Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.4■□□□□ 0.54
PTCHD3Q3KNS1 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
PTCHD3Q3KNS1 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTCHD3Q3KNS1 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.4■□□□□ 0.54
PTCHD3Q3KNS1 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.4■□□□□ 0.54
PTCHD3Q3KNS1 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTCHD3Q3KNS1 AC145285.6-201ENST00000604632 637 ntBASIC18.4■□□□□ 0.54
PTCHD3Q3KNS1 AC010947.1-201ENST00000623454 693 ntBASIC18.4■□□□□ 0.54
PTCHD3Q3KNS1 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTCHD3Q3KNS1 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PTCHD3Q3KNS1 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.4■□□□□ 0.54
PTCHD3Q3KNS1 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTCHD3Q3KNS1 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.4■□□□□ 0.54
PTCHD3Q3KNS1 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.4■□□□□ 0.54
PTCHD3Q3KNS1 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTCHD3Q3KNS1 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.4■□□□□ 0.54
PTCHD3Q3KNS1 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.4■□□□□ 0.54
PTCHD3Q3KNS1 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.4■□□□□ 0.54
PTCHD3Q3KNS1 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.54
PTCHD3Q3KNS1 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
PTCHD3Q3KNS1 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
PTCHD3Q3KNS1 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
PTCHD3Q3KNS1 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
PTCHD3Q3KNS1 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
PTCHD3Q3KNS1 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.39■□□□□ 0.54
PTCHD3Q3KNS1 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
PTCHD3Q3KNS1 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTCHD3Q3KNS1 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
PTCHD3Q3KNS1 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.39■□□□□ 0.53
PTCHD3Q3KNS1 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.39■□□□□ 0.53
PTCHD3Q3KNS1 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTCHD3Q3KNS1 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PTCHD3Q3KNS1 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
PTCHD3Q3KNS1 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTCHD3Q3KNS1 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTCHD3Q3KNS1 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.39■□□□□ 0.53
PTCHD3Q3KNS1 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC18.39■□□□□ 0.53
PTCHD3Q3KNS1 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC18.39■□□□□ 0.53
PTCHD3Q3KNS1 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.39■□□□□ 0.53
PTCHD3Q3KNS1 AC083906.6-201ENST00000641366 219 ntBASIC18.39■□□□□ 0.53
PTCHD3Q3KNS1 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTCHD3Q3KNS1 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.39■□□□□ 0.53
PTCHD3Q3KNS1 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTCHD3Q3KNS1 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTCHD3Q3KNS1 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.39■□□□□ 0.53
PTCHD3Q3KNS1 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTCHD3Q3KNS1 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 CRYGFP-201ENST00000418459 633 ntBASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 AC097488.1-201ENST00000507834 756 ntBASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 CKBP1-201ENST00000565489 1086 ntBASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 RN7SL850P-201ENST00000579959 291 ntBASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 AP000692.2-201ENST00000608391 879 ntBASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 AC010331.1-201ENST00000611423 582 ntBASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 AC093525.10-201ENST00000625130 1569 ntBASIC18.38■□□□□ 0.53
PTCHD3Q3KNS1 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 AL031598.1-201ENST00000561511 1773 ntBASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 AL512353.2-201ENST00000448759 1962 ntBASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 FDX2-206ENST00000492239 773 ntTSL 2 BASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms