Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 MIR4777-201ENST00000583710 86 ntBASIC-0.85□□□□□ -2.55
VPS28Q9UK41 MIR582-201ENST00000365731 98 ntBASIC-0.86□□□□□ -2.55
VPS28Q9UK41 SNORD116-21-201ENST00000384507 92 ntBASIC-0.86□□□□□ -2.55
VPS28Q9UK41 SNORD42B-201ENST00000458893 67 ntBASIC-0.86□□□□□ -2.55
VPS28Q9UK41 RNU6-795P-201ENST00000516323 103 ntBASIC-0.86□□□□□ -2.55
VPS28Q9UK41 MIR3133-201ENST00000583157 78 ntBASIC-0.86□□□□□ -2.55
VPS28Q9UK41 MIR4436A-201ENST00000585278 85 ntBASIC-0.86□□□□□ -2.55
VPS28Q9UK41 AC145423.2-201ENST00000610631 239 ntBASIC-0.86□□□□□ -2.55
VPS28Q9UK41 RNU6-1107P-201ENST00000364817 104 ntBASIC-0.87□□□□□ -2.55
VPS28Q9UK41 AL445193.1-201ENST00000441183 141 ntBASIC-0.87□□□□□ -2.55
VPS28Q9UK41 Y_RNA.491-201ENST00000384417 107 ntBASIC-0.88□□□□□ -2.55
VPS28Q9UK41 RNU7-55P-201ENST00000459426 62 ntBASIC-0.88□□□□□ -2.55
VPS28Q9UK41 MIR548Z-201ENST00000584743 97 ntBASIC-0.88□□□□□ -2.55
VPS28Q9UK41 AC012531.4-201ENST00000616509 177 ntBASIC-0.88□□□□□ -2.55
VPS28Q9UK41 Y_RNA.96-201ENST00000363092 109 ntBASIC-0.89□□□□□ -2.55
VPS28Q9UK41 RNU6-704P-201ENST00000364162 103 ntBASIC-0.89□□□□□ -2.55
VPS28Q9UK41 SNORD56B-201ENST00000384713 71 ntBASIC-0.89□□□□□ -2.55
VPS28Q9UK41 Y_RNA.705-201ENST00000516862 110 ntBASIC-0.89□□□□□ -2.55
VPS28Q9UK41 snoU13.13-201ENST00000458842 104 ntBASIC-0.9□□□□□ -2.55
VPS28Q9UK41 SCARNA23-201ENST00000516060 130 ntBASIC-0.9□□□□□ -2.55
VPS28Q9UK41 RNU6-1333P-201ENST00000516162 93 ntBASIC-0.9□□□□□ -2.55
VPS28Q9UK41 RNY4P3-201ENST00000365254 95 ntBASIC-0.91□□□□□ -2.56
VPS28Q9UK41 RNU6-972P-201ENST00000391208 107 ntBASIC-0.91□□□□□ -2.56
VPS28Q9UK41 RNU6-62P-201ENST00000516526 102 ntBASIC-0.91□□□□□ -2.56
VPS28Q9UK41 MIR3140-201ENST00000583685 90 ntBASIC-0.91□□□□□ -2.56
VPS28Q9UK41 MT-TQ-201ENST00000387372 72 ntBASIC-0.92□□□□□ -2.56
VPS28Q9UK41 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-0.92□□□□□ -2.56
VPS28Q9UK41 SNORD114-14-201ENST00000362723 75 ntBASIC-0.93□□□□□ -2.56
VPS28Q9UK41 RNU6-495P-201ENST00000362995 107 ntBASIC-0.93□□□□□ -2.56
VPS28Q9UK41 SNORD114-15-201ENST00000364687 72 ntBASIC-0.93□□□□□ -2.56
VPS28Q9UK41 RNU6-746P-201ENST00000384112 109 ntBASIC-0.93□□□□□ -2.56
VPS28Q9UK41 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.93□□□□□ -2.56
VPS28Q9UK41 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.93□□□□□ -2.56
