBP10.19□□□□□ -0.78
PTCD3-201ENST00000254630 SEPT7Q16181 437 aaKnown RBP10.19□□□□□ -0.78
PTCD3-201ENST00000254630 DNAI2Q9GZS0 605 aa10.19□□□□□ -0.78
PTCD3-201ENST00000254630 IQCEQ6IPM2 695 aa10.18□□□□□ -0.78
PTCD3-201ENST00000254630 DISP3Q9P2K9 1392 aa10.18□□□□□ -0.78
PTCD3-201ENST00000254630 ZNF444Q8N0Y2 327 aaPredicted RBP10.18□□□□□ -0.78
PTCD3-201ENST00000254630 PEG3Q9GZU2 1588 aa10.18□□□□□ -0.78
PTCD3-201ENST00000254630 A0A087WZG4 1122 aa10.18□□□□□ -0.78
PTCD3-201ENST00000254630 ZNF397Q8NF99 534 aaPredicted RBP10.18□□□□□ -0.78
PTCD3-201ENST00000254630 UPF3BQ9BZI7 483 aaKnown RBP10.18□□□□□ -0.78
PTCD3-201ENST00000254630 PBRM1Q86U86 1689 aa10.18□□□□□ -0.78
PTCD3-201ENST00000254630 UGGT2Q9NYU1 1516 aa10.18□□□□□ -0.78
PTCD3-201ENST00000254630 NEBLO76041 1014 aa10.18□□□□□ -0.78
PTCD3-201ENST00000254630 HMGB1P09429 215 aaKnown RBP10.18□□□□□ -0.78
PTCD3-201ENST00000254630 PDIA4P13667 645 aaKnown RBP10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms