Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 RNU6-789P-201ENST00000517105 102 ntBASIC-0.95□□□□□ -2.56
CPSF3Q9UKF6 RNU6-219P-201ENST00000364728 107 ntBASIC-0.96□□□□□ -2.56
CPSF3Q9UKF6 SNORA62.4-201ENST00000365504 151 ntBASIC-0.96□□□□□ -2.56
CPSF3Q9UKF6 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.96□□□□□ -2.56
CPSF3Q9UKF6 SNORD116-22-201ENST00000384430 92 ntBASIC-0.96□□□□□ -2.56
CPSF3Q9UKF6 RNU6-1081P-201ENST00000384537 107 ntBASIC-0.96□□□□□ -2.56
CPSF3Q9UKF6 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.96□□□□□ -2.56
CPSF3Q9UKF6 RNU6-1108P-201ENST00000516308 104 ntBASIC-0.96□□□□□ -2.56
CPSF3Q9UKF6 AL353803.5-201ENST00000599815 141 ntBASIC-0.96□□□□□ -2.56
CPSF3Q9UKF6 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.97□□□□□ -2.56
CPSF3Q9UKF6 SNORD20-201ENST00000384550 80 ntBASIC-0.97□□□□□ -2.56
CPSF3Q9UKF6 RNU6-30P-201ENST00000384561 107 ntBASIC-0.97□□□□□ -2.56
CPSF3Q9UKF6 MIR521-2-201ENST00000384818 87 ntBASIC-0.97□□□□□ -2.56
CPSF3Q9UKF6 RNU6-406P-201ENST00000516470 107 ntBASIC-0.97□□□□□ -2.56
CPSF3Q9UKF6 RNU6-881P-201ENST00000516813 102 ntBASIC-0.97□□□□□ -2.56
CPSF3Q9UKF6 RNU6-640P-201ENST00000363693 105 ntBASIC-0.98□□□□□ -2.57
CPSF3Q9UKF6 RNU6-681P-201ENST00000364012 104 ntBASIC-0.98□□□□□ -2.57
CPSF3Q9UKF6 RNU6-497P-201ENST00000365316 104 ntBASIC-0.98□□□□□ -2.57
CPSF3Q9UKF6 MIR488-201ENST00000365739 83 ntBASIC-0.98□□□□□ -2.57
CPSF3Q9UKF6 RNU6-32P-201ENST00000383948 107 ntBASIC-0.98□□□□□ -2.57
CPSF3Q9UKF6 RNU6-147P-201ENST00000383983 107 ntBASIC-0.98□□□□□ -2.57
CPSF3Q9UKF6 RNU6-13P-201ENST00000384248 107 ntBASIC-0.98□□□□□ -2.57
CPSF3Q9UKF6 RNU6-12P-201ENST00000384604 107 ntBASIC-0.98□□□□□ -2.57
CPSF3Q9UKF6 RNU6-41P-201ENST00000384741 107 ntBASIC-0.98□□□□□ -2.57
CPSF3Q9UKF6 MIR1255B2-201ENST00000408618 67 ntBASIC-0.98□□□□□ -2.57
CPSF3Q9UKF6 RNU6-402P-201ENST00000410678 103 ntBASIC-0.98□□□□□ -2.57
CPSF3Q9UKF6 AP000533.3-201ENST00000447704 118 ntBASIC-0.98□□□□□ -2.57
CPSF3Q9UKF6 AC022137.1-201ENST00000483735 151 ntBASIC-0.98□□□□□ -2.57
CPSF3Q9UKF6 AC093729.1-201ENST00000513074 128 ntBASIC-0.98□□□□□ -2.57
CPSF3Q9UKF6 CYP3A54P-201ENST00000566950 75 ntBASIC-0.98□□□□□ -2.57
CPSF3Q9UKF6 MIR4464-201ENST00000580818 92 ntBASIC-0.98□□□□□ -2.57
CPSF3Q9UKF6 MIR6739-201ENST00000622461 75 ntBASIC-0.98□□□□□ -2.57
CPSF3Q9UKF6 RNU6-624P-201ENST00000363411 107 ntBASIC-0.99□□□□□ -2.57
CPSF3Q9UKF6 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.99□□□□□ -2.57
CPSF3Q9UKF6 AL035461.1-201ENST00000421490 332 ntBASIC-0.99□□□□□ -2.57
CPSF3Q9UKF6 RNU6-267P-201ENST00000516714 103 ntBASIC-0.99□□□□□ -2.57
CPSF3Q9UKF6 RNU6-919P-201ENST00000516731 104 ntBASIC-0.99□□□□□ -2.57
CPSF3Q9UKF6 Y_RNA.264-201ENST00000364665 102 ntBASIC-1□□□□□ -2.57
CPSF3Q9UKF6 Y_RNA.495-201ENST00000384435 112 ntBASIC-1□□□□□ -2.57
CPSF3Q9UKF6 MIR517B-201ENST00000385102 67 ntBASIC-1.01□□□□□ -2.57
CPSF3Q9UKF6 RNA5SP470-201ENST00000516463 106 ntBASIC-1.01□□□□□ -2.57
CPSF3Q9UKF6 AC140658.3-201ENST00000567603 271 ntBASIC-1.01□□□□□ -2.57
CPSF3Q9UKF6 MIR124-2-201ENST00000385081 109 ntBASIC-1.02□□□□□ -2.57
CPSF3Q9UKF6 RNA5SP67-201ENST00000516422 131 ntBASIC-1.02□□□□□ -2.57
CPSF3Q9UKF6 MIR548BB-201ENST00000626714 66 ntBASIC-1.02□□□□□ -2.57
CPSF3Q9UKF6 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.03□□□□□ -2.57
CPSF3Q9UKF6 RNU4-61P-201ENST00000411243 107 ntBASIC-1.03□□□□□ -2.57
CPSF3Q9UKF6 SCARNA20.2-201ENST00000516052 116 ntBASIC-1.03□□□□□ -2.57
CPSF3Q9UKF6 MIR6888-201ENST00000621977 67 ntBASIC-1.03□□□□□ -2.57
CPSF3Q9UKF6 RNY1P7-201ENST00000384743 110 ntBASIC-1.04□□□□□ -2.58
CPSF3Q9UKF6 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-1.04□□□□□ -2.58
CPSF3Q9UKF6 SNORD18.2-201ENST00000459604 70 ntBASIC-1.04□□□□□ -2.58
CPSF3Q9UKF6 MIR548AX-201ENST00000580117 73 ntBASIC-1.04□□□□□ -2.58
CPSF3Q9UKF6 AL445584.3-201ENST00000617173 78 ntBASIC-1.04□□□□□ -2.58
CPSF3Q9UKF6 RNA5SP476-201ENST00000516613 103 ntBASIC-1.05□□□□□ -2.58
CPSF3Q9UKF6 HAR1A.1-201ENST00000459583 118 ntBASIC-1.06□□□□□ -2.58
CPSF3Q9UKF6 RNU6-557P-201ENST00000516842 110 ntBASIC-1.07□□□□□ -2.58
CPSF3Q9UKF6 RNU6-675P-201ENST00000384236 104 ntBASIC-1.08□□□□□ -2.58
CPSF3Q9UKF6 MIR196A1-201ENST00000388006 70 ntBASIC-1.08□□□□□ -2.58
CPSF3Q9UKF6 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-1.08□□□□□ -2.58
CPSF3Q9UKF6 RNU6-44P-201ENST00000384045 107 ntBASIC-1.09□□□□□ -2.58
CPSF3Q9UKF6 Y_RNA.611-201ENST00000410682 108 ntBASIC-1.09□□□□□ -2.58
CPSF3Q9UKF6 RNU7-154P-201ENST00000516194 62 ntBASIC-1.09□□□□□ -2.58
CPSF3Q9UKF6 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.09□□□□□ -2.58
CPSF3Q9UKF6 MIR519A2-201ENST00000384990 87 ntBASIC-1.1□□□□□ -2.59
CPSF3Q9UKF6 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-1.1□□□□□ -2.59
CPSF3Q9UKF6 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.1□□□□□ -2.59
CPSF3Q9UKF6 RNU6-656P-201ENST00000516785 107 ntBASIC-1.1□□□□□ -2.59
CPSF3Q9UKF6 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.1□□□□□ -2.59
CPSF3Q9UKF6 RNU6-844P-201ENST00000517175 102 ntBASIC-1.1□□□□□ -2.59
CPSF3Q9UKF6 RNU6-518P-201ENST00000516056 96 ntBASIC-1.11□□□□□ -2.59
CPSF3Q9UKF6 SNORD114-25-201ENST00000363742 72 ntBASIC-1.12□□□□□ -2.59
CPSF3Q9UKF6 RNU6-303P-201ENST00000517091 106 ntBASIC-1.12□□□□□ -2.59
CPSF3Q9UKF6 MIR548AI-201ENST00000579940 88 ntBASIC-1.12□□□□□ -2.59
CPSF3Q9UKF6 RNU6-330P-201ENST00000363015 107 ntBASIC-1.13□□□□□ -2.59
CPSF3Q9UKF6 RNU6-478P-201ENST00000363904 110 ntBASIC-1.13□□□□□ -2.59
CPSF3Q9UKF6 Y_RNA.246-201ENST00000364495 108 ntBASIC-1.13□□□□□ -2.59
CPSF3Q9UKF6 RNU6-686P-201ENST00000364839 107 ntBASIC-1.13□□□□□ -2.59
CPSF3Q9UKF6 Y_RNA.291-201ENST00000364886 113 ntBASIC-1.13□□□□□ -2.59
CPSF3Q9UKF6 SCARNA21.1-201ENST00000515996 128 ntBASIC-1.13□□□□□ -2.59
CPSF3Q9UKF6 SNORD83B-201ENST00000386745 93 ntBASIC-1.14□□□□□ -2.59
CPSF3Q9UKF6 MIRLET7A1-201ENST00000362295 80 ntBASIC-1.15□□□□□ -2.59
CPSF3Q9UKF6 Y_RNA.17-201ENST00000362433 111 ntBASIC-1.15□□□□□ -2.59
CPSF3Q9UKF6 SNORD114-17-201ENST00000364699 75 ntBASIC-1.15□□□□□ -2.59
CPSF3Q9UKF6 AL021921.1-201ENST00000442774 93 ntBASIC-1.15□□□□□ -2.59
CPSF3Q9UKF6 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.16□□□□□ -2.6
CPSF3Q9UKF6 RNU6-645P-201ENST00000364649 106 ntBASIC-1.16□□□□□ -2.6
CPSF3Q9UKF6 Y_RNA.532-201ENST00000384590 113 ntBASIC-1.16□□□□□ -2.6
CPSF3Q9UKF6 RNU6-129P-201ENST00000391022 107 ntBASIC-1.16□□□□□ -2.6
CPSF3Q9UKF6 AC074348.1-201ENST00000426503 132 ntBASIC-1.16□□□□□ -2.6
CPSF3Q9UKF6 RNU6-168P-201ENST00000516189 101 ntBASIC-1.16□□□□□ -2.6
CPSF3Q9UKF6 MIR3675-201ENST00000583661 73 ntBASIC-1.16□□□□□ -2.6
CPSF3Q9UKF6 U2.22-201ENST00000636441 106 ntBASIC-1.16□□□□□ -2.6
CPSF3Q9UKF6 AC006160.2-201ENST00000637708 154 ntBASIC-1.16□□□□□ -2.6
CPSF3Q9UKF6 SNORA8.1-201ENST00000384250 140 ntBASIC-1.17□□□□□ -2.6
CPSF3Q9UKF6 SNORD57-201ENST00000448188 72 ntBASIC-1.17□□□□□ -2.6
CPSF3Q9UKF6 SCARNA17-201ENST00000516183 144 ntBASIC-1.17□□□□□ -2.6
CPSF3Q9UKF6 U2.7-201ENST00000619197 100 ntBASIC-1.17□□□□□ -2.6
CPSF3Q9UKF6 RNU6-924P-201ENST00000362926 108 ntBASIC-1.18□□□□□ -2.6
CPSF3Q9UKF6 RNU6-1131P-201ENST00000364955 107 ntBASIC-1.18□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 198.6 ms