VPS28Q9UK41 RNU6-904P-201ENST00000516206 101 ntBASIC-0.93□□□□□ -2.56
VPS28Q9UK41 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-0.93□□□□□ -2.56
VPS28Q9UK41 Y_RNA.220-201ENST00000364244 109 ntBASIC-0.94□□□□□ -2.56
VPS28Q9UK41 RNU6-1051P-201ENST00000365471 102 ntBASIC-0.94□□□□□ -2.56
VPS28Q9UK41 MIR204-201ENST00000385200 110 ntBASIC-0.94□□□□□ -2.56
VPS28Q9UK41 RNU6-1177P-201ENST00000391058 104 ntBASIC-0.94□□□□□ -2.56
VPS28Q9UK41 RNU6-887P-201ENST00000410660 100 ntBASIC-0.94□□□□□ -2.56
VPS28Q9UK41 AC097510.1-201ENST00000510945 133 ntBASIC-0.94□□□□□ -2.56
VPS28Q9UK41 RNU6-774P-201ENST00000363238 107 ntBASIC-0.95□□□□□ -2.56
VPS28Q9UK41 RNU6-973P-201ENST00000364690 107 ntBASIC-0.95□□□□□ -2.56
VPS28Q9UK41 SNORA63.6-201ENST00000364921 119 ntBASIC-0.96□□□□□ -2.56
VPS28Q9UK41 SNORD58A-201ENST00000383875 65 ntBASIC-0.96□□□□□ -2.56
VPS28Q9UK41 SNORA24B-201ENST00000384176 131 ntBASIC-0.96□□□□□ -2.56
VPS28Q9UK41 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.96□□□□□ -2.56
VPS28Q9UK41 RNY1P7-201ENST00000384743 110 ntBASIC-0.96□□□□□ -2.56
VPS28Q9UK41 SNORA19.1-201ENST00000410656 129 ntBASIC-0.96□□□□□ -2.56
VPS28Q9UK41 MTATP6P29-201ENST00000415057 132 ntBASIC-0.96□□□□□ -2.56
VPS28Q9UK41 RNA5SP476-201ENST00000516613 103 ntBASIC-0.96□□□□□ -2.56
VPS28Q9UK41 RNU6-502P-201ENST00000362419 108 ntBASIC-0.97□□□□□ -2.56
VPS28Q9UK41 RNA5SP292-201ENST00000390974 118 ntBASIC-0.97□□□□□ -2.56
VPS28Q9UK41 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.97□□□□□ -2.56
VPS28Q9UK41 MIR4280-201ENST00000582178 76 ntBASIC-0.97□□□□□ -2.56
VPS28Q9UK41 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-0.97□□□□□ -2.56
VPS28Q9UK41 MIR6851-201ENST00000617060 67 ntBASIC-0.97□□□□□ -2.56
VPS28Q9UK41 RNU6-959P-201ENST00000384671 107 ntBASIC-0.98□□□□□ -2.57
VPS28Q9UK41 MIR1302-5-201ENST00000408164 150 ntBASIC-0.98□□□□□ -2.57
VPS28Q9UK41 SNORD75.2-201ENST00000408784 58 ntBASIC-0.98□□□□□ -2.57
VPS28Q9UK41 AC008267.6-201ENST00000441664 139 ntBASIC-0.98□□□□□ -2.57
VPS28Q9UK41 RNU7-24P-201ENST00000458867 62 ntBASIC-0.98□□□□□ -2.57
VPS28Q9UK41 snoU13.19-201ENST00000459148 104 ntBASIC-0.98□□□□□ -2.57
VPS28Q9UK41 SNORA18.5-201ENST00000516616 101 ntBASIC-0.98□□□□□ -2.57
VPS28Q9UK41 SNORA13-201ENST00000458790 133 ntBASIC-0.99□□□□□ -2.57
VPS28Q9UK41 RNA5SP169-201ENST00000517268 117 ntBASIC-0.99□□□□□ -2.57
VPS28Q9UK41 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.99□□□□□ -2.57
VPS28Q9UK41 SNORD116-10-201ENST00000363791 102 ntBASIC-1□□□□□ -2.57
VPS28Q9UK41 RNU6-476P-201ENST00000384726 107 ntBASIC-1□□□□□ -2.57
VPS28Q9UK41 SNORA3B-201ENST00000391305 131 ntBASIC-1□□□□□ -2.57
VPS28Q9UK41 AC021146.6-201ENST00000514659 117 ntBASIC-1□□□□□ -2.57
VPS28Q9UK41 Y_RNA.371-201ENST00000365591 113 ntBASIC-1.01□□□□□ -2.57
VPS28Q9UK41 MIR196A1-201ENST00000388006 70 ntBASIC-1.01□□□□□ -2.57
VPS28Q9UK41 RNU5F-1-201ENST00000362507 117 ntBASIC-1.02□□□□□ -2.57
VPS28Q9UK41 RNU4-32P-201ENST00000363404 141 ntBASIC-1.02□□□□□ -2.57
VPS28Q9UK41 Y_RNA.246-201ENST00000364495 108 ntBASIC-1.02□□□□□ -2.57
VPS28Q9UK41 HAR1A.1-201ENST00000459583 118 ntBASIC-1.02□□□□□ -2.57
VPS28Q9UK41 SCARNA17-201ENST00000516183 144 ntBASIC-1.02□□□□□ -2.57
VPS28Q9UK41 SNORD38.3-201ENST00000516599 73 ntBASIC-1.02□□□□□ -2.57
VPS28Q9UK41 MIR6773-201ENST00000612812 74 ntBASIC-1.02□□□□□ -2.57
VPS28Q9UK41 SCARNA20.2-201ENST00000516052 116 ntBASIC-1.03□□□□□ -2.57
VPS28Q9UK41 AC006254.2-201ENST00000603259 279 ntBASIC-1.03□□□□□ -2.57
VPS28Q9UK41 snoR1.1-201ENST00000628177 80 ntBASIC-1.03□□□□□ -2.57
VPS28Q9UK41 Y_RNA.261-201ENST00000364631 102 ntBASIC-1.04□□□□□ -2.58
VPS28Q9UK41 RNU6-30P-201ENST00000384561 107 ntBASIC-1.04□□□□□ -2.58
VPS28Q9UK41 RNU6-1113P-201ENST00000384348 107 ntBASIC-1.05□□□□□ -2.58
VPS28Q9UK41 AC021146.9-201ENST00000512503 156 ntBASIC-1.05□□□□□ -2.58
VPS28Q9UK41 RNU6-990P-201ENST00000364385 104 ntBASIC-1.06□□□□□ -2.58
VPS28Q9UK41 MIR590-201ENST00000385008 97 ntBASIC-1.06□□□□□ -2.58
VPS28Q9UK41 RNU6-1064P-201ENST00000410626 104 ntBASIC-1.06□□□□□ -2.58
VPS28Q9UK41 Y_RNA.107-201ENST00000363190 121 ntBASIC-1.07□□□□□ -2.58
VPS28Q9UK41 SNORD90-201ENST00000391145 111 ntBASIC-1.07□□□□□ -2.58
VPS28Q9UK41 SCARNA21.1-201ENST00000515996 128 ntBASIC-1.07□□□□□ -2.58
VPS28Q9UK41 AC026421.1-201ENST00000519101 163 ntBASIC-1.07□□□□□ -2.58
VPS28Q9UK41 MIRLET7B-201ENST00000385140 83 ntBASIC-1.08□□□□□ -2.58
VPS28Q9UK41 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-1.08□□□□□ -2.58
VPS28Q9UK41 RNU7-61P-201ENST00000515897 61 ntBASIC-1.08□□□□□ -2.58
VPS28Q9UK41 RNU6-537P-201ENST00000517277 103 ntBASIC-1.08□□□□□ -2.58
VPS28Q9UK41 MIR548AX-201ENST00000580117 73 ntBASIC-1.08□□□□□ -2.58
VPS28Q9UK41 RNU6-81P-201ENST00000365608 104 ntBASIC-1.09□□□□□ -2.58
Retrieved 100 of 98,524 protein–RNA pairs in 175.9 ms