RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 TBX22Q9Y458 520 aa22.93■■□□□ 1.26
CPSF3-201ENST00000238112 NLRP6P59044 892 aa22.93■■□□□ 1.26
CPSF3-201ENST00000238112 CEBPAP49715 358 aaPredicted RBP22.92■■□□□ 1.26
CPSF3-201ENST00000238112 DIP2AQ14689 1571 aa22.92■■□□□ 1.26
CPSF3-201ENST00000238112 NECTIN2Q92692 538 aa22.92■■□□□ 1.26
CPSF3-201ENST00000238112 PKP1Q13835 747 aa22.91■■□□□ 1.26
CPSF3-201ENST00000238112 ZGPATQ8N5A5 531 aaKnown RBP22.91■■□□□ 1.26
CPSF3-201ENST00000238112 MX1P20591 662 aa22.91■■□□□ 1.26
CPSF3-201ENST00000238112 TSHZ3Q63HK5 1081 aa22.91■■□□□ 1.26
CPSF3-201ENST00000238112 ESPNB1AK53 854 aa22.9■■□□□ 1.26
CPSF3-201ENST00000238112 ATP8B2P98198 1209 aa22.9■■□□□ 1.26
CPSF3-201ENST00000238112 SOS1Q07889 1333 aaPredicted RBP22.9■■□□□ 1.26
CPSF3-201ENST00000238112 SALL3Q9BXA9 1300 aa22.9■■□□□ 1.26
CPSF3-201ENST00000238112 PIK3C2AO00443 1686 aa22.9■■□□□ 1.26
CPSF3-201ENST00000238112 AK9Q5TCS8 1911 aa22.89■■□□□ 1.26
CPSF3-201ENST00000238112 PNMA6EA0A0J9YXQ4 647 aa22.89■■□□□ 1.25
CPSF3-201ENST00000238112 NCLP19338 710 aaKnown RBP22.89■■□□□ 1.25
CPSF3-201ENST00000238112 MCCP23508 829 aa22.89■■□□□ 1.25
CPSF3-201ENST00000238112 HOXC9P31274 260 aa22.89■■□□□ 1.25
CPSF3-201ENST00000238112 NASPP49321 788 aaPredicted RBP22.89■■□□□ 1.25
CPSF3-201ENST00000238112 LRRC37A3O60309 1634 aa22.89■■□□□ 1.25
CPSF3-201ENST00000238112 ANP32BQ92688 251 aaKnown RBP22.88■■□□□ 1.25
CPSF3-201ENST00000238112 ESYT1Q9BSJ8 1104 aa22.88■■□□□ 1.25
CPSF3-201ENST00000238112 LMBRD1Q9NUN5 540 aa22.88■■□□□ 1.25
CPSF3-201ENST00000238112 MAP3K5Q99683 1374 aa22.88■■□□□ 1.25
CPSF3-201ENST00000238112 NEK4P51957 841 aa22.88■■□□□ 1.25
CPSF3-201ENST00000238112 TRIM6-TRIM34B2RNG4 842 aa22.87■■□□□ 1.25
CPSF3-201ENST00000238112 FAM208AQ9UK61 1670 aaKnown RBP22.87■■□□□ 1.25
CPSF3-201ENST00000238112 SLIT1O75093 1534 aa22.87■■□□□ 1.25
CPSF3-201ENST00000238112 RILPL2Q969X0 211 aa22.87■■□□□ 1.25
CPSF3-201ENST00000238112 LRRFIP2Q9Y608 721 aaKnown RBP22.87■■□□□ 1.25
CPSF3-201ENST00000238112 MCM2P49736 904 aa22.86■■□□□ 1.25
CPSF3-201ENST00000238112 CCDC173Q0VFZ6 552 aa22.86■■□□□ 1.25
CPSF3-201ENST00000238112 TAF7Q15545 349 aaPredicted RBP22.86■■□□□ 1.25
CPSF3-201ENST00000238112 NUTM2GQ5VZR2 741 aa22.86■■□□□ 1.25
CPSF3-201ENST00000238112 CAVIN1Q6NZI2 390 aaKnown RBP22.86■■□□□ 1.25
CPSF3-201ENST00000238112 SRCIN1Q9C0H9 1055 aa22.86■■□□□ 1.25
CPSF3-201ENST00000238112 BABAM1Q9NWV8 329 aa22.86■■□□□ 1.25
CPSF3-201ENST00000238112 ARHGAP23Q9P227 1491 aa22.86■■□□□ 1.25
CPSF3-201ENST00000238112 ZNF445P59923 1031 aa22.85■■□□□ 1.25
CPSF3-201ENST00000238112 IL17REQ8NFR9 667 aa22.85■■□□□ 1.25
CPSF3-201ENST00000238112 RGPD8O14715 1765 aaPredicted RBP22.85■■□□□ 1.25
CPSF3-201ENST00000238112 PLPPR3Q6T4P5 718 aa22.85■■□□□ 1.25
CPSF3-201ENST00000238112 LTV1Q96GA3 475 aaPredicted RBP22.85■■□□□ 1.25
CPSF3-201ENST00000238112 XRN1Q8IZH2 1706 aaKnown RBP22.84■■□□□ 1.25
CPSF3-201ENST00000238112 UBTFL1P0CB47 393 aaPredicted RBP22.84■■□□□ 1.25
CPSF3-201ENST00000238112 NAP1L5Q96NT1 182 aaPredicted RBP22.84■■□□□ 1.25
CPSF3-201ENST00000238112 ANO2Q9NQ90 1003 aa22.84■■□□□ 1.25
CPSF3-201ENST00000238112 ANKARQ7Z5J8 1434 aa22.84■■□□□ 1.25
CPSF3-201ENST00000238112 CHMLP26374 656 aa22.83■■□□□ 1.25
CPSF3-201ENST00000238112 TMX3Q96JJ7 454 aa22.83■■□□□ 1.25
CPSF3-201ENST00000238112 STAP2Q9UGK3 403 aa22.83■■□□□ 1.25
CPSF3-201ENST00000238112 ZDHHC9Q9Y397 364 aa22.83■■□□□ 1.25
CPSF3-201ENST00000238112 PXDNLA1KZ92 1463 aa22.83■■□□□ 1.25
CPSF3-201ENST00000238112 ERBB4Q15303 1308 aa22.83■■□□□ 1.25
CPSF3-201ENST00000238112 PRPF40AO75400 957 aaKnown RBP22.83■■□□□ 1.25
CPSF3-201ENST00000238112 ZSCAN23Q3MJ62 389 aa22.83■■□□□ 1.25
CPSF3-201ENST00000238112 ANAPC15P60006 121 aa22.82■■□□□ 1.24
CPSF3-201ENST00000238112 HDGFL1Q5TGJ6 251 aa22.82■■□□□ 1.24
CPSF3-201ENST00000238112 ABTB2Q8N961 1025 aa22.82■■□□□ 1.24
CPSF3-201ENST00000238112 USP44Q9H0E7 712 aa22.82■■□□□ 1.24
CPSF3-201ENST00000238112 THEMISQ8N1K5 641 aaPredicted RBP22.81■■□□□ 1.24
CPSF3-201ENST00000238112 NWD1Q149M9 1564 aa22.81■■□□□ 1.24
CPSF3-201ENST00000238112 PPP1R9BQ96SB3 815 aa22.81■■□□□ 1.24
CPSF3-201ENST00000238112 AOX1Q06278 1338 aa22.81■■□□□ 1.24
CPSF3-201ENST00000238112 PALD1Q9ULE6 856 aa22.79■■□□□ 1.24
CPSF3-201ENST00000238112 C14orf37Q86TY3 774 aa22.79■■□□□ 1.24
CPSF3-201ENST00000238112 CACNA1FO60840 1977 aa22.78■■□□□ 1.24
CPSF3-201ENST00000238112 TUBGCP6Q96RT7 1819 aa22.78■■□□□ 1.24
CPSF3-201ENST00000238112 SSH3Q8TE77 659 aa22.77■■□□□ 1.24
CPSF3-201ENST00000238112 IL1RAPL2Q9NP60 686 aa22.77■■□□□ 1.24
CPSF3-201ENST00000238112 RAB11FIP3O75154 756 aa22.77■■□□□ 1.24
CPSF3-201ENST00000238112 CUL4AQ13619 759 aa22.77■■□□□ 1.24
CPSF3-201ENST00000238112 USHBP1Q8N6Y0 703 aa22.77■■□□□ 1.24
CPSF3-201ENST00000238112 GPT2Q8TD30 523 aa22.77■■□□□ 1.24
CPSF3-201ENST00000238112 PHAXQ9H814 394 aaKnown RBP22.77■■□□□ 1.24
CPSF3-201ENST00000238112 KCNA6P17658 529 aa22.76■■□□□ 1.23
CPSF3-201ENST00000238112 FOXD4L5Q5VV16 416 aaPredicted RBP22.76■■□□□ 1.23
CPSF3-201ENST00000238112 UNC5CLQ8IV45 518 aa22.76■■□□□ 1.23
CPSF3-201ENST00000238112 FOXD4L4Q8WXT5 416 aaPredicted RBP22.76■■□□□ 1.23
CPSF3-201ENST00000238112 N4BP2Q86UW6 1770 aaPredicted RBP22.76■■□□□ 1.23
CPSF3-201ENST00000238112 NOL8Q76FK4 1167 aaKnown RBP22.75■■□□□ 1.23
CPSF3-201ENST00000238112 INTS4Q96HW7 963 aaKnown RBP22.75■■□□□ 1.23
CPSF3-201ENST00000238112 SURF6O75683 361 aaKnown RBP22.75■■□□□ 1.23
CPSF3-201ENST00000238112 PPP1R42Q7Z4L9 355 aa22.75■■□□□ 1.23
CPSF3-201ENST00000238112 NUTM1Q86Y26 1132 aa22.74■■□□□ 1.23
CPSF3-201ENST00000238112 RBM27Q9P2N5 1060 aaKnown RBP22.74■■□□□ 1.23
CPSF3-201ENST00000238112 EPB41L2O43491 1005 aaKnown RBP22.74■■□□□ 1.23
CPSF3-201ENST00000238112 BRD1O95696 1058 aa22.74■■□□□ 1.23
CPSF3-201ENST00000238112 EIF2S2P20042 333 aaKnown RBP22.74■■□□□ 1.23
CPSF3-201ENST00000238112 MARF1Q9Y4F3 1742 aaKnown RBP22.73■■□□□ 1.23
CPSF3-201ENST00000238112 IL17RAQ96F46 866 aa22.73■■□□□ 1.23
CPSF3-201ENST00000238112 MBD3O95983 291 aa22.73■■□□□ 1.23
CPSF3-201ENST00000238112 POLA2Q14181 598 aa22.73■■□□□ 1.23
CPSF3-201ENST00000238112 USP54Q70EL1 1684 aa22.72■■□□□ 1.23
CPSF3-201ENST00000238112 PRIM1P49642 420 aaKnown RBP22.72■■□□□ 1.23
CPSF3-201ENST00000238112 CHAMP1Q96JM3 812 aa22.72■■□□□ 1.23
CPSF3-201ENST00000238112 CHMP4AQ9BY43 222 aa22.72■■□□□ 1.23
CPSF3-201ENST00000238112 UPF3BQ9BZI7 483 aaKnown RBP22.72■■□□□ 1.23
CPSF3-201ENST00000238112 CEMIPQ8WUJ3 1361 aa22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms