Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 RASA4DP-201ENST00000460726 1199 ntBASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 CD320-202ENST00000537716 1119 ntTSL 2 BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC20.19■□□□□ 0.82
SMIM28A0A1B0GU29 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC20.18■□□□□ 0.82
SMIM28A0A1B0GU29 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMIM28A0A1B0GU29 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC20.18■□□□□ 0.82
SMIM28A0A1B0GU29 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMIM28A0A1B0GU29 AC034232.1-201ENST00000506026 1064 ntBASIC20.18■□□□□ 0.82
SMIM28A0A1B0GU29 LY6E-213ENST00000522528 606 ntTSL 3 BASIC20.18■□□□□ 0.82
SMIM28A0A1B0GU29 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
SMIM28A0A1B0GU29 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC20.18■□□□□ 0.82
SMIM28A0A1B0GU29 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMIM28A0A1B0GU29 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC20.18■□□□□ 0.82
SMIM28A0A1B0GU29 AC091076.1-201ENST00000610741 619 ntBASIC20.18■□□□□ 0.82
SMIM28A0A1B0GU29 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMIM28A0A1B0GU29 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SMIM28A0A1B0GU29 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMIM28A0A1B0GU29 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SMIM28A0A1B0GU29 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
SMIM28A0A1B0GU29 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.18■□□□□ 0.82
SMIM28A0A1B0GU29 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMIM28A0A1B0GU29 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.18■□□□□ 0.82
SMIM28A0A1B0GU29 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
SMIM28A0A1B0GU29 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SMIM28A0A1B0GU29 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SMIM28A0A1B0GU29 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC20.17■□□□□ 0.82
SMIM28A0A1B0GU29 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
SMIM28A0A1B0GU29 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
SMIM28A0A1B0GU29 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMIM28A0A1B0GU29 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.17■□□□□ 0.82
SMIM28A0A1B0GU29 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMIM28A0A1B0GU29 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMIM28A0A1B0GU29 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.17■□□□□ 0.82
SMIM28A0A1B0GU29 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMIM28A0A1B0GU29 ELP6-205ENST00000439305 880 ntTSL 2 BASIC20.17■□□□□ 0.82
SMIM28A0A1B0GU29 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC20.17■□□□□ 0.82
SMIM28A0A1B0GU29 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC20.17■□□□□ 0.82
SMIM28A0A1B0GU29 AC083849.1-201ENST00000615227 514 ntBASIC20.17■□□□□ 0.82
SMIM28A0A1B0GU29 HOXB1-202ENST00000577092 1414 ntBASIC20.17■□□□□ 0.82
SMIM28A0A1B0GU29 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
SMIM28A0A1B0GU29 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC20.17■□□□□ 0.82
SMIM28A0A1B0GU29 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMIM28A0A1B0GU29 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
SMIM28A0A1B0GU29 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMIM28A0A1B0GU29 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMIM28A0A1B0GU29 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
SMIM28A0A1B0GU29 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMIM28A0A1B0GU29 PCED1CP-201ENST00000419887 785 ntBASIC20.16■□□□□ 0.82
SMIM28A0A1B0GU29 DAP-202ENST00000432074 1048 ntTSL 2 BASIC20.16■□□□□ 0.82
SMIM28A0A1B0GU29 KRT18P23-201ENST00000435622 1283 ntBASIC20.16■□□□□ 0.82
SMIM28A0A1B0GU29 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC20.16■□□□□ 0.82
SMIM28A0A1B0GU29 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC20.16■□□□□ 0.82
SMIM28A0A1B0GU29 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMIM28A0A1B0GU29 KRT8P7-201ENST00000533003 1432 ntBASIC20.16■□□□□ 0.82
SMIM28A0A1B0GU29 LINC01311-201ENST00000565162 1445 ntBASIC20.16■□□□□ 0.82
SMIM28A0A1B0GU29 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMIM28A0A1B0GU29 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMIM28A0A1B0GU29 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
SMIM28A0A1B0GU29 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SMIM28A0A1B0GU29 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC20.16■□□□□ 0.82
SMIM28A0A1B0GU29 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SMIM28A0A1B0GU29 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SMIM28A0A1B0GU29 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC20.16■□□□□ 0.82
SMIM28A0A1B0GU29 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SMIM28A0A1B0GU29 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 SLC25A24-204ENST00000569674 2357 ntBASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 BET1L-202ENST00000332865 533 ntTSL 5 BASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 AC092597.1-201ENST00000487352 616 ntBASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 ZNF444P1-201ENST00000559497 298 ntBASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 AL136038.3-201ENST00000561909 1096 ntBASIC20.15■□□□□ 0.82
SMIM28A0A1B0GU29 DBP-204ENST00000599385 709 ntTSL 3 BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms