RNA–Protein interactions for RNA: ENST00000241312.8

CSMD2-201, Transcript of CUB and Sushi multiple domains 2, humanhuman

TSL 1 (best)

Gene CSMD2, Length 13,108 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD2-201ENST00000241312 ANAPC15P60006 121 aa7.85□□□□□ -1.15
CSMD2-201ENST00000241312 ZNF530Q6P9A1 599 aaPredicted RBP7.85□□□□□ -1.15
CSMD2-201ENST00000241312 IBSPP21815 317 aaPredicted RBP7.85□□□□□ -1.15
CSMD2-201ENST00000241312 SPECC1LQ69YQ0 1117 aa7.85□□□□□ -1.15
CSMD2-201ENST00000241312 CWC27Q6UX04 472 aaKnown RBP7.85□□□□□ -1.15
CSMD2-201ENST00000241312 TAOK3Q9H2K8 898 aa7.85□□□□□ -1.15
CSMD2-201ENST00000241312 STX1AQ16623 288 aa7.85□□□□□ -1.15
CSMD2-201ENST00000241312 CEP63Q96MT8 703 aa7.85□□□□□ -1.15
CSMD2-201ENST00000241312 SRGAP3O43295 1099 aa7.85□□□□□ -1.15
CSMD2-201ENST00000241312 ZNF644Q9H582 1327 aaPredicted RBP7.84□□□□□ -1.15
CSMD2-201ENST00000241312 MX1P20591 662 aa7.84□□□□□ -1.15
CSMD2-201ENST00000241312 CAMK4Q16566 473 aa7.84□□□□□ -1.15
CSMD2-201ENST00000241312 TSG101Q99816 390 aa7.84□□□□□ -1.15
CSMD2-201ENST00000241312 TOP1P11387 765 aaKnown RBP7.84□□□□□ -1.15
CSMD2-201ENST00000241312 ZNF287Q9HBT7 754 aa7.84□□□□□ -1.15
CSMD2-201ENST00000241312 CCDC196A0A1B0GTZ2 297 aa7.84□□□□□ -1.15
CSMD2-201ENST00000241312 FAM177BA6PVY3 158 aa7.84□□□□□ -1.15
CSMD2-201ENST00000241312 ABCC11Q96J66 1382 aa7.84□□□□□ -1.15
CSMD2-201ENST00000241312 YEATS4O95619 227 aa7.84□□□□□ -1.15
CSMD2-201ENST00000241312 MATR3P43243 847 aaKnown RBP eCLIP7.84□□□□□ -1.15
CSMD2-201ENST00000241312 TNIP1Q15025 636 aa7.84□□□□□ -1.15
CSMD2-201ENST00000241312 TMEM132EQ6IEE7 984 aa7.84□□□□□ -1.16
CSMD2-201ENST00000241312 AIDAQ96BJ3 306 aa7.84□□□□□ -1.16
CSMD2-201ENST00000241312 TRERF1Q96PN7 1200 aa7.84□□□□□ -1.16
CSMD2-201ENST00000241312 GIGYF2Q6Y7W6 1299 aaKnown RBP7.83□□□□□ -1.16
CSMD2-201ENST00000241312 CEP112Q8N8E3 955 aa7.83□□□□□ -1.16
CSMD2-201ENST00000241312 CTR9Q6PD62 1173 aa7.83□□□□□ -1.16
CSMD2-201ENST00000241312 NUP88Q99567 741 aaPredicted RBP7.83□□□□□ -1.16
CSMD2-201ENST00000241312 GOLGA4Q13439 2230 aaKnown RBP7.83□□□□□ -1.16
CSMD2-201ENST00000241312 PPM1EQ8WY54 764 aa7.83□□□□□ -1.16
CSMD2-201ENST00000241312 NAA15Q9BXJ9 866 aaKnown RBP7.83□□□□□ -1.16
CSMD2-201ENST00000241312 RAB34Q9BZG1 259 aa7.83□□□□□ -1.16
CSMD2-201ENST00000241312 DYNC1I1O14576 645 aa7.83□□□□□ -1.16
CSMD2-201ENST00000241312 C16orf45Q96MC5 204 aaPredicted RBP7.83□□□□□ -1.16
CSMD2-201ENST00000241312 DHX29Q7Z478 1369 aaKnown RBP7.83□□□□□ -1.16
CSMD2-201ENST00000241312 USO1O60763 962 aaKnown RBP7.83□□□□□ -1.16
CSMD2-201ENST00000241312 POLR3GO15318 223 aaPredicted RBP7.83□□□□□ -1.16
CSMD2-201ENST00000241312 FKBP4Q02790 459 aaKnown RBP eCLIP7.83□□□□□ -1.16
CSMD2-201ENST00000241312 KLHL34Q8N239 644 aa7.83□□□□□ -1.16
CSMD2-201ENST00000241312 ZFP91Q96JP5 570 aaPredicted RBP7.82□□□□□ -1.16
CSMD2-201ENST00000241312 CCDC113Q9H0I3 377 aa7.82□□□□□ -1.16
CSMD2-201ENST00000241312 ZNF76P36508 570 aa7.82□□□□□ -1.16
CSMD2-201ENST00000241312 CCDC150Q8NCX0 1101 aa7.82□□□□□ -1.16
CSMD2-201ENST00000241312 HMGB1P09429 215 aaKnown RBP7.82□□□□□ -1.16
CSMD2-201ENST00000241312 TATP17735 454 aaPredicted RBP7.82□□□□□ -1.16
CSMD2-201ENST00000241312 CCDC184Q52MB2 194 aa7.82□□□□□ -1.16
CSMD2-201ENST00000241312 SPG7Q9UQ90 795 aa7.82□□□□□ -1.16
CSMD2-201ENST00000241312 PPP4R3AQ6IN85 833 aa7.82□□□□□ -1.16
CSMD2-201ENST00000241312 DDX12PQ92771 950 aa7.82□□□□□ -1.16
CSMD2-201ENST00000241312 KIF20AO95235 890 aa7.82□□□□□ -1.16
CSMD2-201ENST00000241312 DDX19AQ9NUU7 478 aaKnown RBP7.82□□□□□ -1.16
CSMD2-201ENST00000241312 CEP126Q9P2H0 1117 aa7.82□□□□□ -1.16
CSMD2-201ENST00000241312 KIF4BQ2VIQ3 1234 aa7.82□□□□□ -1.16
CSMD2-201ENST00000241312 PRIMPOLQ96LW4 560 aa7.82□□□□□ -1.16
CSMD2-201ENST00000241312 RAB11FIP3O75154 756 aa7.81□□□□□ -1.16
CSMD2-201ENST00000241312 FAM114A1Q8IWE2 563 aa7.81□□□□□ -1.16
CSMD2-201ENST00000241312 SMARCC1Q92922 1105 aaPredicted RBP7.81□□□□□ -1.16
CSMD2-201ENST00000241312 CFAP65Q6ZU64 1925 aaKnown RBP7.81□□□□□ -1.16
CSMD2-201ENST00000241312 CETN1Q12798 172 aa7.81□□□□□ -1.16
CSMD2-201ENST00000241312 RAI14Q9P0K7 980 aa7.81□□□□□ -1.16
CSMD2-201ENST00000241312 GLRX3O76003 335 aaKnown RBP7.81□□□□□ -1.16
CSMD2-201ENST00000241312 FCHSD2O94868 740 aa7.81□□□□□ -1.16
CSMD2-201ENST00000241312 KLHL10Q6JEL2 608 aa7.81□□□□□ -1.16
CSMD2-201ENST00000241312 MACROD2A1Z1Q3 448 aa7.81□□□□□ -1.16
CSMD2-201ENST00000241312 PAFAH1B1P43034 410 aa7.81□□□□□ -1.16
CSMD2-201ENST00000241312 CBX1P83916 185 aa7.81□□□□□ -1.16
CSMD2-201ENST00000241312 TMEM266Q2M3C6 531 aa7.81□□□□□ -1.16
CSMD2-201ENST00000241312 ANKRD18BA2A2Z9 1011 aa7.81□□□□□ -1.16
CSMD2-201ENST00000241312 C6orf163Q5TEZ5 329 aa7.81□□□□□ -1.16
CSMD2-201ENST00000241312 RNF187Q5TA31 235 aaPredicted RBP7.81□□□□□ -1.16
CSMD2-201ENST00000241312 GOPCQ9HD26 462 aa7.81□□□□□ -1.16
CSMD2-201ENST00000241312 CCDC171Q6TFL3 1326 aa7.81□□□□□ -1.16
CSMD2-201ENST00000241312 PTPN23Q9H3S7 1636 aa7.81□□□□□ -1.16
CSMD2-201ENST00000241312 CABP4P57796 275 aa7.81□□□□□ -1.16
CSMD2-201ENST00000241312 XPCQ01831 940 aaPredicted RBP7.81□□□□□ -1.16
CSMD2-201ENST00000241312 CACNA2D4Q7Z3S7 1137 aa7.81□□□□□ -1.16
CSMD2-201ENST00000241312 C8orf76Q96K31 380 aa7.81□□□□□ -1.16
CSMD2-201ENST00000241312 SULT6B1Q6IMI4 303 aa7.8□□□□□ -1.16
CSMD2-201ENST00000241312 PIBF1Q8WXW3 757 aa7.8□□□□□ -1.16
CSMD2-201ENST00000241312 PYM1Q9BRP8 204 aaKnown RBP7.8□□□□□ -1.16
CSMD2-201ENST00000241312 TMX1Q9H3N1 280 aa7.8□□□□□ -1.16
CSMD2-201ENST00000241312 SPINK5Q9NQ38 1064 aaPredicted RBP7.8□□□□□ -1.16
CSMD2-201ENST00000241312 LRP2BPQ9P2M1 347 aa7.8□□□□□ -1.16
CSMD2-201ENST00000241312 FSD2A1L4K1 749 aa7.8□□□□□ -1.16
CSMD2-201ENST00000241312 CCDC178Q5BJE1 867 aa7.8□□□□□ -1.16
CSMD2-201ENST00000241312 KIF1BPQ96EK5 621 aa7.8□□□□□ -1.16
CSMD2-201ENST00000241312 RPAP2Q8IXW5 612 aaPredicted RBP7.8□□□□□ -1.16
CSMD2-201ENST00000241312 PRAM1Q96QH2 718 aa7.8□□□□□ -1.16
CSMD2-201ENST00000241312 RBM42Q9BTD8 480 aaKnown RBP7.8□□□□□ -1.16
CSMD2-201ENST00000241312 ANKS4BQ8N8V4 417 aa7.8□□□□□ -1.16
CSMD2-201ENST00000241312 CTNNBL1Q8WYA6 563 aaPredicted RBP7.8□□□□□ -1.16
CSMD2-201ENST00000241312 TOP2BQ02880 1626 aa7.8□□□□□ -1.16
CSMD2-201ENST00000241312 RTEL1-TNFRSF6BF6WH68 1400 aa7.8□□□□□ -1.16
CSMD2-201ENST00000241312 GOLGA8BA8MQT2 603 aa7.8□□□□□ -1.16
CSMD2-201ENST00000241312 HMGB2P26583 209 aaKnown RBP7.8□□□□□ -1.16
CSMD2-201ENST00000241312 IGHMBP2P38935 993 aaKnown RBP7.8□□□□□ -1.16
CSMD2-201ENST00000241312 AEBP2Q6ZN18 517 aaPredicted RBP7.8□□□□□ -1.16
CSMD2-201ENST00000241312 PRPF40BQ6NWY9 871 aaKnown RBP7.8□□□□□ -1.16
CSMD2-201ENST00000241312 FERMT3Q86UX7 667 aa7.8□□□□□ -1.16
CSMD2-201ENST00000241312 PAXBP1Q9Y5B6 917 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms