Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
USHBP1Q8N6Y0 MIR564-202ENST00000385049 94 ntBASIC24.77■■□□□ 1.56
USHBP1Q8N6Y0 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC24.77■■□□□ 1.56
USHBP1Q8N6Y0 CIB2-208ENST00000560618 804 ntTSL 2 BASIC24.77■■□□□ 1.56
USHBP1Q8N6Y0 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC24.77■■□□□ 1.56
USHBP1Q8N6Y0 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
USHBP1Q8N6Y0 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC24.77■■□□□ 1.56
USHBP1Q8N6Y0 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
USHBP1Q8N6Y0 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC24.77■■□□□ 1.56
USHBP1Q8N6Y0 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
USHBP1Q8N6Y0 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC24.77■■□□□ 1.56
USHBP1Q8N6Y0 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC24.77■■□□□ 1.56
USHBP1Q8N6Y0 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
USHBP1Q8N6Y0 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC24.77■■□□□ 1.56
USHBP1Q8N6Y0 KRT8P32-201ENST00000512863 1461 ntBASIC24.77■■□□□ 1.56
USHBP1Q8N6Y0 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
USHBP1Q8N6Y0 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC24.76■■□□□ 1.55
USHBP1Q8N6Y0 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC24.76■■□□□ 1.55
USHBP1Q8N6Y0 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
USHBP1Q8N6Y0 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC24.76■■□□□ 1.55
USHBP1Q8N6Y0 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
USHBP1Q8N6Y0 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC24.76■■□□□ 1.55
USHBP1Q8N6Y0 PVRIG2P-201ENST00000435460 978 ntBASIC24.76■■□□□ 1.55
USHBP1Q8N6Y0 EMBP1-201ENST00000458200 901 ntBASIC24.76■■□□□ 1.55
USHBP1Q8N6Y0 TOB2P1-201ENST00000469761 992 ntBASIC24.76■■□□□ 1.55
USHBP1Q8N6Y0 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
USHBP1Q8N6Y0 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC24.76■■□□□ 1.55
USHBP1Q8N6Y0 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC24.76■■□□□ 1.55
USHBP1Q8N6Y0 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC24.76■■□□□ 1.55
USHBP1Q8N6Y0 UBQLN4P1-201ENST00000461599 1801 ntBASIC24.76■■□□□ 1.55
USHBP1Q8N6Y0 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC24.76■■□□□ 1.55
USHBP1Q8N6Y0 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
USHBP1Q8N6Y0 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
USHBP1Q8N6Y0 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC24.76■■□□□ 1.55
USHBP1Q8N6Y0 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC24.76■■□□□ 1.55
USHBP1Q8N6Y0 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC24.76■■□□□ 1.55
USHBP1Q8N6Y0 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC24.76■■□□□ 1.55
USHBP1Q8N6Y0 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
USHBP1Q8N6Y0 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
USHBP1Q8N6Y0 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
USHBP1Q8N6Y0 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 FEM1AP3-201ENST00000403722 1741 ntBASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 AP000347.1-202ENST00000435868 847 ntBASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 HOXB1-202ENST00000577092 1414 ntBASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
USHBP1Q8N6Y0 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC24.74■■□□□ 1.55
USHBP1Q8N6Y0 AC006333.2-201ENST00000607957 2099 ntBASIC24.74■■□□□ 1.55
USHBP1Q8N6Y0 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
USHBP1Q8N6Y0 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
USHBP1Q8N6Y0 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC24.74■■□□□ 1.55
USHBP1Q8N6Y0 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
USHBP1Q8N6Y0 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
USHBP1Q8N6Y0 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
USHBP1Q8N6Y0 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC24.74■■□□□ 1.55
USHBP1Q8N6Y0 AC004870.1-201ENST00000315132 882 ntBASIC24.74■■□□□ 1.55
USHBP1Q8N6Y0 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC24.74■■□□□ 1.55
USHBP1Q8N6Y0 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
USHBP1Q8N6Y0 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
USHBP1Q8N6Y0 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC24.74■■□□□ 1.55
USHBP1Q8N6Y0 DRAXINP1-201ENST00000437611 948 ntBASIC24.74■■□□□ 1.55
USHBP1Q8N6Y0 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC24.74■■□□□ 1.55
USHBP1Q8N6Y0 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC24.74■■□□□ 1.55
USHBP1Q8N6Y0 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC24.74■■□□□ 1.55
USHBP1Q8N6Y0 AC005332.3-201ENST00000589904 676 ntBASIC24.74■■□□□ 1.55
USHBP1Q8N6Y0 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
USHBP1Q8N6Y0 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
USHBP1Q8N6Y0 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
USHBP1Q8N6Y0 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC24.74■■□□□ 1.55
USHBP1Q8N6Y0 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
USHBP1Q8N6Y0 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
USHBP1Q8N6Y0 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
USHBP1Q8N6Y0 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
USHBP1Q8N6Y0 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
USHBP1Q8N6Y0 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC24.73■■□□□ 1.55
USHBP1Q8N6Y0 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms