Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AC009947.1-201ENST00000444350 727 ntBASIC19.1■□□□□ 0.65
TTC28Q96AY4 AC022494.1-201ENST00000466044 728 ntBASIC19.1■□□□□ 0.65
TTC28Q96AY4 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC19.1■□□□□ 0.65
TTC28Q96AY4 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TTC28Q96AY4 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC19.1■□□□□ 0.65
TTC28Q96AY4 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC19.1■□□□□ 0.65
TTC28Q96AY4 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
TTC28Q96AY4 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.1■□□□□ 0.65
TTC28Q96AY4 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TTC28Q96AY4 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TTC28Q96AY4 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TTC28Q96AY4 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC19.1■□□□□ 0.65
TTC28Q96AY4 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.1■□□□□ 0.65
TTC28Q96AY4 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC19.1■□□□□ 0.65
TTC28Q96AY4 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC19.1■□□□□ 0.65
TTC28Q96AY4 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC19.1■□□□□ 0.65
TTC28Q96AY4 AC010240.3-201ENST00000607688 395 ntBASIC19.1■□□□□ 0.65
TTC28Q96AY4 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC19.1■□□□□ 0.65
TTC28Q96AY4 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TTC28Q96AY4 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TTC28Q96AY4 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TTC28Q96AY4 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TTC28Q96AY4 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
TTC28Q96AY4 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TTC28Q96AY4 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TTC28Q96AY4 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TTC28Q96AY4 BAD-202ENST00000394531 631 ntTSL 3 BASIC19.09■□□□□ 0.65
TTC28Q96AY4 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TTC28Q96AY4 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC19.09■□□□□ 0.65
TTC28Q96AY4 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TTC28Q96AY4 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TTC28Q96AY4 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC19.09■□□□□ 0.65
TTC28Q96AY4 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TTC28Q96AY4 AL353692.3-201ENST00000407031 1396 ntBASIC19.09■□□□□ 0.65
TTC28Q96AY4 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TTC28Q96AY4 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TTC28Q96AY4 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TTC28Q96AY4 TSEN15P1-201ENST00000423257 515 ntBASIC19.09■□□□□ 0.65
TTC28Q96AY4 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC19.09■□□□□ 0.65
TTC28Q96AY4 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TTC28Q96AY4 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
TTC28Q96AY4 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.65
TTC28Q96AY4 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC19.08■□□□□ 0.65
TTC28Q96AY4 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TTC28Q96AY4 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
TTC28Q96AY4 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.08■□□□□ 0.65
TTC28Q96AY4 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC19.08■□□□□ 0.65
TTC28Q96AY4 RAB17-203ENST00000409576 466 ntTSL 3 BASIC19.08■□□□□ 0.65
TTC28Q96AY4 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC19.08■□□□□ 0.65
TTC28Q96AY4 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC19.08■□□□□ 0.65
TTC28Q96AY4 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC19.08■□□□□ 0.64
TTC28Q96AY4 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
TTC28Q96AY4 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TTC28Q96AY4 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
TTC28Q96AY4 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
TTC28Q96AY4 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
TTC28Q96AY4 KRT18P2-201ENST00000447938 1258 ntBASIC19.08■□□□□ 0.64
TTC28Q96AY4 AC105339.3-201ENST00000560043 636 ntBASIC19.08■□□□□ 0.64
TTC28Q96AY4 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.08■□□□□ 0.64
TTC28Q96AY4 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC19.08■□□□□ 0.64
TTC28Q96AY4 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
TTC28Q96AY4 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
TTC28Q96AY4 AL024507.2-201ENST00000606070 2574 ntBASIC19.07■□□□□ 0.64
TTC28Q96AY4 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TTC28Q96AY4 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TTC28Q96AY4 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TTC28Q96AY4 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TTC28Q96AY4 INIP-202ENST00000374236 874 ntTSL 2 BASIC19.07■□□□□ 0.64
TTC28Q96AY4 MCCD1P1-208ENST00000445732 328 ntBASIC19.07■□□□□ 0.64
TTC28Q96AY4 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TTC28Q96AY4 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TTC28Q96AY4 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
TTC28Q96AY4 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC19.07■□□□□ 0.64
TTC28Q96AY4 COX5A-206ENST00000568783 571 ntTSL 3 BASIC19.07■□□□□ 0.64
TTC28Q96AY4 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
TTC28Q96AY4 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TTC28Q96AY4 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TTC28Q96AY4 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC19.07■□□□□ 0.64
TTC28Q96AY4 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC19.07■□□□□ 0.64
TTC28Q96AY4 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC19.07■□□□□ 0.64
TTC28Q96AY4 OR7E14P-202ENST00000530490 1290 ntBASIC19.07■□□□□ 0.64
TTC28Q96AY4 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TTC28Q96AY4 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
TTC28Q96AY4 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
TTC28Q96AY4 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
TTC28Q96AY4 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TTC28Q96AY4 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TTC28Q96AY4 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC19.06■□□□□ 0.64
TTC28Q96AY4 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TTC28Q96AY4 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
TTC28Q96AY4 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TTC28Q96AY4 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC19.06■□□□□ 0.64
TTC28Q96AY4 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TTC28Q96AY4 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TTC28Q96AY4 AC079834.2-201ENST00000609776 1949 ntBASIC19.06■□□□□ 0.64
TTC28Q96AY4 HOXB1-202ENST00000577092 1414 ntBASIC19.06■□□□□ 0.64
TTC28Q96AY4 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TTC28Q96AY4 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TTC28Q96AY4 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
TTC28Q96AY4 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms