Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 Y_RNA.313-201ENST00000365095 103 ntBASIC-1.76□□□□□ -2.69
SEMA3DO95025 RNU6-402P-201ENST00000410678 103 ntBASIC-1.76□□□□□ -2.69
SEMA3DO95025 RNU6-267P-201ENST00000516714 103 ntBASIC-1.76□□□□□ -2.69
SEMA3DO95025 RNU6-557P-201ENST00000516842 110 ntBASIC-1.76□□□□□ -2.69
SEMA3DO95025 SNORD45.1-201ENST00000363181 77 ntBASIC-1.77□□□□□ -2.69
SEMA3DO95025 Y_RNA.282-201ENST00000364793 102 ntBASIC-1.77□□□□□ -2.69
SEMA3DO95025 AL031737.1-201ENST00000450125 223 ntBASIC-1.77□□□□□ -2.69
SEMA3DO95025 Y_RNA.109-201ENST00000363215 102 ntBASIC-1.78□□□□□ -2.69
SEMA3DO95025 RNU6-686P-201ENST00000364839 107 ntBASIC-1.78□□□□□ -2.69
SEMA3DO95025 RNU6-81P-201ENST00000365608 104 ntBASIC-1.78□□□□□ -2.69
SEMA3DO95025 RNU6-696P-201ENST00000390834 107 ntBASIC-1.78□□□□□ -2.69
SEMA3DO95025 RNU6-587P-201ENST00000391282 106 ntBASIC-1.78□□□□□ -2.69
SEMA3DO95025 MIR548BB-201ENST00000626714 66 ntBASIC-1.78□□□□□ -2.69
SEMA3DO95025 AC074348.1-201ENST00000426503 132 ntBASIC-1.79□□□□□ -2.7
SEMA3DO95025 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.79□□□□□ -2.7
SEMA3DO95025 Y_RNA.709-201ENST00000516952 92 ntBASIC-1.79□□□□□ -2.7
SEMA3DO95025 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.79□□□□□ -2.7
SEMA3DO95025 RNU6-834P-201ENST00000362367 110 ntBASIC-1.8□□□□□ -2.7
SEMA3DO95025 Y_RNA.186-201ENST00000363899 92 ntBASIC-1.8□□□□□ -2.7
SEMA3DO95025 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.8□□□□□ -2.7
SEMA3DO95025 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.8□□□□□ -2.7
SEMA3DO95025 RNU6-168P-201ENST00000516189 101 ntBASIC-1.8□□□□□ -2.7
SEMA3DO95025 MALAT1.1-201ENST00000618249 95 ntBASIC-1.8□□□□□ -2.7
SEMA3DO95025 RNU6-497P-201ENST00000365316 104 ntBASIC-1.81□□□□□ -2.7
SEMA3DO95025 Y_RNA.532-201ENST00000384590 113 ntBASIC-1.81□□□□□ -2.7
SEMA3DO95025 AP001318.4-201ENST00000616637 121 ntBASIC-1.81□□□□□ -2.7
SEMA3DO95025 MIRLET7A1-201ENST00000362295 80 ntBASIC-1.82□□□□□ -2.7
SEMA3DO95025 RNU6-1168P-201ENST00000390831 104 ntBASIC-1.82□□□□□ -2.7
SEMA3DO95025 RNU4-88P-201ENST00000411220 86 ntBASIC-1.82□□□□□ -2.7
SEMA3DO95025 U4.4-201ENST00000620626 117 ntBASIC-1.82□□□□□ -2.7
SEMA3DO95025 MIR429-201ENST00000362106 83 ntBASIC-1.83□□□□□ -2.7
SEMA3DO95025 RNU6-230P-201ENST00000362457 104 ntBASIC-1.83□□□□□ -2.7
SEMA3DO95025 RNU6-1079P-201ENST00000362861 110 ntBASIC-1.83□□□□□ -2.7
SEMA3DO95025 RNU6-698P-201ENST00000363523 107 ntBASIC-1.83□□□□□ -2.7
SEMA3DO95025 RNU6-598P-201ENST00000364017 105 ntBASIC-1.83□□□□□ -2.7
SEMA3DO95025 RNU6-34P-201ENST00000364874 107 ntBASIC-1.83□□□□□ -2.7
SEMA3DO95025 RNU6-630P-201ENST00000391258 106 ntBASIC-1.83□□□□□ -2.7
SEMA3DO95025 Y_RNA.611-201ENST00000410682 108 ntBASIC-1.83□□□□□ -2.7
SEMA3DO95025 SNORA40.13-201ENST00000516379 120 ntBASIC-1.83□□□□□ -2.7
SEMA3DO95025 MIR4484-201ENST00000582855 83 ntBASIC-1.83□□□□□ -2.7
SEMA3DO95025 MIR548V-201ENST00000584165 80 ntBASIC-1.83□□□□□ -2.7
SEMA3DO95025 Y_RNA.219-201ENST00000364232 113 ntBASIC-1.84□□□□□ -2.7
SEMA3DO95025 RNU6-22P-201ENST00000384355 107 ntBASIC-1.84□□□□□ -2.7
SEMA3DO95025 RNU6-129P-201ENST00000391022 107 ntBASIC-1.84□□□□□ -2.7
SEMA3DO95025 AC018880.2-201ENST00000414265 201 ntBASIC-1.84□□□□□ -2.7
SEMA3DO95025 RNU6-1121P-201ENST00000516802 109 ntBASIC-1.84□□□□□ -2.7
SEMA3DO95025 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.85□□□□□ -2.71
SEMA3DO95025 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.86□□□□□ -2.71
SEMA3DO95025 RNU6-1325P-201ENST00000364905 105 ntBASIC-1.86□□□□□ -2.71
SEMA3DO95025 RNU6-608P-201ENST00000383927 104 ntBASIC-1.86□□□□□ -2.71
SEMA3DO95025 TMSB4XP3-201ENST00000445144 114 ntBASIC-1.86□□□□□ -2.71
SEMA3DO95025 MIR630-201ENST00000384957 97 ntBASIC-1.87□□□□□ -2.71
SEMA3DO95025 MIR520D-201ENST00000385002 87 ntBASIC-1.87□□□□□ -2.71
SEMA3DO95025 U2.18-201ENST00000622185 84 ntBASIC-1.87□□□□□ -2.71
SEMA3DO95025 RNU6-1117P-201ENST00000384525 104 ntBASIC-1.88□□□□□ -2.71
SEMA3DO95025 RNU6-1154P-201ENST00000391001 104 ntBASIC-1.88□□□□□ -2.71
SEMA3DO95025 MTND4LP1-201ENST00000446263 157 ntBASIC-1.88□□□□□ -2.71
SEMA3DO95025 Y_RNA.397-201ENST00000383950 98 ntBASIC-1.89□□□□□ -2.71
SEMA3DO95025 RNY4P18-201ENST00000391107 89 ntBASIC-1.89□□□□□ -2.71
SEMA3DO95025 Y_RNA.566-201ENST00000384735 101 ntBASIC-1.9□□□□□ -2.71
SEMA3DO95025 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-1.9□□□□□ -2.71
SEMA3DO95025 RNU6-400P-201ENST00000391173 106 ntBASIC-1.9□□□□□ -2.71
SEMA3DO95025 MIR488-201ENST00000365739 83 ntBASIC-1.91□□□□□ -2.72
SEMA3DO95025 RNU6-1152P-201ENST00000384576 107 ntBASIC-1.91□□□□□ -2.72
SEMA3DO95025 MIR1297-201ENST00000637311 77 ntBASIC-1.91□□□□□ -2.72
SEMA3DO95025 AC006160.2-201ENST00000637708 154 ntBASIC-1.91□□□□□ -2.72
SEMA3DO95025 RNU6-668P-201ENST00000364180 107 ntBASIC-1.92□□□□□ -2.72
SEMA3DO95025 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.92□□□□□ -2.72
SEMA3DO95025 SNORD113-2-201ENST00000391082 72 ntBASIC-1.92□□□□□ -2.72
SEMA3DO95025 RNU6-803P-201ENST00000516034 102 ntBASIC-1.92□□□□□ -2.72
SEMA3DO95025 MIR3668-201ENST00000582138 75 ntBASIC-1.92□□□□□ -2.72
SEMA3DO95025 MIR548AM-201ENST00000584298 74 ntBASIC-1.92□□□□□ -2.72
SEMA3DO95025 RNU6-79P-201ENST00000362511 107 ntBASIC-1.93□□□□□ -2.72
SEMA3DO95025 RNU6-313P-201ENST00000516317 112 ntBASIC-1.93□□□□□ -2.72
SEMA3DO95025 SNORD113.1-201ENST00000363280 73 ntBASIC-1.94□□□□□ -2.72
SEMA3DO95025 RNA5SP215-201ENST00000363440 122 ntBASIC-1.94□□□□□ -2.72
SEMA3DO95025 RNU6-675P-201ENST00000384236 104 ntBASIC-1.94□□□□□ -2.72
SEMA3DO95025 MIR3671-201ENST00000580455 88 ntBASIC-1.94□□□□□ -2.72
SEMA3DO95025 MIR8053-201ENST00000613344 75 ntBASIC-1.95□□□□□ -2.72
SEMA3DO95025 SNORD45A-201ENST00000384512 84 ntBASIC-1.96□□□□□ -2.72
SEMA3DO95025 RNU6-380P-201ENST00000410207 107 ntBASIC-1.96□□□□□ -2.72
SEMA3DO95025 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.96□□□□□ -2.72
SEMA3DO95025 MIR3170-201ENST00000582699 77 ntBASIC-1.96□□□□□ -2.72
SEMA3DO95025 MIR664A-201ENST00000626086 82 ntBASIC-1.96□□□□□ -2.72
SEMA3DO95025 RNU6-640P-201ENST00000363693 105 ntBASIC-1.97□□□□□ -2.72
SEMA3DO95025 SNORD116-16-201ENST00000384533 92 ntBASIC-1.97□□□□□ -2.72
SEMA3DO95025 MT-TR-201ENST00000387439 65 ntBASIC-1.97□□□□□ -2.72
SEMA3DO95025 MIR548M-201ENST00000408260 86 ntBASIC-1.97□□□□□ -2.72
SEMA3DO95025 RNU6-844P-201ENST00000517175 102 ntBASIC-1.97□□□□□ -2.72
SEMA3DO95025 Y_RNA.273-201ENST00000364703 102 ntBASIC-1.98□□□□□ -2.73
SEMA3DO95025 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.98□□□□□ -2.73
SEMA3DO95025 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.98□□□□□ -2.73
SEMA3DO95025 MIR3123-201ENST00000583417 75 ntBASIC-1.98□□□□□ -2.73
SEMA3DO95025 SNORA41B-201ENST00000384785 128 ntBASIC-1.99□□□□□ -2.73
SEMA3DO95025 MIR548AA1-201ENST00000384971 97 ntBASIC-1.99□□□□□ -2.73
SEMA3DO95025 RNU6-695P-201ENST00000391157 104 ntBASIC-1.99□□□□□ -2.73
SEMA3DO95025 Y_RNA.17-201ENST00000362433 111 ntBASIC-2□□□□□ -2.73
SEMA3DO95025 RNU6-755P-201ENST00000364400 103 ntBASIC-2□□□□□ -2.73
SEMA3DO95025 snoMBII-202.2-201ENST00000517263 86 ntBASIC-2□□□□□ -2.73
SEMA3DO95025 MIR23C-201ENST00000579846 100 ntBASIC-2□□□□□ -2.73
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms