Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXA9P31269 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.55■□□□□ 0.72
HOXA9P31269 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.55■□□□□ 0.72
HOXA9P31269 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
HOXA9P31269 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXA9P31269 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXA9P31269 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HOXA9P31269 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC19.54■□□□□ 0.72
HOXA9P31269 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXA9P31269 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.54■□□□□ 0.72
HOXA9P31269 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXA9P31269 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC19.54■□□□□ 0.72
HOXA9P31269 TSPY19P-201ENST00000418461 509 ntBASIC19.54■□□□□ 0.72
HOXA9P31269 AC246785.2-201ENST00000432512 513 ntBASIC19.54■□□□□ 0.72
HOXA9P31269 TSPY18P-201ENST00000441642 509 ntBASIC19.54■□□□□ 0.72
HOXA9P31269 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC19.54■□□□□ 0.72
HOXA9P31269 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HOXA9P31269 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HOXA9P31269 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC19.54■□□□□ 0.72
HOXA9P31269 AC012615.1-201ENST00000565797 1299 ntBASIC19.54■□□□□ 0.72
HOXA9P31269 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HOXA9P31269 AC090616.6-201ENST00000582640 721 ntBASIC19.54■□□□□ 0.72
HOXA9P31269 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC19.54■□□□□ 0.72
HOXA9P31269 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC19.54■□□□□ 0.72
HOXA9P31269 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXA9P31269 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXA9P31269 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
HOXA9P31269 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC19.54■□□□□ 0.72
HOXA9P31269 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HOXA9P31269 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXA9P31269 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
HOXA9P31269 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.54■□□□□ 0.72
HOXA9P31269 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.54■□□□□ 0.72
HOXA9P31269 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXA9P31269 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
HOXA9P31269 PKD1P6-201ENST00000343738 4769 ntBASIC19.53■□□□□ 0.72
HOXA9P31269 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
HOXA9P31269 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
HOXA9P31269 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.53■□□□□ 0.72
HOXA9P31269 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HOXA9P31269 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.53■□□□□ 0.72
HOXA9P31269 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HOXA9P31269 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC19.53■□□□□ 0.72
HOXA9P31269 FDX1P1-201ENST00000449115 551 ntBASIC19.53■□□□□ 0.72
HOXA9P31269 UNC93B7-201ENST00000509439 705 ntBASIC19.53■□□□□ 0.72
HOXA9P31269 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.53■□□□□ 0.72
HOXA9P31269 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
HOXA9P31269 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC19.53■□□□□ 0.72
HOXA9P31269 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC19.53■□□□□ 0.72
HOXA9P31269 AL390719.2-201ENST00000606993 987 ntBASIC19.53■□□□□ 0.72
HOXA9P31269 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
HOXA9P31269 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HOXA9P31269 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HOXA9P31269 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.53■□□□□ 0.72
HOXA9P31269 Z83836.1-201ENST00000624605 1642 ntBASIC19.53■□□□□ 0.72
HOXA9P31269 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.53■□□□□ 0.72
HOXA9P31269 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HOXA9P31269 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HOXA9P31269 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
HOXA9P31269 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
HOXA9P31269 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HOXA9P31269 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.52■□□□□ 0.72
HOXA9P31269 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HOXA9P31269 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HOXA9P31269 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HOXA9P31269 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HOXA9P31269 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HOXA9P31269 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
HOXA9P31269 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.52■□□□□ 0.72
HOXA9P31269 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HOXA9P31269 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HOXA9P31269 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
HOXA9P31269 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.52■□□□□ 0.72
HOXA9P31269 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
HOXA9P31269 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC19.52■□□□□ 0.72
HOXA9P31269 AP003733.1-201ENST00000491725 852 ntBASIC19.52■□□□□ 0.72
HOXA9P31269 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC19.52■□□□□ 0.72
HOXA9P31269 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HOXA9P31269 AL121772.3-201ENST00000610840 674 ntBASIC19.52■□□□□ 0.72
HOXA9P31269 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC19.52■□□□□ 0.72
HOXA9P31269 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC19.52■□□□□ 0.72
HOXA9P31269 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC19.52■□□□□ 0.72
HOXA9P31269 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.52■□□□□ 0.72
HOXA9P31269 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.52■□□□□ 0.72
HOXA9P31269 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
HOXA9P31269 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
HOXA9P31269 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.51■□□□□ 0.71
HOXA9P31269 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HOXA9P31269 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HOXA9P31269 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
HOXA9P31269 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.51■□□□□ 0.71
HOXA9P31269 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HOXA9P31269 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
HOXA9P31269 AL845331.1-201ENST00000424978 1190 ntBASIC19.51■□□□□ 0.71
HOXA9P31269 LINC00265-3P-201ENST00000447588 903 ntBASIC19.51■□□□□ 0.71
HOXA9P31269 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.51■□□□□ 0.71
HOXA9P31269 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC19.51■□□□□ 0.71
HOXA9P31269 AC005332.3-201ENST00000589904 676 ntBASIC19.51■□□□□ 0.71
HOXA9P31269 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC19.51■□□□□ 0.71
HOXA9P31269 IFNL4P1-201ENST00000607083 540 ntBASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms