Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 FDX2-206ENST00000492239 773 ntTSL 2 BASIC16.66■□□□□ 0.26
SKA3Q8IX90 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SKA3Q8IX90 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC16.66■□□□□ 0.26
SKA3Q8IX90 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
SKA3Q8IX90 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC16.66■□□□□ 0.26
SKA3Q8IX90 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC16.66■□□□□ 0.26
SKA3Q8IX90 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SKA3Q8IX90 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SKA3Q8IX90 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
SKA3Q8IX90 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
SKA3Q8IX90 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SKA3Q8IX90 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
SKA3Q8IX90 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC16.66■□□□□ 0.26
SKA3Q8IX90 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC16.66■□□□□ 0.26
SKA3Q8IX90 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
SKA3Q8IX90 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC16.66■□□□□ 0.26
SKA3Q8IX90 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC16.65■□□□□ 0.26
SKA3Q8IX90 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC16.65■□□□□ 0.26
SKA3Q8IX90 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SKA3Q8IX90 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SKA3Q8IX90 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SKA3Q8IX90 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SKA3Q8IX90 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SKA3Q8IX90 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC16.65■□□□□ 0.26
SKA3Q8IX90 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SKA3Q8IX90 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
SKA3Q8IX90 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SKA3Q8IX90 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC16.65■□□□□ 0.26
SKA3Q8IX90 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SKA3Q8IX90 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SKA3Q8IX90 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SKA3Q8IX90 CRYGFP-201ENST00000418459 633 ntBASIC16.65■□□□□ 0.26
SKA3Q8IX90 TSPY15P-201ENST00000457163 923 ntBASIC16.65■□□□□ 0.26
SKA3Q8IX90 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC16.65■□□□□ 0.26
SKA3Q8IX90 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SKA3Q8IX90 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC16.65■□□□□ 0.26
SKA3Q8IX90 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC16.65■□□□□ 0.26
SKA3Q8IX90 SNX21-213ENST00000614929 587 ntTSL 5 BASIC16.65■□□□□ 0.26
SKA3Q8IX90 AC079598.2-202ENST00000546624 1451 ntBASIC16.65■□□□□ 0.26
SKA3Q8IX90 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SKA3Q8IX90 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SKA3Q8IX90 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC16.65■□□□□ 0.26
SKA3Q8IX90 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SKA3Q8IX90 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
SKA3Q8IX90 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.65■□□□□ 0.26
SKA3Q8IX90 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC16.65■□□□□ 0.26
SKA3Q8IX90 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SKA3Q8IX90 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.26
SKA3Q8IX90 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.26
SKA3Q8IX90 AC096733.2-201ENST00000609937 1394 ntBASIC16.64■□□□□ 0.26
SKA3Q8IX90 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.26
SKA3Q8IX90 LTB4R2-202ENST00000528054 3092 ntBASIC16.64■□□□□ 0.25
SKA3Q8IX90 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC16.64■□□□□ 0.25
SKA3Q8IX90 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC16.64■□□□□ 0.25
SKA3Q8IX90 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC16.64■□□□□ 0.25
SKA3Q8IX90 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SKA3Q8IX90 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SKA3Q8IX90 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SKA3Q8IX90 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SKA3Q8IX90 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SKA3Q8IX90 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC16.64■□□□□ 0.25
SKA3Q8IX90 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC16.64■□□□□ 0.25
SKA3Q8IX90 MFAP1P1-201ENST00000442257 1255 ntBASIC16.64■□□□□ 0.25
SKA3Q8IX90 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC16.64■□□□□ 0.25
SKA3Q8IX90 GRAMD4P8-201ENST00000605465 1115 ntBASIC16.64■□□□□ 0.25
SKA3Q8IX90 AP000525.1-201ENST00000608286 694 ntBASIC16.64■□□□□ 0.25
SKA3Q8IX90 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
SKA3Q8IX90 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC16.64■□□□□ 0.25
SKA3Q8IX90 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SKA3Q8IX90 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC16.64■□□□□ 0.25
SKA3Q8IX90 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SKA3Q8IX90 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SKA3Q8IX90 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SKA3Q8IX90 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SKA3Q8IX90 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SKA3Q8IX90 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SKA3Q8IX90 NEFHP1-201ENST00000412845 2629 ntBASIC16.64■□□□□ 0.25
SKA3Q8IX90 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SKA3Q8IX90 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC16.64■□□□□ 0.25
SKA3Q8IX90 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SKA3Q8IX90 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SKA3Q8IX90 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SKA3Q8IX90 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SKA3Q8IX90 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC16.63■□□□□ 0.25
SKA3Q8IX90 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC16.63■□□□□ 0.25
SKA3Q8IX90 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
SKA3Q8IX90 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SKA3Q8IX90 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC16.63■□□□□ 0.25
SKA3Q8IX90 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
SKA3Q8IX90 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
SKA3Q8IX90 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SKA3Q8IX90 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SKA3Q8IX90 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SKA3Q8IX90 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC16.63■□□□□ 0.25
SKA3Q8IX90 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SKA3Q8IX90 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SKA3Q8IX90 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SKA3Q8IX90 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC16.63■□□□□ 0.25
SKA3Q8IX90 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SKA3Q8IX90 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms