Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
BEST3Q8N1M1 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
BEST3Q8N1M1 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
BEST3Q8N1M1 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.43■□□□□ 0.38
BEST3Q8N1M1 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
BEST3Q8N1M1 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BEST3Q8N1M1 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
BEST3Q8N1M1 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BEST3Q8N1M1 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
BEST3Q8N1M1 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BEST3Q8N1M1 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BEST3Q8N1M1 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
BEST3Q8N1M1 AL031133.1-201ENST00000406807 723 ntBASIC17.42■□□□□ 0.38
BEST3Q8N1M1 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
BEST3Q8N1M1 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC17.42■□□□□ 0.38
BEST3Q8N1M1 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.42■□□□□ 0.38
BEST3Q8N1M1 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.42■□□□□ 0.38
BEST3Q8N1M1 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.42■□□□□ 0.38
BEST3Q8N1M1 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.42■□□□□ 0.38
BEST3Q8N1M1 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
BEST3Q8N1M1 CR769767.2-201ENST00000622735 460 ntBASIC17.42■□□□□ 0.38
BEST3Q8N1M1 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC17.42■□□□□ 0.38
BEST3Q8N1M1 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
BEST3Q8N1M1 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BEST3Q8N1M1 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
BEST3Q8N1M1 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.42■□□□□ 0.38
BEST3Q8N1M1 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
BEST3Q8N1M1 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 NEK4P2-201ENST00000580004 1012 ntBASIC17.41■□□□□ 0.38
BEST3Q8N1M1 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 GPAT2P1-201ENST00000444924 1672 ntBASIC17.41■□□□□ 0.38
BEST3Q8N1M1 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
BEST3Q8N1M1 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 HCG11-201ENST00000411553 5696 ntBASIC17.4■□□□□ 0.38
BEST3Q8N1M1 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
BEST3Q8N1M1 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC17.39■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms