Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS13AQ96RL7 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS13AQ96RL7 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS13AQ96RL7 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS13AQ96RL7 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS13AQ96RL7 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC18.56■□□□□ 0.56
VPS13AQ96RL7 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.56■□□□□ 0.56
VPS13AQ96RL7 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.56■□□□□ 0.56
VPS13AQ96RL7 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.56■□□□□ 0.56
VPS13AQ96RL7 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.56■□□□□ 0.56
VPS13AQ96RL7 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VPS13AQ96RL7 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS13AQ96RL7 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.56■□□□□ 0.56
VPS13AQ96RL7 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS13AQ96RL7 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS13AQ96RL7 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS13AQ96RL7 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS13AQ96RL7 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC18.56■□□□□ 0.56
VPS13AQ96RL7 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
VPS13AQ96RL7 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC18.56■□□□□ 0.56
VPS13AQ96RL7 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.56■□□□□ 0.56
VPS13AQ96RL7 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS13AQ96RL7 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.55■□□□□ 0.56
VPS13AQ96RL7 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC18.55■□□□□ 0.56
VPS13AQ96RL7 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC18.55■□□□□ 0.56
VPS13AQ96RL7 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS13AQ96RL7 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS13AQ96RL7 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VPS13AQ96RL7 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS13AQ96RL7 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS13AQ96RL7 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.55■□□□□ 0.56
VPS13AQ96RL7 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS13AQ96RL7 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC18.55■□□□□ 0.56
VPS13AQ96RL7 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
VPS13AQ96RL7 LHX6-205ENST00000464484 666 ntTSL 2 BASIC18.55■□□□□ 0.56
VPS13AQ96RL7 AC112482.1-201ENST00000492080 688 ntBASIC18.55■□□□□ 0.56
VPS13AQ96RL7 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS13AQ96RL7 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS13AQ96RL7 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.55■□□□□ 0.56
VPS13AQ96RL7 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VPS13AQ96RL7 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS13AQ96RL7 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VPS13AQ96RL7 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
VPS13AQ96RL7 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
VPS13AQ96RL7 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.55■□□□□ 0.56
VPS13AQ96RL7 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS13AQ96RL7 AP006288.1-201ENST00000446065 395 ntBASIC18.54■□□□□ 0.56
VPS13AQ96RL7 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.54■□□□□ 0.56
VPS13AQ96RL7 AC008608.2-201ENST00000606089 416 ntBASIC18.54■□□□□ 0.56
VPS13AQ96RL7 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
VPS13AQ96RL7 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS13AQ96RL7 AL023284.2-201ENST00000405850 579 ntBASIC18.54■□□□□ 0.56
VPS13AQ96RL7 SCARNA2-201ENST00000458748 420 ntBASIC18.54■□□□□ 0.56
VPS13AQ96RL7 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS13AQ96RL7 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS13AQ96RL7 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
VPS13AQ96RL7 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.54■□□□□ 0.56
VPS13AQ96RL7 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VPS13AQ96RL7 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS13AQ96RL7 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS13AQ96RL7 WBP2-203ENST00000433525 928 ntTSL 2 BASIC18.54■□□□□ 0.56
VPS13AQ96RL7 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18.54■□□□□ 0.56
VPS13AQ96RL7 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.54■□□□□ 0.56
VPS13AQ96RL7 MIR3180-5-201ENST00000583743 153 ntBASIC18.54■□□□□ 0.56
VPS13AQ96RL7 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS13AQ96RL7 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.54■□□□□ 0.56
VPS13AQ96RL7 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.54■□□□□ 0.56
VPS13AQ96RL7 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
VPS13AQ96RL7 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
VPS13AQ96RL7 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
VPS13AQ96RL7 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS13AQ96RL7 ZNF259P1-201ENST00000407656 1365 ntBASIC18.53■□□□□ 0.56
VPS13AQ96RL7 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.53■□□□□ 0.56
VPS13AQ96RL7 COA5-202ENST00000409997 557 ntTSL 4 BASIC18.53■□□□□ 0.56
VPS13AQ96RL7 RPS8P6-201ENST00000426177 609 ntBASIC18.53■□□□□ 0.56
VPS13AQ96RL7 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC18.53■□□□□ 0.56
VPS13AQ96RL7 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VPS13AQ96RL7 AL356488.2-201ENST00000602755 427 ntBASIC18.53■□□□□ 0.56
VPS13AQ96RL7 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC18.53■□□□□ 0.56
VPS13AQ96RL7 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VPS13AQ96RL7 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
VPS13AQ96RL7 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS13AQ96RL7 VENTXP7-201ENST00000475503 772 ntBASIC18.53■□□□□ 0.56
VPS13AQ96RL7 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS13AQ96RL7 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.53■□□□□ 0.56
VPS13AQ96RL7 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.53■□□□□ 0.56
VPS13AQ96RL7 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VPS13AQ96RL7 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS13AQ96RL7 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
VPS13AQ96RL7 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.53■□□□□ 0.56
VPS13AQ96RL7 METTL21AP1-201ENST00000438852 635 ntBASIC18.52■□□□□ 0.56
VPS13AQ96RL7 MIR3687-2-201ENST00000577708 61 ntBASIC18.52■□□□□ 0.56
VPS13AQ96RL7 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.52■□□□□ 0.56
VPS13AQ96RL7 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
VPS13AQ96RL7 MIR3687-1-201ENST00000614492 61 ntBASIC18.52■□□□□ 0.56
VPS13AQ96RL7 AC124864.1-201ENST00000623408 392 ntBASIC18.52■□□□□ 0.56
VPS13AQ96RL7 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.52■□□□□ 0.56
VPS13AQ96RL7 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS13AQ96RL7 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.56
VPS13AQ96RL7 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms