Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.92■□□□□ 0.78
CHD9Q3L8U1 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CHD9Q3L8U1 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHD9Q3L8U1 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.91■□□□□ 0.78
CHD9Q3L8U1 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC19.91■□□□□ 0.78
CHD9Q3L8U1 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC19.91■□□□□ 0.78
CHD9Q3L8U1 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC19.91■□□□□ 0.78
CHD9Q3L8U1 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.91■□□□□ 0.78
CHD9Q3L8U1 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CHD9Q3L8U1 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.91■□□□□ 0.78
CHD9Q3L8U1 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.91■□□□□ 0.78
CHD9Q3L8U1 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHD9Q3L8U1 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
CHD9Q3L8U1 GPX1P2-201ENST00000429271 606 ntBASIC19.91■□□□□ 0.78
CHD9Q3L8U1 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.91■□□□□ 0.78
CHD9Q3L8U1 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.91■□□□□ 0.78
CHD9Q3L8U1 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CHD9Q3L8U1 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHD9Q3L8U1 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
CHD9Q3L8U1 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CHD9Q3L8U1 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHD9Q3L8U1 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHD9Q3L8U1 GAS2L1P1-201ENST00000420145 1480 ntBASIC19.9■□□□□ 0.78
CHD9Q3L8U1 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CHD9Q3L8U1 SCARNA2-201ENST00000458748 420 ntBASIC19.9■□□□□ 0.78
CHD9Q3L8U1 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHD9Q3L8U1 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.9■□□□□ 0.78
CHD9Q3L8U1 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC19.9■□□□□ 0.78
CHD9Q3L8U1 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC19.9■□□□□ 0.78
CHD9Q3L8U1 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHD9Q3L8U1 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CHD9Q3L8U1 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CHD9Q3L8U1 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHD9Q3L8U1 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
CHD9Q3L8U1 AL109659.2-201ENST00000606809 1674 ntBASIC19.9■□□□□ 0.78
CHD9Q3L8U1 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CHD9Q3L8U1 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC19.9■□□□□ 0.78
CHD9Q3L8U1 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHD9Q3L8U1 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
CHD9Q3L8U1 AC096582.2-201ENST00000510860 516 ntBASIC19.9■□□□□ 0.78
CHD9Q3L8U1 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.9■□□□□ 0.78
CHD9Q3L8U1 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.9■□□□□ 0.78
CHD9Q3L8U1 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.9■□□□□ 0.78
CHD9Q3L8U1 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
CHD9Q3L8U1 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHD9Q3L8U1 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
CHD9Q3L8U1 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
CHD9Q3L8U1 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.89■□□□□ 0.78
CHD9Q3L8U1 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CHD9Q3L8U1 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC19.89■□□□□ 0.78
CHD9Q3L8U1 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
CHD9Q3L8U1 VENTXP7-201ENST00000475503 772 ntBASIC19.89■□□□□ 0.78
CHD9Q3L8U1 PRKN-208ENST00000610470 531 ntTSL 2 BASIC19.89■□□□□ 0.78
CHD9Q3L8U1 PRKN-209ENST00000612485 225 ntTSL 5 BASIC19.89■□□□□ 0.78
CHD9Q3L8U1 FAM215A-202ENST00000632077 792 ntBASIC19.89■□□□□ 0.78
CHD9Q3L8U1 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.89■□□□□ 0.77
CHD9Q3L8U1 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19.89■□□□□ 0.77
CHD9Q3L8U1 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CHD9Q3L8U1 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CHD9Q3L8U1 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC19.89■□□□□ 0.77
CHD9Q3L8U1 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
CHD9Q3L8U1 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
CHD9Q3L8U1 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
CHD9Q3L8U1 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC19.89■□□□□ 0.77
CHD9Q3L8U1 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CHD9Q3L8U1 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CHD9Q3L8U1 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC19.89■□□□□ 0.77
CHD9Q3L8U1 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC19.89■□□□□ 0.77
CHD9Q3L8U1 AC145285.3-201ENST00000564603 959 ntBASIC19.89■□□□□ 0.77
CHD9Q3L8U1 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC19.89■□□□□ 0.77
CHD9Q3L8U1 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CHD9Q3L8U1 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHD9Q3L8U1 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CHD9Q3L8U1 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CHD9Q3L8U1 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHD9Q3L8U1 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CHD9Q3L8U1 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
CHD9Q3L8U1 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC19.88■□□□□ 0.77
CHD9Q3L8U1 AC034105.1-201ENST00000563488 319 ntBASIC19.88■□□□□ 0.77
CHD9Q3L8U1 TEN1-204ENST00000588202 862 ntTSL 3 BASIC19.88■□□□□ 0.77
CHD9Q3L8U1 FAM197Y3-203ENST00000618346 717 ntBASIC19.88■□□□□ 0.77
CHD9Q3L8U1 AC116407.3-201ENST00000623905 1129 ntBASIC19.88■□□□□ 0.77
CHD9Q3L8U1 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CHD9Q3L8U1 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC19.88■□□□□ 0.77
CHD9Q3L8U1 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.88■□□□□ 0.77
CHD9Q3L8U1 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.88■□□□□ 0.77
CHD9Q3L8U1 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CHD9Q3L8U1 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CHD9Q3L8U1 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHD9Q3L8U1 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CHD9Q3L8U1 AC012640.2-201ENST00000561606 901 ntBASIC19.88■□□□□ 0.77
CHD9Q3L8U1 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC19.88■□□□□ 0.77
CHD9Q3L8U1 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.88■□□□□ 0.77
CHD9Q3L8U1 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC19.88■□□□□ 0.77
CHD9Q3L8U1 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC19.88■□□□□ 0.77
CHD9Q3L8U1 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CHD9Q3L8U1 AC134684.3-201ENST00000641758 218 ntBASIC19.88■□□□□ 0.77
CHD9Q3L8U1 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHD9Q3L8U1 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.88■□□□□ 0.77
CHD9Q3L8U1 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms