Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.15■□□□□ 0.5
LDLRP01130 BICD1-207ENST00000551848 1962 ntBASIC18.15■□□□□ 0.5
LDLRP01130 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LDLRP01130 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.15■□□□□ 0.5
LDLRP01130 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
LDLRP01130 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.15■□□□□ 0.5
LDLRP01130 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
LDLRP01130 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.15■□□□□ 0.5
LDLRP01130 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
LDLRP01130 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC18.15■□□□□ 0.5
LDLRP01130 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC18.15■□□□□ 0.5
LDLRP01130 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.15■□□□□ 0.5
LDLRP01130 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC18.15■□□□□ 0.5
LDLRP01130 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC18.15■□□□□ 0.5
LDLRP01130 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.15■□□□□ 0.5
LDLRP01130 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.15■□□□□ 0.5
LDLRP01130 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.15■□□□□ 0.5
LDLRP01130 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LDLRP01130 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC18.15■□□□□ 0.5
LDLRP01130 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.15■□□□□ 0.5
LDLRP01130 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LDLRP01130 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.15■□□□□ 0.5
LDLRP01130 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.15■□□□□ 0.5
LDLRP01130 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
LDLRP01130 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
LDLRP01130 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
LDLRP01130 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LDLRP01130 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LDLRP01130 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LDLRP01130 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LDLRP01130 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LDLRP01130 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
LDLRP01130 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LDLRP01130 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
LDLRP01130 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.14■□□□□ 0.5
LDLRP01130 HTR7P1-202ENST00000624664 4411 ntBASIC18.14■□□□□ 0.5
LDLRP01130 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
LDLRP01130 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
LDLRP01130 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LDLRP01130 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LDLRP01130 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LDLRP01130 AL354751.1-201ENST00000412768 1863 ntBASIC18.14■□□□□ 0.49
LDLRP01130 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LDLRP01130 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LDLRP01130 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.14■□□□□ 0.49
LDLRP01130 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
LDLRP01130 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LDLRP01130 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LDLRP01130 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.14■□□□□ 0.49
LDLRP01130 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.14■□□□□ 0.49
LDLRP01130 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.14■□□□□ 0.49
LDLRP01130 AC005829.2-201ENST00000571422 1056 ntBASIC18.14■□□□□ 0.49
LDLRP01130 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.14■□□□□ 0.49
LDLRP01130 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LDLRP01130 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
LDLRP01130 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LDLRP01130 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.14■□□□□ 0.49
LDLRP01130 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
LDLRP01130 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LDLRP01130 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LDLRP01130 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
LDLRP01130 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LDLRP01130 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
LDLRP01130 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.14■□□□□ 0.49
LDLRP01130 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LDLRP01130 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
LDLRP01130 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.14■□□□□ 0.49
LDLRP01130 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LDLRP01130 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LDLRP01130 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
LDLRP01130 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LDLRP01130 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.14■□□□□ 0.49
LDLRP01130 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.14■□□□□ 0.49
LDLRP01130 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LDLRP01130 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LDLRP01130 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.13■□□□□ 0.49
LDLRP01130 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
LDLRP01130 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LDLRP01130 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
LDLRP01130 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LDLRP01130 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LDLRP01130 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LDLRP01130 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LDLRP01130 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.13■□□□□ 0.49
LDLRP01130 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC18.13■□□□□ 0.49
LDLRP01130 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LDLRP01130 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.13■□□□□ 0.49
LDLRP01130 AL355355.2-201ENST00000442321 338 ntBASIC18.13■□□□□ 0.49
LDLRP01130 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.13■□□□□ 0.49
LDLRP01130 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.13■□□□□ 0.49
LDLRP01130 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
LDLRP01130 AC145285.6-201ENST00000604632 637 ntBASIC18.13■□□□□ 0.49
LDLRP01130 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.13■□□□□ 0.49
LDLRP01130 AC005363.2-201ENST00000618631 242 ntBASIC18.13■□□□□ 0.49
LDLRP01130 AC006557.6-201ENST00000623071 864 ntBASIC18.13■□□□□ 0.49
LDLRP01130 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.13■□□□□ 0.49
LDLRP01130 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LDLRP01130 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LDLRP01130 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LDLRP01130 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms