Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC31.11■■■□□ 2.57
IFT140Q96RY7 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
IFT140Q96RY7 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC31.11■■■□□ 2.57
IFT140Q96RY7 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
IFT140Q96RY7 AC034236.2-201ENST00000606662 1610 ntBASIC31.1■■■□□ 2.57
IFT140Q96RY7 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
IFT140Q96RY7 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
IFT140Q96RY7 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC31.1■■■□□ 2.57
IFT140Q96RY7 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
IFT140Q96RY7 KRT18P3-201ENST00000451602 1288 ntBASIC31.1■■■□□ 2.57
IFT140Q96RY7 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC31.1■■■□□ 2.57
IFT140Q96RY7 AC021087.4-201ENST00000563761 564 ntBASIC31.1■■■□□ 2.57
IFT140Q96RY7 RPS15-207ENST00000591032 550 ntTSL 3 BASIC31.1■■■□□ 2.57
IFT140Q96RY7 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
IFT140Q96RY7 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
IFT140Q96RY7 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
IFT140Q96RY7 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC31.1■■■□□ 2.57
IFT140Q96RY7 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC31.09■■■□□ 2.57
IFT140Q96RY7 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
IFT140Q96RY7 RCN1P2-201ENST00000398357 915 ntBASIC31.09■■■□□ 2.57
IFT140Q96RY7 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC31.09■■■□□ 2.57
IFT140Q96RY7 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC31.09■■■□□ 2.57
IFT140Q96RY7 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
IFT140Q96RY7 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
IFT140Q96RY7 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC31.09■■■□□ 2.57
IFT140Q96RY7 MED16-201ENST00000269814 1199 ntTSL 5 BASIC31.08■■■□□ 2.57
IFT140Q96RY7 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
IFT140Q96RY7 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
IFT140Q96RY7 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC31.08■■■□□ 2.57
IFT140Q96RY7 AC012640.2-201ENST00000561606 901 ntBASIC31.08■■■□□ 2.57
IFT140Q96RY7 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC31.08■■■□□ 2.57
IFT140Q96RY7 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
IFT140Q96RY7 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
IFT140Q96RY7 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
IFT140Q96RY7 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
IFT140Q96RY7 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
IFT140Q96RY7 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC31.08■■■□□ 2.57
IFT140Q96RY7 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC31.08■■■□□ 2.57
IFT140Q96RY7 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC31.08■■■□□ 2.57
IFT140Q96RY7 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
IFT140Q96RY7 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
IFT140Q96RY7 DDT-206ENST00000430101 573 ntTSL 2 BASIC31.08■■■□□ 2.57
IFT140Q96RY7 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC31.08■■■□□ 2.57
IFT140Q96RY7 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC31.08■■■□□ 2.57
IFT140Q96RY7 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC31.08■■■□□ 2.57
IFT140Q96RY7 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
IFT140Q96RY7 DET1-207ENST00000564406 2315 ntTSL 2 BASIC31.07■■■□□ 2.56
IFT140Q96RY7 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
IFT140Q96RY7 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
IFT140Q96RY7 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC31.07■■■□□ 2.56
IFT140Q96RY7 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC31.07■■■□□ 2.56
IFT140Q96RY7 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC31.07■■■□□ 2.56
IFT140Q96RY7 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
IFT140Q96RY7 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
IFT140Q96RY7 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
IFT140Q96RY7 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
IFT140Q96RY7 PMP22-202ENST00000395936 816 ntTSL 3 BASIC31.07■■■□□ 2.56
IFT140Q96RY7 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
IFT140Q96RY7 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
IFT140Q96RY7 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC31.06■■■□□ 2.56
IFT140Q96RY7 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
IFT140Q96RY7 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC31.06■■■□□ 2.56
IFT140Q96RY7 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
IFT140Q96RY7 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC31.06■■■□□ 2.56
IFT140Q96RY7 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
IFT140Q96RY7 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC31.06■■■□□ 2.56
IFT140Q96RY7 COA5-202ENST00000409997 557 ntTSL 4 BASIC31.06■■■□□ 2.56
IFT140Q96RY7 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC31.06■■■□□ 2.56
IFT140Q96RY7 SART3-203ENST00000546611 1184 ntBASIC31.06■■■□□ 2.56
IFT140Q96RY7 MIR3687-2-201ENST00000577708 61 ntBASIC31.06■■■□□ 2.56
IFT140Q96RY7 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
IFT140Q96RY7 MIR3687-1-201ENST00000614492 61 ntBASIC31.06■■■□□ 2.56
IFT140Q96RY7 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC31.06■■■□□ 2.56
IFT140Q96RY7 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC31.06■■■□□ 2.56
IFT140Q96RY7 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC31.06■■■□□ 2.56
IFT140Q96RY7 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC31.06■■■□□ 2.56
IFT140Q96RY7 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC31.06■■■□□ 2.56
IFT140Q96RY7 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
IFT140Q96RY7 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC31.06■■■□□ 2.56
IFT140Q96RY7 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
IFT140Q96RY7 CYP51A1P1-201ENST00000492267 1507 ntBASIC31.05■■■□□ 2.56
IFT140Q96RY7 KATNBL1P6-202ENST00000562413 1466 ntBASIC31.05■■■□□ 2.56
IFT140Q96RY7 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC31.05■■■□□ 2.56
IFT140Q96RY7 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
IFT140Q96RY7 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC31.05■■■□□ 2.56
IFT140Q96RY7 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC31.05■■■□□ 2.56
IFT140Q96RY7 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC31.05■■■□□ 2.56
IFT140Q96RY7 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC31.05■■■□□ 2.56
IFT140Q96RY7 AC006333.2-201ENST00000607957 2099 ntBASIC31.05■■■□□ 2.56
IFT140Q96RY7 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
IFT140Q96RY7 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC31.05■■■□□ 2.56
IFT140Q96RY7 RNA5SP415-201ENST00000517246 115 ntBASIC31.05■■■□□ 2.56
IFT140Q96RY7 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
IFT140Q96RY7 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
IFT140Q96RY7 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
IFT140Q96RY7 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC31.05■■■□□ 2.56
IFT140Q96RY7 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC31.05■■■□□ 2.56
IFT140Q96RY7 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
IFT140Q96RY7 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC31.05■■■□□ 2.56
IFT140Q96RY7 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms