Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC23.05■■□□□ 1.28
COL4A1P02462 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC23.05■■□□□ 1.28
COL4A1P02462 AL390719.2-201ENST00000606993 987 ntBASIC23.05■■□□□ 1.28
COL4A1P02462 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
COL4A1P02462 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC23.05■■□□□ 1.28
COL4A1P02462 AC068587.9-201ENST00000641814 219 ntBASIC23.05■■□□□ 1.28
COL4A1P02462 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC23.05■■□□□ 1.28
COL4A1P02462 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL4A1P02462 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
COL4A1P02462 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC23.05■■□□□ 1.28
COL4A1P02462 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
COL4A1P02462 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC23.05■■□□□ 1.28
COL4A1P02462 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
COL4A1P02462 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL4A1P02462 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
COL4A1P02462 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC23.04■■□□□ 1.28
COL4A1P02462 GRAMD4P1-201ENST00000435181 1110 ntBASIC23.04■■□□□ 1.28
COL4A1P02462 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC23.04■■□□□ 1.28
COL4A1P02462 TOB2P1-201ENST00000469761 992 ntBASIC23.04■■□□□ 1.28
COL4A1P02462 AC091607.1-201ENST00000490318 1060 ntBASIC23.04■■□□□ 1.28
COL4A1P02462 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC23.04■■□□□ 1.28
COL4A1P02462 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC23.04■■□□□ 1.28
COL4A1P02462 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
COL4A1P02462 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC23.04■■□□□ 1.28
COL4A1P02462 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC23.04■■□□□ 1.28
COL4A1P02462 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL4A1P02462 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
COL4A1P02462 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL4A1P02462 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL4A1P02462 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC23.04■■□□□ 1.28
COL4A1P02462 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL4A1P02462 Z83836.1-201ENST00000624605 1642 ntBASIC23.04■■□□□ 1.28
COL4A1P02462 AC006333.2-201ENST00000607957 2099 ntBASIC23.04■■□□□ 1.28
COL4A1P02462 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL4A1P02462 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
COL4A1P02462 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
COL4A1P02462 EMBP1-201ENST00000458200 901 ntBASIC23.03■■□□□ 1.28
COL4A1P02462 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL4A1P02462 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC23.03■■□□□ 1.28
COL4A1P02462 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
COL4A1P02462 FEM1AP3-201ENST00000403722 1741 ntBASIC23.03■■□□□ 1.28
COL4A1P02462 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
COL4A1P02462 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL4A1P02462 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL4A1P02462 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL4A1P02462 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL4A1P02462 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC23.03■■□□□ 1.28
COL4A1P02462 AC111152.3-201ENST00000569699 673 ntBASIC23.03■■□□□ 1.28
COL4A1P02462 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
COL4A1P02462 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC23.03■■□□□ 1.28
COL4A1P02462 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC23.02■■□□□ 1.28
COL4A1P02462 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
COL4A1P02462 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
COL4A1P02462 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL4A1P02462 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
COL4A1P02462 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL4A1P02462 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL4A1P02462 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
COL4A1P02462 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
COL4A1P02462 KRT8P10-201ENST00000450021 1447 ntBASIC23.02■■□□□ 1.28
COL4A1P02462 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC23.02■■□□□ 1.28
COL4A1P02462 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL4A1P02462 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL4A1P02462 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC23.02■■□□□ 1.28
COL4A1P02462 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC23.02■■□□□ 1.28
COL4A1P02462 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC23.02■■□□□ 1.28
COL4A1P02462 TBCB-205ENST00000585746 875 ntTSL 3 BASIC23.02■■□□□ 1.28
COL4A1P02462 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL4A1P02462 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC23.02■■□□□ 1.28
COL4A1P02462 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC23.02■■□□□ 1.28
COL4A1P02462 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL4A1P02462 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL4A1P02462 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC23.02■■□□□ 1.28
COL4A1P02462 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL4A1P02462 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC23.02■■□□□ 1.27
COL4A1P02462 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC23.02■■□□□ 1.27
COL4A1P02462 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
COL4A1P02462 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC23.01■■□□□ 1.27
COL4A1P02462 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
COL4A1P02462 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
COL4A1P02462 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
COL4A1P02462 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
COL4A1P02462 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
COL4A1P02462 TSPY12P-201ENST00000421279 868 ntBASIC23.01■■□□□ 1.27
COL4A1P02462 AC009078.2-202ENST00000463353 338 ntBASIC23.01■■□□□ 1.27
COL4A1P02462 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC23.01■■□□□ 1.27
COL4A1P02462 AP005901.3-202ENST00000581653 237 ntBASIC23.01■■□□□ 1.27
COL4A1P02462 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC23.01■■□□□ 1.27
COL4A1P02462 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
COL4A1P02462 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
COL4A1P02462 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
COL4A1P02462 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
COL4A1P02462 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC23.01■■□□□ 1.27
COL4A1P02462 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
COL4A1P02462 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
COL4A1P02462 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC23.01■■□□□ 1.27
COL4A1P02462 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC23.01■■□□□ 1.27
COL4A1P02462 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC23.01■■□□□ 1.27
COL4A1P02462 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC23■■□□□ 1.27
COL4A1P02462 AL845331.1-201ENST00000424978 1190 ntBASIC23■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms